jgi.p|Nanoce1779_2|670153, mRNA_3922 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|670153
Unique Name	mRNA_3922
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3039
Alignment location	scaffold_8:407843..411504 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	670239
Track	FilteredModels2
ProteinId	670153

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:407843..411504 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670153	gene_3922	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670153	mRNA_3922-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3922	CDS_3922	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:407843..411504+
coding sequence from alignment at scaffold_8:407843..411504+

mRNA sequence

>mRNA_3922 ID=mRNA_3922|Name=jgi.p|Nanoce1779_2|670153|organism=Nannochloropsis oceanica|type=mRNA|length=3039bp
CAACGGGGGGAGGGATGGGAGGGATGGTGGATCAGGCTTTGTTTTTGGAG
AGGGTGGATGACGTCTGGCAAGACCATTGCGAGCACATGCTGACGATTCG
AAGCATCTTTTTGTACCTGGACCGGAGCTACGTAATGCAGATGCAGGGTT
TGCAGCCGATTTGGGAGATGGGTCTGACACTGTTTAGGCTCCAATTAGCA
GCACAGGGACGTGCCGCCGGCTCTGTGGCAGCAGCAGCAGCAGCAGCAAC
AGCTGGAGGAAGAGCAACAGGAGGAGGAGGACTGGAGATTAAGATTATCA
AGGGATTGTTGGTGTTGATTGAGCGGCAACGGAACGGAGAGAGTGTGAAT
CAGGCGTTGTTGAGGTCGTTGGTCAAGATGTTGGGGAGTCTGGGGTTGTA
CAAACCCTTGTTTTTAAAAGCTTTCCTGGAAGACACTGAGCGGTATTTCG
CCGCGGAGGGGGTGAAAAAGATGGAGAGTTTGGATGTGGTTGCTTTTTTG
GTCCACGTGGAAAGGAGGTTGGCGGAGGCTGGGGAGGCGTGTGTGGCGTA
CCTGGAGGGGGGGACGAAAAAGGCGCTAGTGAGTGCGATTGAGGCCCGTT
TGCTGGCCCCCCACGTAACAACTTTGATCGAAAAGGGCTTTGGCAGTTTA
ATGGATGCGCAGCGAGTGGAGGATTTGCGGAGGATGTATTTGTTGTGTTG
TCGGAAGGTGGGGGGGGAGGGGGAAGTGAAGTCAGCGTTCAATGCTTATA
TTCGAAGGAGGGGGGCGGAACTGGTGAGTGATGAGGCGCGGGAGAAAGAG
ATGGTCGAAGACTTGTTGGAATTCAAGGGTAAATGTGATATTGTCTTGAT
GTCTGCGCTAGGGGGAAAGGCGAATGTGGGGTGCGTCAATGCCTTGAAGG
ATGGGTTTGAATTTGCAGTGAATGTGCGACCGACCCGACCGGCGGAATTG
CTAGCAAAGTTTATCGATGTCAAGCTGAAGGGAGAGAAAGGTGTGAGCGA
