Properties
| Property Name | Value |
|---|
| TranscriptId | 647395 |
| Track | FilteredModels2 |
| ProteinId | 647309 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:806526..808794 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5876 ID=mRNA_5876|Name=jgi.p|Nanoce1779_2|647309|organism=Nannochloropsis oceanica|type=mRNA|length=2172bp
ATGGCCGCCTCCTCGTCTTCTTCCTCTTCTTCCTCTTCTTCCTCCTCCCC
TCCTCCCTCCTCCTCCTCCCCCGAAACTACCCCCGAGCAATGGGAACGGA
TGAAAGCCTTCCTCCGCTCTCTTCCTCCCGCCGACTCTCTATCTCGGACT
CCCCAGAGCCTAGAGCGCGAAAAAGACCTTGTCAGCGCTTTCCTCTCCCA
GCACGTCTCCCTGGTCCAACTCTTCCTCTCTCTCGATCAGGCCACCCGGA
GTGGGGACGAGGAGAGACTACGTCACGTGGCGCGTGTGATTCATCGATGT
TTCACGTCCCCTCTTGGCCTGGATCTGCTGACTGATCCTCTCGTCTTACC
GAACCTGATTGTAGGGATGAAGCACCAGGAGGAAGAAGTTCGGAAGCTGA
CGACGAAGATTCTGAAGCAGAATTTGCAAGTGGGGGAGAAGCGGGTGGAG
GGAGGTGGGGAAGAGAGGGAGGAGAAGAGGCAGGCGTTGATACGGCGGTT
GGTGCAGGGAGGAGGGAGAGAGGGAGGGGAAGGAGAAGGAGGGGAAAGAG
GAGGAGGAGGGGGAGGAGGAGGAGGAGCGGTGGCTGGTGCCGTTTCGTCC
TCTGTTGCCAATGCTTTGATCCAGGGTGTGGCCGACTCTAGCATTGCCGT
CGGTCAATTTTCTGCAGATGCGCTATTGGCAATGATGCGCTTCCCTGTCT
CCCTCCCTCCATTCCTCCCTGCCTCTTCCTCCTCCACCTCGTCCCTCTCC
TCTCTATATGCCAGCAACACGACCCTCCTCCTCTCCCTTCTTCATCAGTA
CGCAAGCACCGATCCAAAGATTGTAAAGGACAGCACCTTGCGCTTACGGT
ATGCAGACATTATTGCCCAAGCCCTCTCTATATCAGACACCACGCCCTCC
CTCCATGCTTTCCTCACCTCCTCCTCCACCGGCCCCGCCGCCGGCCTGCT
CTTCAACCTCGTGGAGGGAGACAAAACGGGAGGTACCGAAGATGTGTTGA
TTAGGTTCAGTGCATTAGAGCTCTTGGATGGGTGCGTGGGTACGAGAAAC
ACCGCCGCGTATGTGCTAGAACGAGGGACGGTCAGAACCCTGGTGGCCCT
CGCGACAGGGAGTGAGGGAGGGAGGGAGGGAGGAGAACCCCACCCGATTT
TGGGGGGGACGGCATTGAGGGTTTTAGGTGGATTCACGGTGTTGCGGTAT
TCGGAGTCGAGGAGGGAGGGTGACAGGCTGGCGGCGCTGCAGGTGCTGTG
TTGCTTTGCTCGCGCATCGAGGGAAGGGTTGAGGAGGGTGCTGGAAGATC
CGGTGTTGCTTGAAAGCTGGTTGGACATGAGGGGGGGAAGTGTGGAGATG
AAAACGGCGCAGATGCACAGTCTGGCAAAGGCTCTGGAGGGAGGGAGGGA
GGGAGGAAGGGAGGGAGGGGGCCACGCACCGCCGGAGCAGACGGGGAGGG
TCCAGGCGACTGAACGACAGCCAGAAGTGGTGGGTGTGGAGATGGAGGAG
GGAGGGAGGGAGGGAGGACGAGGGAGGGTAGTGTCACAAGAGGTGCGAGC
CCTGTCAGATTTGCGGAAGCTCCTGTTTTCGCGATTGGGGGAACTGAACG
GGAGTCCGTCGACAATGAGGTTTGTGCTGCAACAGCTGCAGGCCCTGCCT
ATTCCGAGCCTGAGACATGCGTTGTATCATCTGCTGGTGGCGGTGGTGGG
ACAGGAGGGAGGATGGGGGGTGCGGGCGTTGTTTTCAACGGCCGGGTTTC
