jgi.p|Nanoce1779_2|640637, mRNA_6797 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|640637
Unique Name	mRNA_6797
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	951
Alignment location	scaffold_17:118774..120111 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	640723
Track	FilteredModels2
ProteinId	640637

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:118774..120111 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|640637	gene_6797	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|640637	mRNA_6797-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6797	CDS_6797	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:118774..120111+
coding sequence from alignment at scaffold_17:118774..120111+

mRNA sequence

>mRNA_6797 ID=mRNA_6797|Name=jgi.p|Nanoce1779_2|640637|organism=Nannochloropsis oceanica|type=mRNA|length=951bp
ATGGCTGTAGACGTTTGGGCGCACATTTATGGTTTTGTGGAGTGCCTGGG
TGCCATATGCTGGGCATTTGTTCTCCTGAATGTCGAGTACTTTGATCTCT
TGTTTCCAAAGCGGAAGAGCTTCCGGGGCGAGACCGTCCTCATCACAGGT
GGTGCAAGTGGGATAGGGCGCCTCATGGCCTTGAAGTTTGCCGCCTATGA
GAACACCACCGTCATTATCTGGGATCTAAACGAGACGAGCATGCAAGCGG
TGGCCAAGGAAATCGAAGCCCAGGGGGCCCAGGCCCTGACGTACAAGGTA
GACGTGACCAAACGCGAGCGTGTCTACGAGGTAGCGAAGCAGATGAGGGC
TGAAATTGGGAAGGATGTGACAGTGCTGGTCAACAACGCGGGGATTGTGG
CCGGCAAGCCTTTCCTGGAGGGAGACGATGCTTACTCATTGAAGACAATG
GAGGTGAACGTGATTGCGCATTTTTGGACGGTCAAGGCCTTCTTGCCCGC
AATGGTGCAGATGAATCACGGACACATTATCACGATTGCCAGCACGGCGG
GTTTAGTGGGGGTGGACGGCCTGGCGGACTACTGCACGAGCAAGTCGGCG
GCCATTGCCTTCCATGAGGGGATCCGCACTGAGATCCGTCGGTTGAAATG
CCCGGGAGTGAGGATGACGTTGGTCAACCCCTACTTTATCGACACAGGCA
TGTTCACCGGTGCTAAGACCAAGGCCCCTATTTTGCTCCCTATCTTACAA
CCCGACTATGTCGTCAATTCGATTTTGAACGCGGCGGAGAAGAATCGGAA
TCTGCTGGTGATGCCTCGATATGCCTACATCTTGACCATGACGAATGGTG
TGCCGGCCTTGGTTCGCGATTTCATCTACGACTTTATGGGCGTCGGTGAA
AACATGACGGACTTTAAGCAGACACGGACTAAGACCTTGAAGGAACAGTA
G

protein sequence of jgi.p|Nanoce1779_2|640637

>mRNA_6797-protein ID=mRNA_6797-protein|Name=jgi.p|Nanoce1779_2|640637|organism=Nannochloropsis oceanica|type=polypeptide|length=317bp
MAVDVWAHIYGFVECLGAICWAFVLLNVEYFDLLFPKRKSFRGETVLITG
GASGIGRLMALKFAAYENTTVIIWDLNETSMQAVAKEIEAQGAQALTYKV
DVTKRERVYEVAKQMRAEIGKDVTVLVNNAGIVAGKPFLEGDDAYSLKTM
EVNVIAHFWTVKAFLPAMVQMNHGHIITIASTAGLVGVDGLADYCTSKSA
AIAFHEGIRTEIRRLKCPGVRMTLVNPYFIDTGMFTGAKTKAPILLPILQ
PDYVVNSILNAAEKNRNLLVMPRYAYILTMTNGVPALVRDFIYDFMGVGE
NMTDFKQTRTKTLKEQ*