AGTGGAGGTGGAGGGGTTGCTGGACAAGGCGATGGTGCTGTTTCGGTTCG
TGGGCTCGAAGGATGTTTTTGAGGCGTTTTATAAGAAGGATTTGGCAAAG
CGGCTCCTGTTGGGGAAGAGCGCGAGTGCGGACTTGGAAAAGAGCATGAT
TGCGAAGTTGAAGGCGGAGTGTGGGGCCACATTCACCAATAAATTGGAAG
GGATGTTCAAGGATATGGATCTATCGAGGGAGCTGATGGGGAATTACACC
CAGTATTGCGAGGCGTCGGGGGAAAGAGGGAGGGAGGGAGGGAGGGAGGT
CGAAACGAGTGTGCACGTGTTGACAACGGGGTATTGGCCGGCATTTCCCT
TAAGCGAGGTGGTGGTGCCGATGGTGCTTGAGCCGTACATGAGGCGGTTC
TCGGAGTACTACACCGGCAAGTACCAGGGGCGTCGATTAATGTGGCAGCA
TGCCCTGGGAACGTGTGTGGTCAAGGCGCGTTTTTTGGCAGGGACGAAGG
AGTTGAGCGTGTCGTTCTTCCAGATGTTGGTGTTGTTGTGTTTTAATGAT
GGAAGGGAAAGGGGGGTGTCATTTGCGGAGATTAAGGCTGCCACGCGGGT
GGAGGATGGGGAGCTGAGACGTACGTTGCAGAGTTTGGCGTGCGGGAAAG
TGAATCAGCGAGTGCTGCACAAGGAGCCCAAGGGCAAAGAGGTGGAGGAC
AGCGATGCGTTTAGTTTGAATTTGAAATTTGAACATAAGCTTTACCGGAT
CAAAATAAATACAATTCAGCTGAAGGAGACGGTGGAGGAGAATGAAAAGA
CCCACGCAGACGTCCACAGGGATAGGCAGTATCAGATTGATGCGGCTATT
GTCAGGATCATGAAGGCGCGGAAGAAGCTGTCCCATAATCTGTTGTTGAG
TGAGTTGTTCGGTCAGTTAAAGTTCCCCGCCACACCCGTGGATATTAAGA
AGCGGGTGGAGAGTCTGATTGAGCGAGATTATTTGTGTAGGGATGACACG
AACCCTTCAATTTATAATTATGTGGCATAGGGGGAGGGAGGGAAGGAGGA
GGAAGGAAGGGAGGAGAAAGGAAAGATGTGGAAAACCAGAAACCAAGAAG
TGGGGTTCGGATGCGAGAGGGGCGACATAGACAGTGCACATACATTGTAC
ATAATGCACCTACAGAAGTAAGCTTTGGTAAGCGGTCAAAAACCGTAACT
CACATAAGAAAAGAAACTAAACAAATACAGTCATAAAAGGGAAGAAAGAA
TGCAATGTTTGCTTGTCAAAGATGGTGGCGGGGATGGGTTTGAGCCCAAC
AAGAGGAGGGGAGGTTGGGCACGTCGGCTCGGTCGCCGCGTGTCTGCCTA
TCCACAAATACATAGATTTGGTGCGGAGCGATGTCGGCAGGCGGGCGCAA
GACCGCCTGAGGGGACGCAACCCTGTTGGTTTTCGTGGGTCCGGACCGCT
CTTTGATCGTGTTCATGCGACGGGGGGGTCAGCGCGGCGGGATGACAGCG
CAACGAGCTCGGCGGGCAACAACGGAGGAGGCTTTAACGAGGTCAATTCT
TATATTGAGTCGCAGCAACGACGCATTCAAGAGCTAGAGCGGATTAACAT
CGATCTCGAGCGCCGCCTAGAGCAACAAGCTCGCGAGAGGATGAAGCTTG
AGAGGGAGTCCGTGGAGAACAAGCGGGCATGGGAGGCACAGCACACCAAC
ATTGGCCACGAACGTGATGAATGGAGAGGCCGCTATGAGAAGGAACTCCT
GCACATGCAAAAACTCCGCGAGAACAACCGACGCCTAGAGCGAGAGCTGC
ATGGTTTCCTTCAAAAGAAGTATGATTTTATGCAGATGCAGTCGAGGTCG