GGGAGTTTCTGATGAGCCGGACGACGGAGATGGACAAGATAGGGAAGGAA
TGGAAATACTCGTTGGTGGAGGCAATTGAGCTGGAGACGCGTGGGGAGGG
GGGGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGGTTGCTGTAGGGATGT
TGGGGGACGAGGTGATAGAGGAGCTAAGAGAATTTTTGAAGCTCGGACCT
TTTTATGCGGGGAGGCAGGCCGAGGTGGAGACGACGATGTAGGGAGGGAG
GGAAAGTGGAAGGCAAAGAGGGAGAGGTTTGAGGAGAAAGATTCACAAGA
CACGCAAGTGTTGGTTGCCTAGGGTCATGCACAAAAGCAAAAAAAGTGAA
ACGAAAGACAAGGTTTTTGTGAAATAATGGGAAGAATCATGAAAAAAAAG
ACGACAGAGTAGTCGAAGTATT back to topprotein sequence of jgi.p|Nanoce1779_2|647309 >mRNA_5876-protein ID=mRNA_5876-protein|Name=jgi.p|Nanoce1779_2|647309|organism=Nannochloropsis oceanica|type=polypeptide|length=664bp
MAASSSSSSSSSSSSSPPPSSSSPETTPEQWERMKAFLRSLPPADSLSRT
PQSLEREKDLVSAFLSQHVSLVQLFLSLDQATRSGDEERLRHVARVIHRC
FTSPLGLDLLTDPLVLPNLIVGMKHQEEEVRKLTTKILKQNLQVGEKRVE
GGGEEREEKRQALIRRLVQGGGREGGEGEGGERGGGGGGGGGAVAGAVSS
SVANALIQGVADSSIAVGQFSADALLAMMRFPVSLPPFLPASSSSTSSLS
SLYASNTTLLLSLLHQYASTDPKIVKDSTLRLRYADIIAQALSISDTTPS
LHAFLTSSSTGPAAGLLFNLVEGDKTGGTEDVLIRFSALELLDGCVGTRN
TAAYVLERGTVRTLVALATGSEGGREGGEPHPILGGTALRVLGGFTVLRY
SESRREGDRLAALQVLCCFARASREGLRRVLEDPVLLESWLDMRGGSVEM
KTAQMHSLAKALEGGREGGREGGGHAPPEQTGRVQATERQPEVVGVEMEE
GGREGGRGRVVSQEVRALSDLRKLLFSRLGELNGSPSTMRFVLQQLQALP
IPSLRHALYHLLVAVVGQEGGWGVRALFSTAGFREFLMSRTTEMDKIGKE
WKYSLVEAIELETRGEGGEGREGGREGGVAVGMLGDEVIEELREFLKLGP
FYAGRQAEVETTM* back to topmRNA from alignment at scaffold_11:806526..808794- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5876 ID=mRNA_5876|Name=jgi.p|Nanoce1779_2|647309|organism=Nannochloropsis oceanica|type=mRNA|length=2269bp|location=Sequence derived from alignment at scaffold_11:806526..808794- (Nannochloropsis oceanica)
ATGGCCGCCTCCTCGTCTTCTTCCTCTTCTTCCTCTTCTTCCTCCTCCCC
TCCTCCCTCCTCCTCCTCCCCCGAAACTACCCCCGAGCAATGGGAACGGA
TGAAAGCCTTCCTCCGCTCTCTTCCTCCCGCCGACTCTCTATCTCGGACT
CCCCAGAGCCTAGAGCGCGAAAAAGACCTTGTCAGCGCTTTCCTCTCCCA
GCACGTCTCCCTGGTCCAACTCTTCCTCTCTCTCGATCAGGCCACCCGGA
GTGGGGACGAGGAGAGACTACGTCACGTGGCGCGTGTGATTCATCGATGT
TTCACGTCCCCTCTTGGCCTGGATCTGCTGACTGATCCTCTCGTCTTACC
GAACCTGATTGTAGGGATGAAGCACCAGGAGGAAGAAGTTCGGAAGCTGA
CGACGAAGATTCTGAAGCAGAATTTGCAAGTGGGGGAGAAGCGGGTGGAG
