jgi.p|Nanoce1779_2|595697, mRNA_7125 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|595697
Unique Name	mRNA_7125
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1713
Alignment location	scaffold_16:341348..343060 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	595783
Track	FilteredModels2
ProteinId	595697

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:341348..343060 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595697	gene_7125	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595697	mRNA_7125-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7125	CDS_7125	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:341348..343060+
coding sequence from alignment at scaffold_16:341348..343060+

mRNA sequence

>mRNA_7125 ID=mRNA_7125|Name=jgi.p|Nanoce1779_2|595697|organism=Nannochloropsis oceanica|type=mRNA|length=1713bp
AGGAAAGCCAACAAGCCGCCACCGCCCCCTGCATTATCCATAATCAGCCA
TCCGGCGCGGCGCGTCTCCTTCATTCATTCGCATTTCAATGACTTGTGGG
TGCGTCTACTCATCTTTACCATGTCGTCGGTGCCGTATTCCGTAGGGAAC
TTTGCCAGCGAGTTTGAGTACTGGCCTTTGCCACCAGATGAAGAGGCCTT
GACACTTCCGGGGTATCGGCCCCCAGGGTATTTTGACTGTGACGACATTG
CGTTGCCCACGCCCAAGGAGGCAGTGGAAAGGGGCATGGCAACTGCACTG
GTTCGATGGGCGGATTGGGAGGGCATGCATATGTCCCCTGGGATGGTGGA
AGGGCAGAAGCTTGTGCGCTTACCCCCGGGTATCAAGCTCAAGGAGCATG
AGACGGAGGGGGAGCGGGCGGTGCGGATTCAGTCCCACTCAGAAAAGCTA
CGCGGGCTCGCGGCCAAAGAAGCGACCTCCATTGACGTCAACAGCTCGTC
GCATGCAAAGGGCAAGGCGGCGGGGCTGGTGGCCGGTGCGTCGGGGGTAA
GAAGCGCGAGCGGTGGTGGTGGAGGTGATAGTGGCTGCTGTTGTCCGCCA
TCCACAGCCGGCGAGGAATCGCCCGTGGGTCCGGACAAGGAGACGATGCT
AGAAATTTTAGATTTAGTACCCGACCTTAAGCGGGCCGAAACTCAGTTGC
TTGCGCGAATGCGGGCCTCGCAGCTGGCCCTGGGCCGGTGGCGCATCGCC
AACGAGCTGGAGGGGGGAGGCATGCGGGACTTTCGACGGCTTCCCTTCTT
ACGTAAAACCGTCAATGTGGTCCAGGCACCGGCACATGTTGGCACGATGG
CTGAGGCAGGTACTTACGCCGTGCAAGACGACGAGGCGATGGTGACCATT
ACGACGTTTGGACATCGGGCATCCATGCTGTACCGGTACCAGGACTACAT
GCTCCTGGCCCGCAACACGCTAGGGGACCTGCACCGGATGATTTATTGCA
CACTGGCGGCCGTGCTGGCCAAGGAGAACGAGCAGGGAAACGTCCCCGAG
GAATTAAATGACAACTTGCTGGCTTTCTTTTTTATTGAGGGCAAGTTTTA
CGCGACCCTGCGCAGGAAGGAGGGGGACGAAAAGGAGGAGATAGAGGCGG
AGACGGAGAAGGAGGAAGAGGAGGGAAGGAGCAACGAGAGGAAAGAGAAC
CTGGATTTCATCGACGCCATTATCGCCTGGGTGAATGAGCGTGGCAAAGA
CCGACGGATGCAGCTGGGCTTGAGCTCCGACTTGCCTATCGAGGTGCTAG
ACATGGAGACGGTGCAGCTCGCCGACCTGTCTCTGCGTTTGGGCACGAGG
TACCTATATTGCCACCTGGGAGAGTGTGAGCACCACTTCAACGTCTCCGA
CGTACGTTTGCCGAGCCCCGAGGACCCCCGCGATGGTCGGGAGTACCCGC
TGTTGGTCTTCCAGAAGCACTACCGGAAGCGACGCTGCATGGCGTGTGAC
GTGCGACCAGCCAAGTTTTGTGTCCTGGGCGATCCAGTGGGGGACGACCA
CAAAATGGTCTATTGCGAGTTCTGCCATTACTTGCTGCACTACGACGCGC
AAGGACACTTGCTGCGGGATGACTTTGAGGTCTTCCCCTACATTCATGAC
GATTGAGGTAGAAGAGAGAAAAGGAGGGAGGGCTGGTGTACATAGCATAT
GATGACAAATAAT

