jgi.p|Nanoce1779_2|670153, gene_3922 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|670153
Unique Namegene_3922
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_8:407843..411504 +

Link to JBrowse

Properties
Property NameValue
TranscriptId670239
ProteinId670153
Product namecullin-4A
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:407843..411504 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0031461cullin-RING ubiquitin ligase complex
Vocabulary: Molecular Function
TermDefinition
GO:0031625ubiquitin protein ligase binding
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL004ncniL004Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02840NO10G02840Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670153mRNA_3922-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670153mRNA_3922Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|670153

>mRNA_3922-protein ID=mRNA_3922-protein|Name=jgi.p|Nanoce1779_2|670153|organism=Nannochloropsis oceanica|type=polypeptide|length=672bp
MGGMVDQALFLERVDDVWQDHCEHMLTIRSIFLYLDRSYVMQMQGLQPIW
EMGLTLFRLQLAAQGRAAGSVAAAAAAATAGGRATGGGGLEIKIIKGLLV
LIERQRNGESVNQALLRSLVKMLGSLGLYKPLFLKAFLEDTERYFAAEGV
KKMESLDVVAFLVHVERRLAEAGEACVAYLEGGTKKALVSAIEARLLAPH
VTTLIEKGFGSLMDAQRVEDLRRMYLLCCRKVGGEGEVKSAFNAYIRRRG
AELVSDEAREKEMVEDLLEFKGKCDIVLMSALGGKANVGCVNALKDGFEF
AVNVRPTRPAELLAKFIDVKLKGEKGVSEVEVEGLLDKAMVLFRFVGSKD
VFEAFYKKDLAKRLLLGKSASADLEKSMIAKLKAECGATFTNKLEGMFKD
MDLSRELMGNYTQYCEASGERGREGGREVETSVHVLTTGYWPAFPLSEVV
VPMVLEPYMRRFSEYYTGKYQGRRLMWQHALGTCVVKARFLAGTKELSVS
FFQMLVLLCFNDGRERGVSFAEIKAATRVEDGELRRTLQSLACGKVNQRV
LHKEPKGKEVEDSDAFSLNLKFEHKLYRIKINTIQLKETVEENEKTHADV
HRDRQYQIDAAIVRIMKARKKLSHNLLLSELFGQLKFPATPVDIKKRVES
LIERDYLCRDDTNPSIYNYVA*
back to top
Synonyms
Publications