GGAGGTGGGGAAGAGAGGGAGGAGAAGAGGCAGGCGTTGATACGGCGGTT
GGTGCAGGGAGGAGGGAGAGAGGGAGGGGAAGGAGAAGGAGGGGAAAGAG
GAGGAGGAGGGGGAGGAGGAGGAGGAGCGGTGGCTGGTGCCGTTTCGTCC
TCTGTTGCCAATGCTTTGATCCAGGGTGTGGCCGACTCTAGCATTGCCGT
CGGTCAATTTTCTGCAGATGCGCTATTGGCAATGATGCGCTTCCCTGTCT
CCCTCCCTCCATTCCTCCCTGCCTCTTCCTCCTCCACCTCGTCCCTCTCC
TCTCTATATGCCAGCAACACGACCCTCCTCCTCTCCCTTCTTCATCAGTA
CGCAAGCACCGATCCAAAGATTGTAAAGGACAGCACCTTGCGCTTACGGT
ATGCAGACATTATTGCCCAAGCCCTCTCTATATCAGACACCACGCCCTCC
CTCCATGCTTTCCTCACCTCCTCCTCCACCGGCCCCGCCGCCGGCCTGCT
CTTCAACCTCGTGGAGGGAGACAAAACGGGAGGTACCGAAGATGTGTTGA
TTAGGTTCAGTGCATTAGAGCTCTTGGATGGGTGCGTGGGTACGAGAAAC
ACCGCCGCGTATGTGCTAGAACGAGGGACGGTCAGAACCCTGGTGGCCCT
CGCGACAGGGAGTGAGGGAGGGAGGGAGGGAGGAGAACCCCACCCGATTT
TGGGGGGGACGGCATTGAGGGTTTTAGGTGGATTGTACCACACACTGTTG
CGAGACGATGGCATGAGTGGGAGGGAGGGAGGGGGGGGAGGGAGGGGGGG
GGGACGAGGAGATCATGCTGTTGCTCATGAGCACGGTGTTGCGGTATTCG
GAGTCGAGGAGGGAGGGTGACAGGCTGGCGGCGCTGCAGGTGCTGTGTTG
CTTTGCTCGCGCATCGAGGGAAGGGTTGAGGAGGGTGCTGGAAGATCCGG
TGTTGCTTGAAAGCTGGTTGGACATGAGGGGGGGAAGTGTGGAGATGAAA
ACGGCGCAGATGCACAGTCTGGCAAAGGCTCTGGAGGGAGGGAGGGAGGG
AGGAAGGGAGGGAGGGGGCCACGCACCGCCGGAGCAGACGGGGAGGGTCC
AGGCGACTGAACGACAGCCAGAAGTGGTGGGTGTGGAGATGGAGGAGGGA
GGGAGGGAGGGAGGACGAGGGAGGGTAGTGTCACAAGAGGTGCGAGCCCT
GTCAGATTTGCGGAAGCTCCTGTTTTCGCGATTGGGGGAACTGAACGGGA
GTCCGTCGACAATGAGGTTTGTGCTGCAACAGCTGCAGGCCCTGCCTATT
CCGAGCCTGAGACATGCGTTGTATCATCTGCTGGTGGCGGTGGTGGGACA
GGAGGGAGGATGGGGGGTGCGGGCGTTGTTTTCAACGGCCGGGTTTCGGG
AGTTTCTGATGAGCCGGACGACGGAGATGGACAAGATAGGGAAGGAATGG
AAATACTCGTTGGTGGAGGCAATTGAGCTGGAGACGCGTGGGGAGGGGGG
GGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGGTTGCTGTAGGGATGTTGG
GGGACGAGGTGATAGAGGAGCTAAGAGAATTTTTGAAGCTCGGACCTTTT
TATGCGGGGAGGCAGGCCGAGGTGGAGACGACGATGTAGGGAGGGAGGGA
AAGTGGAAGGCAAAGAGGGAGAGGTTTGAGGAGAAAGATTCACAAGACAC
GCAAGTGTTGGTTGCCTAGGGTCATGCACAAAAGCAAAAAAAGTGAAACG
AAAGACAAGGTTTTTGTGAAATAATGGGAAGAATCATGAAAAAAAAGACG
ACAGAGTAGTCGAAGTATT back to topCoding sequence (CDS) from alignment at scaffold_11:806526..808794- >mRNA_5876 ID=mRNA_5876|Name=jgi.p|Nanoce1779_2|647309|organism=Nannochloropsis oceanica|type=CDS|length=3984bp|location=Sequence derived from alignment at scaffold_11:806526..808794- (Nannochloropsis oceanica)