protein sequence of jgi.p|Nanoce1779_2|595697

>mRNA_7125-protein ID=mRNA_7125-protein|Name=jgi.p|Nanoce1779_2|595697|organism=Nannochloropsis oceanica|type=polypeptide|length=512bp
MSSVPYSVGNFASEFEYWPLPPDEEALTLPGYRPPGYFDCDDIALPTPKE
AVERGMATALVRWADWEGMHMSPGMVEGQKLVRLPPGIKLKEHETEGERA
VRIQSHSEKLRGLAAKEATSIDVNSSSHAKGKAAGLVAGASGVRSASGGG
GGDSGCCCPPSTAGEESPVGPDKETMLEILDLVPDLKRAETQLLARMRAS
QLALGRWRIANELEGGGMRDFRRLPFLRKTVNVVQAPAHVGTMAEAGTYA
VQDDEAMVTITTFGHRASMLYRYQDYMLLARNTLGDLHRMIYCTLAAVLA
KENEQGNVPEELNDNLLAFFFIEGKFYATLRRKEGDEKEEIEAETEKEEE
EGRSNERKENLDFIDAIIAWVNERGKDRRMQLGLSSDLPIEVLDMETVQL
ADLSLRLGTRYLYCHLGECEHHFNVSDVRLPSPEDPRDGREYPLLVFQKH
YRKRRCMACDVRPAKFCVLGDPVGDDHKMVYCEFCHYLLHYDAQGHLLRD
DFEVFPYIHDD*

mRNA from alignment at scaffold_16:341348..343060+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7125 ID=mRNA_7125|Name=jgi.p|Nanoce1779_2|595697|organism=Nannochloropsis oceanica|type=mRNA|length=1713bp|location=Sequence derived from alignment at scaffold_16:341348..343060+ (Nannochloropsis oceanica)
AGGAAAGCCAACAAGCCGCCACCGCCCCCTGCATTATCCATAATCAGCCA
TCCGGCGCGGCGCGTCTCCTTCATTCATTCGCATTTCAATGACTTGTGGG
TGCGTCTACTCATCTTTACCATGTCGTCGGTGCCGTATTCCGTAGGGAAC
TTTGCCAGCGAGTTTGAGTACTGGCCTTTGCCACCAGATGAAGAGGCCTT
GACACTTCCGGGGTATCGGCCCCCAGGGTATTTTGACTGTGACGACATTG
CGTTGCCCACGCCCAAGGAGGCAGTGGAAAGGGGCATGGCAACTGCACTG
GTTCGATGGGCGGATTGGGAGGGCATGCATATGTCCCCTGGGATGGTGGA
AGGGCAGAAGCTTGTGCGCTTACCCCCGGGTATCAAGCTCAAGGAGCATG
AGACGGAGGGGGAGCGGGCGGTGCGGATTCAGTCCCACTCAGAAAAGCTA
CGCGGGCTCGCGGCCAAAGAAGCGACCTCCATTGACGTCAACAGCTCGTC
GCATGCAAAGGGCAAGGCGGCGGGGCTGGTGGCCGGTGCGTCGGGGGTAA
GAAGCGCGAGCGGTGGTGGTGGAGGTGATAGTGGCTGCTGTTGTCCGCCA
TCCACAGCCGGCGAGGAATCGCCCGTGGGTCCGGACAAGGAGACGATGCT
AGAAATTTTAGATTTAGTACCCGACCTTAAGCGGGCCGAAACTCAGTTGC
TTGCGCGAATGCGGGCCTCGCAGCTGGCCCTGGGCCGGTGGCGCATCGCC
AACGAGCTGGAGGGGGGAGGCATGCGGGACTTTCGACGGCTTCCCTTCTT
ACGTAAAACCGTCAATGTGGTCCAGGCACCGGCACATGTTGGCACGATGG
CTGAGGCAGGTACTTACGCCGTGCAAGACGACGAGGCGATGGTGACCATT
ACGACGTTTGGACATCGGGCATCCATGCTGTACCGGTACCAGGACTACAT
GCTCCTGGCCCGCAACACGCTAGGGGACCTGCACCGGATGATTTATTGCA
CACTGGCGGCCGTGCTGGCCAAGGAGAACGAGCAGGGAAACGTCCCCGAG
GAATTAAATGACAACTTGCTGGCTTTCTTTTTTATTGAGGGCAAGTTTTA
CGCGACCCTGCGCAGGAAGGAGGGGGACGAAAAGGAGGAGATAGAGGCGG
AGACGGAGAAGGAGGAAGAGGAGGGAAGGAGCAACGAGAGGAAAGAGAAC
CTGGATTTCATCGACGCCATTATCGCCTGGGTGAATGAGCGTGGCAAAGA
CCGACGGATGCAGCTGGGCTTGAGCTCCGACTTGCCTATCGAGGTGCTAG
ACATGGAGACGGTGCAGCTCGCCGACCTGTCTCTGCGTTTGGGCACGAGG
TACCTATATTGCCACCTGGGAGAGTGTGAGCACCACTTCAACGTCTCCGA
CGTACGTTTGCCGAGCCCCGAGGACCCCCGCGATGGTCGGGAGTACCCGC
TGTTGGTCTTCCAGAAGCACTACCGGAAGCGACGCTGCATGGCGTGTGAC
GTGCGACCAGCCAAGTTTTGTGTCCTGGGCGATCCAGTGGGGGACGACCA
CAAAATGGTCTATTGCGAGTTCTGCCATTACTTGCTGCACTACGACGCGC
AAGGACACTTGCTGCGGGATGACTTTGAGGTCTTCCCCTACATTCATGAC
GATTGAGGTAGAAGAGAGAAAAGGAGGGAGGGCTGGTGTACATAGCATAT
GATGACAAATAAT