mRNA from alignment at scaffold_17:118774..120111+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6797 ID=mRNA_6797|Name=jgi.p|Nanoce1779_2|640637|organism=Nannochloropsis oceanica|type=mRNA|length=1338bp|location=Sequence derived from alignment at scaffold_17:118774..120111+ (Nannochloropsis oceanica)
ATGGCTGTAGACGTTTGGGCGCACATTTATGGTTTTGTGGAGTGCCTGGG
TGCCATATGCTGGGCATTTGTTCTCCTGAATGTCGAGTACTTTGATCTCT
TGTTTCCAAAGCGGAAGAGCTTCCGGGGCGAGACCGTCCTCATCACAGGT
ATGAAGTCGAATGCTGTCTCTGCCATTGCCTGGATTGGGGGGGAGGGGTG
TCAAGCTTATGGGCAATGTCTCTAAATATTGTGTCTGATTCCTCTCTCTC
TACCTTTTCTGATCTCACACACAGGTGGTGCAAGTGGGATAGGGCGCCTC
ATGGCCTTGAAGGTAAGTGACGTGCGTGCTTGTTTGCGGTGGGTTATCTT
AGGCAATGCACGGGGTATCTTTGTTCCTCGGATCATGCATTTCTTCTCGA
GCGTATCTGTGTCCACCCCCTTTCCCTTCGGACAGAGTAGAACGAGGTGT
TCGGGGCGTACTTTTCTGGTTCTCTCTCCCTCCCATTCTCTCCCTGCCTC
ACATGACGCTCACGAATTACCCCCGACGTAAAATTCTCTTCTCTCTCATC
CTTCTCACACCCAATAAATATAGTTTGCCGCCTATGAGAACACCACCGTC
ATTATCTGGGATCTAAACGAGACGAGCATGCAAGCGGTGGCCAAGGAAAT
CGAAGCCCAGGGGGCCCAGGCCCTGACGTACAAGGTAGACGTGACCAAAC
GCGAGCGTGTCTACGAGGTAGCGAAGCAGATGAGGGCTGAAATTGGGAAG
GATGTGACAGTGCTGGTCAACAACGCGGGGATTGTGGCCGGCAAGCCTTT
CCTGGAGGGAGACGATGCTTACTCATTGAAGACAATGGAGGTGAACGTGA
TTGCGCATTTTTGGACGGTCAAGGCCTTCTTGCCCGCAATGGTGCAGATG
AATCACGGACACATTATCACGATTGCCAGCACGGCGGGTTTAGTGGGGGT
GGACGGCCTGGCGGACTACTGCACGAGCAAGTCGGCGGCCATTGCCTTCC
ATGAGGGGATCCGCACTGAGATCCGTCGGTTGAAATGCCCGGGAGTGAGG
ATGACGTTGGTCAACCCCTACTTTATCGACACAGGCATGTTCACCGGTGC
TAAGACCAAGGCCCCTATTTTGCTCCCTATCTTACAACCCGACTATGTCG
TCAATTCGATTTTGAACGCGGCGGAGAAGAATCGGAATCTGCTGGTGATG
CCTCGATATGCCTACATCTTGACCATGACGAATGGTGTGCCGGCCTTGGT
TCGCGATTTCATCTACGACTTTATGGGCGTCGGTGAAAACATGACGGACT
TTAAGCAGACACGGACTAAGACCTTGAAGGAACAGTAG