CACGGTGTTGCGGTATTCGGAGTCGAGGAGGGAGGGTGACAGGCTGGCGG
CGCTGCAGGTGCTGTGTTGCTTTGCTCGCGCATCGAGGGAAGGGTTGAGG
AGGGTGCTGGAAGATCCGGTGTTGCTTGAAAGCTGGTTGGACATGAGGGG
GGGAAGTGTGGAGATGAAAACGGCGCAGATGCACAGTCTGGCAAAGGCTC
TGGAGGGAGGGAGGGAGGGAGGAAGGGAGGGAGGGGGCCACGCACCGCCG
GAGCAGACGGGGAGGGTCCAGGCGACTGAACGACAGCCAGAAGTGGTGGG
TGTGGAGATGGAGGAGGGAGGGAGGGAGGGAGGACGAGGGAGGGTAGTGT
CACAAGAGGTGCGAGCCCTGTCAGATTTGCGGAAGCTCCTGTTTTCGCGA
TTGGGGGAACTGAACGGGAGTCCGTCGACAATGAGGTTTGTGCTGCAACA
GCTGCAGGCCCTGCCTATTCCGAGCCTGAGACATGCGTTGTATCATCTGC
TGGTGGCGGTGGTGGGACAGGAGGGAGGATGGGGGGTGCGGGCGTTGTTT
TCAACGGCCGGGTTTCGGGAGTTTCTGATGAGCCGGACGACGGAGATGGA
CAAGATAGGGAAGGAATGGAAATACTCGTTGGTGGAGGCAATTGAGCTGG
AGACGCGTGGGGAGGGGGGGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGG
GTTGCTGTAGGGATGTTGGGGGACGAGGTGATAGAGGAGCTAAGAGAATT
TTTGAAGCTCGGACCTTTTTATGCGGGGAGGCAGGCCGAGGTGGAGACGA
CGATGTAGATGGCCGCCTCCTCGTCTTCTTCCTCTTCTTCCTCTTCTTCC
TCCTCCCCTCCTCCCTCCTCCTCCTCCCCCGAAACTACCCCCGAGCAATG
GGAACGGATGAAAGCCTTCCTCCGCTCTCTTCCTCCCGCCGACTCTCTAT
CTCGGACTCCCCAGAGCCTAGAGCGCGAAAAAGACCTTGTCAGCGCTTTC
CTCTCCCAGCACGTCTCCCTGGTCCAACTCTTCCTCTCTCTCGATCAGGC
CACCCGGAGTGGGGACGAGGAGAGACTACGTCACGTGGCGCGTGTGATTC
ATCGATGTTTCACGTCCCCTCTTGGCCTGGATCTGCTGACTGATCCTCTC
GTCTTACCGAACCTGATTGTAGGGATGAAGCACCAGGAGGAAGAAGTTCG
GAAGCTGACGACGAAGATTCTGAAGCAGAATTTGCAAGTGGGGGAGAAGC
GGGTGGAGGGAGGTGGGGAAGAGAGGGAGGAGAAGAGGCAGGCGTTGATA
CGGCGGTTGGTGCAGGGAGGAGGGAGAGAGGGAGGGGAAGGAGAAGGAGG
GGAAAGAGGAGGAGGAGGGGGAGGAGGAGGAGGAGCGGTGGCTGGTGCCG
TTTCGTCCTCTGTTGCCAATGCTTTGATCCAGGGTGTGGCCGACTCTAGC
ATTGCCGTCGGTCAATTTTCTGCAGATGCGCTATTGGCAATGATGCGCTT
CCCTGTCTCCCTCCCTCCATTCCTCCCTGCCTCTTCCTCCTCCACCTCGT
CCCTCTCCTCTCTATATGCCAGCAACACGACCCTCCTCCTCTCCCTTCTT
CATCAGTACGCAAGCACCGATCCAAAGATTGTAAAGGACAGCACCTTGCG
CTTACGGTATGCAGACATTATTGCCCAAGCCCTCTCTATATCAGACACCA
CGCCCTCCCTCCATGCTTTCCTCACCTCCTCCTCCACCGGCCCCGCCGCC
GGCCTGCTCTTCAACCTCGTGGAGGGAGACAAAACGGGAGGTACCGAAGA
TGTGTTGATTAGGTTCAGTGCATTAGAGCTCTTGGATGGGTGCGTGGGTA
CGAGAAACACCGCCGCGTATGTGCTAGAACGAGGGACGGTCAGAACCCTG
GTGGCCCTCGCGACAGGGAGTGAGGGAGGGAGGGAGGGAGGAGAACCCCA
CCCGATTTTGGGGGGGACGGCATTGAGGGTTTTAGGTGGATTCACGGTGT