Coding sequence (CDS) from alignment at scaffold_16:341348..343060+

>mRNA_7125 ID=mRNA_7125|Name=jgi.p|Nanoce1779_2|595697|organism=Nannochloropsis oceanica|type=CDS|length=1536bp|location=Sequence derived from alignment at scaffold_16:341348..343060+ (Nannochloropsis oceanica)
ATGTCGTCGGTGCCGTATTCCGTAGGGAACTTTGCCAGCGAGTTTGAGTA
CTGGCCTTTGCCACCAGATGAAGAGGCCTTGACACTTCCGGGGTATCGGC
CCCCAGGGTATTTTGACTGTGACGACATTGCGTTGCCCACGCCCAAGGAG
GCAGTGGAAAGGGGCATGGCAACTGCACTGGTTCGATGGGCGGATTGGGA
GGGCATGCATATGTCCCCTGGGATGGTGGAAGGGCAGAAGCTTGTGCGCT
TACCCCCGGGTATCAAGCTCAAGGAGCATGAGACGGAGGGGGAGCGGGCG
GTGCGGATTCAGTCCCACTCAGAAAAGCTACGCGGGCTCGCGGCCAAAGA
AGCGACCTCCATTGACGTCAACAGCTCGTCGCATGCAAAGGGCAAGGCGG
CGGGGCTGGTGGCCGGTGCGTCGGGGGTAAGAAGCGCGAGCGGTGGTGGT
GGAGGTGATAGTGGCTGCTGTTGTCCGCCATCCACAGCCGGCGAGGAATC
GCCCGTGGGTCCGGACAAGGAGACGATGCTAGAAATTTTAGATTTAGTAC
CCGACCTTAAGCGGGCCGAAACTCAGTTGCTTGCGCGAATGCGGGCCTCG
CAGCTGGCCCTGGGCCGGTGGCGCATCGCCAACGAGCTGGAGGGGGGAGG
CATGCGGGACTTTCGACGGCTTCCCTTCTTACGTAAAACCGTCAATGTGG
TCCAGGCACCGGCACATGTTGGCACGATGGCTGAGGCAGGTACTTACGCC
GTGCAAGACGACGAGGCGATGGTGACCATTACGACGTTTGGACATCGGGC
ATCCATGCTGTACCGGTACCAGGACTACATGCTCCTGGCCCGCAACACGC
TAGGGGACCTGCACCGGATGATTTATTGCACACTGGCGGCCGTGCTGGCC
AAGGAGAACGAGCAGGGAAACGTCCCCGAGGAATTAAATGACAACTTGCT
GGCTTTCTTTTTTATTGAGGGCAAGTTTTACGCGACCCTGCGCAGGAAGG
AGGGGGACGAAAAGGAGGAGATAGAGGCGGAGACGGAGAAGGAGGAAGAG
GAGGGAAGGAGCAACGAGAGGAAAGAGAACCTGGATTTCATCGACGCCAT
TATCGCCTGGGTGAATGAGCGTGGCAAAGACCGACGGATGCAGCTGGGCT
TGAGCTCCGACTTGCCTATCGAGGTGCTAGACATGGAGACGGTGCAGCTC
GCCGACCTGTCTCTGCGTTTGGGCACGAGGTACCTATATTGCCACCTGGG
AGAGTGTGAGCACCACTTCAACGTCTCCGACGTACGTTTGCCGAGCCCCG
AGGACCCCCGCGATGGTCGGGAGTACCCGCTGTTGGTCTTCCAGAAGCAC
TACCGGAAGCGACGCTGCATGGCGTGTGACGTGCGACCAGCCAAGTTTTG
TGTCCTGGGCGATCCAGTGGGGGACGACCACAAAATGGTCTATTGCGAGT
TCTGCCATTACTTGCTGCACTACGACGCGCAAGGACACTTGCTGCGGGAT
GACTTTGAGGTCTTCCCCTACATTCATGACGATTGA

Synonyms

Publications