GCCTCGGGGAGCACTGGAGGTGGTAGTGGTGGTGGTGGAGGAGGAGGAGT
GACTCACATGGCGGAACGCGGAGCATGCGCGCGGCGACGATGGGAAGCAG
CGGTGGGCGAGGAGGAGAGCGAGGAGAGGGAGGGGGAGGCGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGAGAGAGTTGGCATAG

protein sequence of jgi.p|Nanoce1779_2|670153

>mRNA_3922-protein ID=mRNA_3922-protein|Name=jgi.p|Nanoce1779_2|670153|organism=Nannochloropsis oceanica|type=polypeptide|length=672bp
MGGMVDQALFLERVDDVWQDHCEHMLTIRSIFLYLDRSYVMQMQGLQPIW
EMGLTLFRLQLAAQGRAAGSVAAAAAAATAGGRATGGGGLEIKIIKGLLV
LIERQRNGESVNQALLRSLVKMLGSLGLYKPLFLKAFLEDTERYFAAEGV
KKMESLDVVAFLVHVERRLAEAGEACVAYLEGGTKKALVSAIEARLLAPH
VTTLIEKGFGSLMDAQRVEDLRRMYLLCCRKVGGEGEVKSAFNAYIRRRG
AELVSDEAREKEMVEDLLEFKGKCDIVLMSALGGKANVGCVNALKDGFEF
AVNVRPTRPAELLAKFIDVKLKGEKGVSEVEVEGLLDKAMVLFRFVGSKD
VFEAFYKKDLAKRLLLGKSASADLEKSMIAKLKAECGATFTNKLEGMFKD
MDLSRELMGNYTQYCEASGERGREGGREVETSVHVLTTGYWPAFPLSEVV
VPMVLEPYMRRFSEYYTGKYQGRRLMWQHALGTCVVKARFLAGTKELSVS
FFQMLVLLCFNDGRERGVSFAEIKAATRVEDGELRRTLQSLACGKVNQRV
LHKEPKGKEVEDSDAFSLNLKFEHKLYRIKINTIQLKETVEENEKTHADV
HRDRQYQIDAAIVRIMKARKKLSHNLLLSELFGQLKFPATPVDIKKRVES
LIERDYLCRDDTNPSIYNYVA*

mRNA from alignment at scaffold_8:407843..411504+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3922 ID=mRNA_3922|Name=jgi.p|Nanoce1779_2|670153|organism=Nannochloropsis oceanica|type=mRNA|length=3662bp|location=Sequence derived from alignment at scaffold_8:407843..411504+ (Nannochloropsis oceanica)
CAACGGGGGGAGGGATGGGAGGGATGGTGGATCAGGCTTTGTTTTTGGAG
AGGGTGGATGACGTCTGGCAAGACCATTGCGAGCACATGCTGACGATTCG
AAGCATCTTTTTGTACCTGGACCGGAGCTACGTAATGCAGATGCAGGGTT
TGCAGCCGATTTGGGAGATGGGTCTGACACTGTTTAGGCTCCAATTAGCA
GCACAGGGACGTGCCGCCGGCTCTGTGGCAGCAGCAGCAGCAGCAGCAAC
AGCTGGAGGAAGAGCAACAGGAGGAGGAGGACTGGAGATTAAGATTATCA
AGGGATTGTTGGTGTTGATTGAGCGGCAACGGAACGGAGAGAGTGTGAAT
CAGGCGTTGTTGAGGTCGTTGGTCAAGATGTTGGGGAGTCTGGGGTTGTA
CAAACCCTTGTTTTTAAAAGCTTTCCTGGAAGACACTGAGCGGTATTTCG