Coding sequence (CDS) from alignment at scaffold_17:118774..120111+

>mRNA_6797 ID=mRNA_6797|Name=jgi.p|Nanoce1779_2|640637|organism=Nannochloropsis oceanica|type=CDS|length=2853bp|location=Sequence derived from alignment at scaffold_17:118774..120111+ (Nannochloropsis oceanica)
ATGGCTGTAGACGTTTGGGCGCACATTTATGGTTTTGTGGAGTGCCTGGG
TGCCATATGCTGGGCATTTGTTCTCCTGAATGTCGAGTACTTTGATCTCT
TGTTTCCAAAGCGGAAGAGCTTCCGGGGCGAGACCGTCCTCATCACAGGT
GGTGCAAGTGGGATAGGGCGCCTCATGGCCTTGAAGTTTGCCGCCTATGA
GAACACCACCGTCATTATCTGGGATCTAAACGAGACGAGCATGCAAGCGG
TGGCCAAGGAAATCGAAGCCCAGGGGGCCCAGGCCCTGACGTACAAGGTA
GACGTGACCAAACGCGAGCGTGTCTACGAGGTAGCGAAGCAGATGAGGGC
TGAAATTGGGAAGGATGTGACAGTGCTGGTCAACAACGCGGGGATTGTGG
CCGGCAAGCCTTTCCTGGAGGGAGACGATGCTTACTCATTGAAGACAATG
GAGGTGAACGTGATTGCGCATTTTTGGACGGTCAAGGCCTTCTTGCCCGC
AATGGTGCAGATGAATCACGGACACATTATCACGATTGCCAGCACGGCGG
GTTTAGTGGGGGTGGACGGCCTGGCGGACTACTGCACGAGCAAGTCGGCG
GCCATTGCCTTCCATGAGGGGATCCGCACTGAGATCCGTCGGTTGAAATG
CCCGGGAGTGAGGATGACGTTGGTCAACCCCTACTTTATCGACACAGGCA
TGTTCACCGGTGCTAAGACCAAGGCCCCTATTTTGCTCCCTATCTTACAA
CCCGACTATGTCGTCAATTCGATTTTGAACGCGGCGGAGAAGAATCGGAA
TCTGCTGGTGATGCCTCGATATGCCTACATCTTGACCATGACGAATGGTG
TGCCGGCCTTGGTTCGCGATTTCATCTACGACTTTATGGGCGTCGGTGAA
AACATGACGGACTTTAAGCAGACACGGACTAAGACCTTGAAGGAACAGTA
GATGGCTGTAGACGTTTGGGCGCACATTTATGGTTTTGTGGAGTGCCTGG
GTGCCATATGCTGGGCATTTGTTCTCCTGAATGTCGAGTACTTTGATCTC
TTGTTTCCAAAGCGGAAGAGCTTCCGGGGCGAGACCGTCCTCATCACAGG
TGGTGCAAGTGGGATAGGGCGCCTCATGGCCTTGAAGTTTGCCGCCTATG
AGAACACCACCGTCATTATCTGGGATCTAAACGAGACGAGCATGCAAGCG
GTGGCCAAGGAAATCGAAGCCCAGGGGGCCCAGGCCCTGACGTACAAGGT
AGACGTGACCAAACGCGAGCGTGTCTACGAGGTAGCGAAGCAGATGAGGG
CTGAAATTGGGAAGGATGTGACAGTGCTGGTCAACAACGCGGGGATTGTG
GCCGGCAAGCCTTTCCTGGAGGGAGACGATGCTTACTCATTGAAGACAAT
GGAGGTGAACGTGATTGCGCATTTTTGGACGGTCAAGGCCTTCTTGCCCG
CAATGGTGCAGATGAATCACGGACACATTATCACGATTGCCAGCACGGCG
GGTTTAGTGGGGGTGGACGGCCTGGCGGACTACTGCACGAGCAAGTCGGC
GGCCATTGCCTTCCATGAGGGGATCCGCACTGAGATCCGTCGGTTGAAAT
GCCCGGGAGTGAGGATGACGTTGGTCAACCCCTACTTTATCGACACAGGC
ATGTTCACCGGTGCTAAGACCAAGGCCCCTATTTTGCTCCCTATCTTACA
ACCCGACTATGTCGTCAATTCGATTTTGAACGCGGCGGAGAAGAATCGGA
ATCTGCTGGTGATGCCTCGATATGCCTACATCTTGACCATGACGAATGGT
GTGCCGGCCTTGGTTCGCGATTTCATCTACGACTTTATGGGCGTCGGTGA
AAACATGACGGACTTTAAGCAGACACGGACTAAGACCTTGAAGGAACAGT
AGATGGCTGTAGACGTTTGGGCGCACATTTATGGTTTTGTGGAGTGCCTG
GGTGCCATATGCTGGGCATTTGTTCTCCTGAATGTCGAGTACTTTGATCT
CTTGTTTCCAAAGCGGAAGAGCTTCCGGGGCGAGACCGTCCTCATCACAG
GTGGTGCAAGTGGGATAGGGCGCCTCATGGCCTTGAAGTTTGCCGCCTAT
GAGAACACCACCGTCATTATCTGGGATCTAAACGAGACGAGCATGCAAGC
GGTGGCCAAGGAAATCGAAGCCCAGGGGGCCCAGGCCCTGACGTACAAGG
TAGACGTGACCAAACGCGAGCGTGTCTACGAGGTAGCGAAGCAGATGAGG
GCTGAAATTGGGAAGGATGTGACAGTGCTGGTCAACAACGCGGGGATTGT
GGCCGGCAAGCCTTTCCTGGAGGGAGACGATGCTTACTCATTGAAGACAA
TGGAGGTGAACGTGATTGCGCATTTTTGGACGGTCAAGGCCTTCTTGCCC
GCAATGGTGCAGATGAATCACGGACACATTATCACGATTGCCAGCACGGC
GGGTTTAGTGGGGGTGGACGGCCTGGCGGACTACTGCACGAGCAAGTCGG
CGGCCATTGCCTTCCATGAGGGGATCCGCACTGAGATCCGTCGGTTGAAA
TGCCCGGGAGTGAGGATGACGTTGGTCAACCCCTACTTTATCGACACAGG
CATGTTCACCGGTGCTAAGACCAAGGCCCCTATTTTGCTCCCTATCTTAC
AACCCGACTATGTCGTCAATTCGATTTTGAACGCGGCGGAGAAGAATCGG
AATCTGCTGGTGATGCCTCGATATGCCTACATCTTGACCATGACGAATGG
TGTGCCGGCCTTGGTTCGCGATTTCATCTACGACTTTATGGGCGTCGGTG
AAAACATGACGGACTTTAAGCAGACACGGACTAAGACCTTGAAGGAACAG
TAG

Synonyms

Publications