TGCGGTATTCGGAGTCGAGGAGGGAGGGTGACAGGCTGGCGGCGCTGCAG
GTGCTGTGTTGCTTTGCTCGCGCATCGAGGGAAGGGTTGAGGAGGGTGCT
GGAAGATCCGGTGTTGCTTGAAAGCTGGTTGGACATGAGGGGGGGAAGTG
TGGAGATGAAAACGGCGCAGATGCACAGTCTGGCAAAGGCTCTGGAGGGA
GGGAGGGAGGGAGGAAGGGAGGGAGGGGGCCACGCACCGCCGGAGCAGAC
GGGGAGGGTCCAGGCGACTGAACGACAGCCAGAAGTGGTGGGTGTGGAGA
TGGAGGAGGGAGGGAGGGAGGGAGGACGAGGGAGGGTAGTGTCACAAGAG
GTGCGAGCCCTGTCAGATTTGCGGAAGCTCCTGTTTTCGCGATTGGGGGA
ACTGAACGGGAGTCCGTCGACAATGAGGTTTGTGCTGCAACAGCTGCAGG
CCCTGCCTATTCCGAGCCTGAGACATGCGTTGTATCATCTGCTGGTGGCG
GTGGTGGGACAGGAGGGAGGATGGGGGGTGCGGGCGTTGTTTTCAACGGC
CGGGTTTCGGGAGTTTCTGATGAGCCGGACGACGGAGATGGACAAGATAG
GGAAGGAATGGAAATACTCGTTGGTGGAGGCAATTGAGCTGGAGACGCGT
GGGGAGGGGGGGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGGTTGCTGT
AGGGATGTTGGGGGACGAGGTGATAGAGGAGCTAAGAGAATTTTTGAAGC
TCGGACCTTTTTATGCGGGGAGGCAGGCCGAGGTGGAGACGACGATGTAG
ATGGCCGCCTCCTCGTCTTCTTCCTCTTCTTCCTCTTCTTCCTCCTCCCC
TCCTCCCTCCTCCTCCTCCCCCGAAACTACCCCCGAGCAATGGGAACGGA
TGAAAGCCTTCCTCCGCTCTCTTCCTCCCGCCGACTCTCTATCTCGGACT
CCCCAGAGCCTAGAGCGCGAAAAAGACCTTGTCAGCGCTTTCCTCTCCCA
GCACGTCTCCCTGGTCCAACTCTTCCTCTCTCTCGATCAGGCCACCCGGA
GTGGGGACGAGGAGAGACTACGTCACGTGGCGCGTGTGATTCATCGATGT
TTCACGTCCCCTCTTGGCCTGGATCTGCTGACTGATCCTCTCGTCTTACC
GAACCTGATTGTAGGGATGAAGCACCAGGAGGAAGAAGTTCGGAAGCTGA
CGACGAAGATTCTGAAGCAGAATTTGCAAGTGGGGGAGAAGCGGGTGGAG
GGAGGTGGGGAAGAGAGGGAGGAGAAGAGGCAGGCGTTGATACGGCGGTT
GGTGCAGGGAGGAGGGAGAGAGGGAGGGGAAGGAGAAGGAGGGGAAAGAG
GAGGAGGAGGGGGAGGAGGAGGAGGAGCGGTGGCTGGTGCCGTTTCGTCC
TCTGTTGCCAATGCTTTGATCCAGGGTGTGGCCGACTCTAGCATTGCCGT
CGGTCAATTTTCTGCAGATGCGCTATTGGCAATGATGCGCTTCCCTGTCT
CCCTCCCTCCATTCCTCCCTGCCTCTTCCTCCTCCACCTCGTCCCTCTCC
TCTCTATATGCCAGCAACACGACCCTCCTCCTCTCCCTTCTTCATCAGTA
CGCAAGCACCGATCCAAAGATTGTAAAGGACAGCACCTTGCGCTTACGGT
ATGCAGACATTATTGCCCAAGCCCTCTCTATATCAGACACCACGCCCTCC
CTCCATGCTTTCCTCACCTCCTCCTCCACCGGCCCCGCCGCCGGCCTGCT
CTTCAACCTCGTGGAGGGAGACAAAACGGGAGGTACCGAAGATGTGTTGA
TTAGGTTCAGTGCATTAGAGCTCTTGGATGGGTGCGTGGGTACGAGAAAC
ACCGCCGCGTATGTGCTAGAACGAGGGACGGTCAGAACCCTGGTGGCCCT
CGCGACAGGGAGTGAGGGAGGGAGGGAGGGAGGAGAACCCCACCCGATTT
TGGGGGGGACGGCATTGAGGGTTTTAGGTGGATT back to top
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