CCGCGGAGGGGGTGAAAAAGATGGAGAGTTTGGATGTGGTTGCTTTTTTG
GTCCACGTGGAAAGGAGGTTGGCGGAGGCTGGGGAGGCGTGTGTGGCGTA
CCTGGAGGGGGGGACGAAAAAGGCGCTAGTGAGTGCGATTGAGGCCCGTT
TGCTGGCCCCCCACGTAACAACTTTGATCGAAAAGGGCTTTGGCAGTTTA
ATGGATGCGCAGCGAGTGGAGGATTTGCGGAGGATGTATTTGTTGTGTTG
TCGGAAGGTGGGGGGGGAGGGGGAAGTGAAGTCAGCGTTCAATGCTTATA
TTCGAAGGAGGGGGGCGGAACTGGTGAGTGATGAGGCGCGGGAGAAAGAG
ATGGTCGAAGACTTGTTGGAATTCAAGGGTAAATGTGATATTGTCTTGAT
GTCTGCGCTAGGGGGAAAGGCGAATGTGGGGTGCGTCAATGCCTTGAAGG
ATGGGTTTGAATTTGCAGTGAATGTGCGACCGACCCGACCGGCGGAATTG
CTAGCAAAGTTTATCGATGTCAAGCTGAAGGGAGAGAAAGGTGTGAGCGA
AGTGGAGGTGGAGGGGTTGCTGGACAAGGCGATGGTGCTGTTTCGGTTCG
TGGGCTCGAAGGATGTTTTTGAGGCGTTTTATAAGAAGGATTTGGCAAAG
CGGCTCCTGTTGGGGAAGAGCGCGAGTGCGGACTTGGAAAAGAGCATGAT
TGCGAAGTTGAAGGCGGAGTGTGGGGCCACATTCACCAATAAATTGGAAG
GGATGTTCAAGGATATGGATCTATCGAGGGAGCTGATGGGGAATTACACC
CAGTATTGCGAGGCGTCGGGGGAAAGAGGGAGGGAGGGAGGGAGGGAGGT
CGAAACGAGTGTGCACGTGTTGACAACGGGGTATTGGCCGGCATTTCCCT
TAAGCGAGGTGGTGGTGCCGATGGTGCTTGAGCCGTACATGAGGCGGTTC
TCGGAGTACTACACCGGCAAGTACCAGGGGCGTCGATTAATGTGGCAGCA
TGCCCTGGGAACGTGTGTGGTCAAGGCGCGTTTTTTGGCAGGGACGAAGG
AGTTGAGCGTGTCGTTCTTCCAGATGTTGGTGTTGTTGTGTTTTAATGAT
GGAAGGGAAAGGGGGGTGTCATTTGCGGAGATTAAGGCTGCCACGCGGGT
GGAGGATGGGGAGCTGAGACGTACGTTGCAGAGTTTGGCGTGCGGGAAAG
TGAATCAGCGAGTGCTGCACAAGGAGCCCAAGGGCAAAGAGGTGGAGGAC
AGCGATGCGTTTAGTTTGAATTTGAAATTTGAACATAAGCTTTACCGGAT
CAAAATAAATACAATTCAGCTGAAGGAGACGGTGGAGGAGAATGAAAAGA
CCCACGCAGACGTCCACAGGGATAGGCAGTATCAGATTGATGCGGCTATT
GTCAGGATCATGAAGGCGCGGAAGAAGCTGTCCCATAATCTGTTGTTGAG
TGAGTTGTTCGGTCAGTTAAAGTTCCCCGCCACACCCGTGGATATTAAGA
AGCGGGTGGAGAGTCTGATTGAGCGAGATTATTTGTGTAGGGATGACACG
AACCCTTCAATTTATAATTATGTGGCATAGGGGGAGGGAGGGAAGGAGGA
GGAAGGAAGGGAGGAGAAAGGAAAGATGTGGAAAACCAGAAACCAAGAAG
TGGGGTTCGGATGCGAGAGGGGCGACATAGACAGTGCACATACATTGTAC
ATAATGCACCTACAGAAGTAAGCTTTGGTAAGCGGTCAAAAACCGTAACT
CACATAAGAAAAGAAACTAAACAAATACAGTCATAAAAGGGAAGAAAGAA
TGCAATGTTTGCTTGTCAAAGATGGTGGCGGGGATGGGTTTGAGCCCAAC
AAGAGGAGGGGAGGTTGGGCACGTCGGCTCGGTCGCCGCGTCGGCAATGC
ATCACATCATACTCTTCCTGTCCGTCTTGCTTTTGGTGCCGTAACCTACC
CGCGCTCTGACCACACTCACAGGTGTCTGCCTATCCACAAATACATAGAT
TTGGTGCGGAGCGATGTCGGCAGGCGGGCGCAAGACCGCCTGAGGGGACG
CGTGAGACGACATCATGGTGAGTGCGCTACCACGGTCACGTTTATTCCTT
GACTTATCCGTAAGACACTGCCATCTTTGCATGCATTCCCGGTACCACCT
TGCGTATATTATGCCCTTCTCATACAACCTGTCATCTTGTGGAAACAGAA
CCCTGTTGGTTTTCGTGGGTCCGGACCGCTCTTTGATCGTGTTCATGCGA
CGGGGGGGTCAGCGCGGCGGGATGACAGCGCAACGAGCTCGGCGGGCAAC
AACGGAGGAGGCTTTAACGAGGTCAATTCTTATATTGAGGTATGTGCGTC
GGTGTATGTGAGAGTACAGAGTAGTCGAAAGGGTGTCGATCAACTCGCAT
CCCGCTTTCTCATCGATACGCTCCCACCCTTCCCTCCCTCCCTCCCTCGC
TTCTCTCACCAATCAGTCGCAGCAACGACGCATTCAAGAGCTAGAGCGGA
TTAACATCGATCTCGAGCGCCGCCTAGAGCAACAAGCTCGCGAGAGGATG
AAGCTTGAGAGGGAGTCCGTGGAGAACAAGCGGGCATGGGAGGCACAGCA
CACCAACATTGGCCACGTATGTATTTTGCGTCTGGGGCGACAAGAGGAAA
AATAGAGGAGCTCTGAGCGGGCGTAGTAGCTGATAAGCTGCTCATTATCC
TCATTTCTTTCTCTCCCTTCTATACATATGTACACATAAATGTATGTATT
TATTACCTCTGTCCTGCTGTTAACCTTCGTTTTCTATCTCTGTTTCCCTC
CCTTTCCCTACCATCAACTACCACAGGAACGTGATGAATGGAGAGGCCGC
TATGAGAAGGAACTCCTGCACATGCAAAAACTCCGCGAGAACAACCGACG
CCTAGAGCGAGAGCTGCATGGTTTCCTTCAAAAGAAGTATGATTTTATGC
AGATGCAGTCGAGGTCGGCCTCGGGGAGCACTGGAGGTGGTAGTGGTGGT
GGTGGAGGAGGAGGAGTAGGGGGGGGGAGGGGGAACGAAAGGTGGGCAGC
CACTTTTAAACGGACGGGAAGGTGACTCACATGGCGGAACGCGGAGCATG
CGCGCGGCGACGATGGGAAGCAGCGGTGGGCGAGGAGGAGAGCGAGGAGA
GGGAGGGGGAGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGA
GAGTTGGCATAG

Coding sequence (CDS) from alignment at scaffold_8:407843..411504+

>mRNA_3922 ID=mRNA_3922|Name=jgi.p|Nanoce1779_2|670153|organism=Nannochloropsis oceanica|type=CDS|length=2016bp|location=Sequence derived from alignment at scaffold_8:407843..411504+ (Nannochloropsis oceanica)
ATGGGAGGGATGGTGGATCAGGCTTTGTTTTTGGAGAGGGTGGATGACGT
CTGGCAAGACCATTGCGAGCACATGCTGACGATTCGAAGCATCTTTTTGT
ACCTGGACCGGAGCTACGTAATGCAGATGCAGGGTTTGCAGCCGATTTGG
GAGATGGGTCTGACACTGTTTAGGCTCCAATTAGCAGCACAGGGACGTGC
CGCCGGCTCTGTGGCAGCAGCAGCAGCAGCAGCAACAGCTGGAGGAAGAG
CAACAGGAGGAGGAGGACTGGAGATTAAGATTATCAAGGGATTGTTGGTG
TTGATTGAGCGGCAACGGAACGGAGAGAGTGTGAATCAGGCGTTGTTGAG
GTCGTTGGTCAAGATGTTGGGGAGTCTGGGGTTGTACAAACCCTTGTTTT
TAAAAGCTTTCCTGGAAGACACTGAGCGGTATTTCGCCGCGGAGGGGGTG
AAAAAGATGGAGAGTTTGGATGTGGTTGCTTTTTTGGTCCACGTGGAAAG
GAGGTTGGCGGAGGCTGGGGAGGCGTGTGTGGCGTACCTGGAGGGGGGGA
CGAAAAAGGCGCTAGTGAGTGCGATTGAGGCCCGTTTGCTGGCCCCCCAC
GTAACAACTTTGATCGAAAAGGGCTTTGGCAGTTTAATGGATGCGCAGCG
AGTGGAGGATTTGCGGAGGATGTATTTGTTGTGTTGTCGGAAGGTGGGGG
GGGAGGGGGAAGTGAAGTCAGCGTTCAATGCTTATATTCGAAGGAGGGGG
GCGGAACTGGTGAGTGATGAGGCGCGGGAGAAAGAGATGGTCGAAGACTT
GTTGGAATTCAAGGGTAAATGTGATATTGTCTTGATGTCTGCGCTAGGGG
GAAAGGCGAATGTGGGGTGCGTCAATGCCTTGAAGGATGGGTTTGAATTT
GCAGTGAATGTGCGACCGACCCGACCGGCGGAATTGCTAGCAAAGTTTAT
CGATGTCAAGCTGAAGGGAGAGAAAGGTGTGAGCGAAGTGGAGGTGGAGG
GGTTGCTGGACAAGGCGATGGTGCTGTTTCGGTTCGTGGGCTCGAAGGAT
GTTTTTGAGGCGTTTTATAAGAAGGATTTGGCAAAGCGGCTCCTGTTGGG
GAAGAGCGCGAGTGCGGACTTGGAAAAGAGCATGATTGCGAAGTTGAAGG
CGGAGTGTGGGGCCACATTCACCAATAAATTGGAAGGGATGTTCAAGGAT
ATGGATCTATCGAGGGAGCTGATGGGGAATTACACCCAGTATTGCGAGGC
GTCGGGGGAAAGAGGGAGGGAGGGAGGGAGGGAGGTCGAAACGAGTGTGC
ACGTGTTGACAACGGGGTATTGGCCGGCATTTCCCTTAAGCGAGGTGGTG
GTGCCGATGGTGCTTGAGCCGTACATGAGGCGGTTCTCGGAGTACTACAC
CGGCAAGTACCAGGGGCGTCGATTAATGTGGCAGCATGCCCTGGGAACGT
GTGTGGTCAAGGCGCGTTTTTTGGCAGGGACGAAGGAGTTGAGCGTGTCG
TTCTTCCAGATGTTGGTGTTGTTGTGTTTTAATGATGGAAGGGAAAGGGG
GGTGTCATTTGCGGAGATTAAGGCTGCCACGCGGGTGGAGGATGGGGAGC
TGAGACGTACGTTGCAGAGTTTGGCGTGCGGGAAAGTGAATCAGCGAGTG
CTGCACAAGGAGCCCAAGGGCAAAGAGGTGGAGGACAGCGATGCGTTTAG
TTTGAATTTGAAATTTGAACATAAGCTTTACCGGATCAAAATAAATACAA
TTCAGCTGAAGGAGACGGTGGAGGAGAATGAAAAGACCCACGCAGACGTC
CACAGGGATAGGCAGTATCAGATTGATGCGGCTATTGTCAGGATCATGAA
GGCGCGGAAGAAGCTGTCCCATAATCTGTTGTTGAGTGAGTTGTTCGGTC
AGTTAAAGTTCCCCGCCACACCCGTGGATATTAAGAAGCGGGTGGAGAGT
CTGATTGAGCGAGATTATTTGTGTAGGGATGACACGAACCCTTCAATTTA
TAATTATGTGGCATAG

Synonyms

Publications