jgi.p|Nanoce1779_2|610445, mRNA_10216 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610445
Unique NamemRNA_10216
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length981
Alignment locationscaffold_50:34726..36019 +

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Properties
Property NameValue
TranscriptId610531
TrackFilteredModels2
ProteinId610445
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_50supercontigscaffold_50:34726..36019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610445gene_10216Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610445mRNA_10216-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10216CDS_10216Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10216 ID=mRNA_10216|Name=jgi.p|Nanoce1779_2|610445|organism=Nannochloropsis oceanica|type=mRNA|length=981bp
TCGGTCGTTGGCCGTCCGTTGAATATGCCCACCATCGACGCTCACCGAGC
GTACCGTTCTTTCACGGTTGAGCCAGGCGGGTTTCTGGATCTGAGATTTA
TCCGTCTTTATCGTGGCAAGCCCATCCGCATCATCCGTCTGTATTACTAC
GAGATTCGTGGGGGAGGCGTCTACATCCGTGCAGGCGGGACTGCTATCAT
CACTAGCTGTTTGTTCACAGTCAATCCCATTTTGATCACTGAGTTTCTTT
ACACGTCCTCCCCTGTGACAACTGTGAGGATGTTAGGCGGGTATCTATTG
ATGGAAGGTAAAGAAGTACGCCCTGTCACCCTTCCCTCTTTTCTCTTACC
CCTTTTTCCCCTCAGCACTGTAGTCATTACAGACTGGCTGCCACCAATCC
ATCCTATTTTGATCGCTTTGGAGGAAACGCTTTCTCTATTCCTCTTTTCT
TTCCACCCTCCCCTCTTCGGGTCTACCTTTTTCACGAAGTATTTGGTCAC
GATCCCCCCTATTTTCTCTTGCCTAACCTTTTCTCACACAACACAGCTGG
TACATTGACAGTGACAGACTCTCATTTCTACGTGACGCGTCCCGGCGTTT
TGTTTCGAGAGGTCTACACCGTAGGCGGACAAGTGCTGATTTTTGCCGGG
AATGCCATTTTTACTGGCTGTACGTTCACGAGCTCGTTGCTGTTTGTCAA
TGTGGTGGGAGTAGGGGATACGCTTGCCTTATTTGGAGGAACCGCCATCT
ATACCGGATGTGTCTTTACTTTTAACTGTGCGTTGGTCGCTGGATATGGC
GTAGGCATGCTGTTATTTATGGGTGGGGGTGTCGCTATTTTCACAGGATG
CGTCGCAAATAATAATGTTGGCGCAAGCGTATTCTTTGGCTCGGGCAATC
GTATATTTAATGGAGGAGGTGTGACGATTTTGACAGGGATGGTTTTCAAC
ACGGCAGTGGCTTTGCTCGCGACGGCGGGGG
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protein sequence of jgi.p|Nanoce1779_2|610445

>mRNA_10216-protein ID=mRNA_10216-protein|Name=jgi.p|Nanoce1779_2|610445|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MPTIDAHRAYRSFTVEPGGFLDLRFIRLYRGKPIRIIRLYYYEIRGGGVY
IRAGGTAIITSCLFTVNPILITEFLYTSSPVTTVRMLGGYLLMEGKEVRP
VTLPSFLLPLFPLSTVVITDWLPPIHPILIALEETLSLFLFSFHPPLFGS
TFFTKYLVTIPPIFSCLTFSHTTQLVH*
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mRNA from alignment at scaffold_50:34726..36019+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10216 ID=mRNA_10216|Name=jgi.p|Nanoce1779_2|610445|organism=Nannochloropsis oceanica|type=mRNA|length=1294bp|location=Sequence derived from alignment at scaffold_50:34726..36019+ (Nannochloropsis oceanica)
TCGGTCGTTGGCCGTCCGTTGAATATGCCCACCATCGACGCTCACCGAGC
GTACCGTTCTTTCACGGTTGAGCCAGGCGGGTTTCTGGATCTGAGGTAGA
TCCTTCCCCCCTCCTTCCCTCTTTAGCTCCCTTTCTTTCCTTTCATCTCC
TATCCTGCCTAAAAAACCCTCCTCTCCCCCTTTCCTCCCTTCCTCCTTCG
ACTGCCTCTGTTGTAGAACCGCTGCTGTCATCTACCTTACCCGTTTATTC
CTTCCTCCTCGCTTTCTCACTATTGTGTTTCCCCTTGCAAGTCCGTCAAT
TCTAATACCATTTCTCCTGGTTTCCACAAACAAACAATTTTCGATCGCCC
GTCCAACCGCCCGACACTCCCTCCCTTTCTCCTCCCCTCCTTTCCTCTTC
TCCCCTAGATTTATCCGTCTTTATCGTGGCAAGCCCATCCGCATCATCCG
TCTGTATTACTACGAGATTCGTGGGGGAGGCGTCTACATCCGTGCAGGCG
GGACTGCTATCATCACTAGCTGTTTGTTCACAGTCAATCCCATTTTGATC
ACTGAGTTTCTTTACACGTCCTCCCCTGTGACAACTGTGAGGATGTTAGG
CGGGTATCTATTGATGGAAGGTAAAGAAGTACGCCCTGTCACCCTTCCCT
CTTTTCTCTTACCCCTTTTTCCCCTCAGCACTGTAGTCATTACAGACTGG
CTGCCACCAATCCATCCTATTTTGATCGCTTTGGAGGAAACGCTTTCTCT
ATTCCTCTTTTCTTTCCACCCTCCCCTCTTCGGGTCTACCTTTTTCACGA
AGTATTTGGTCACGATCCCCCCTATTTTCTCTTGCCTAACCTTTTCTCAC
ACAACACAGCTGGTACATTGACAGTGACAGACTCTCATTTCTACGTGACG
CGTCCCGGCGTTTTGTTTCGAGAGGTCTACACCGTAGGCGGACAAGTGCT
GATTTTTGCCGGGAATGCCATTTTTACTGGCTGTACGTTCACGAGCTCGT
TGCTGTTTGTCAATGTGGTGGGAGTAGGGGATACGCTTGCCTTATTTGGA
GGAACCGCCATCTATACCGGATGTGTCTTTACTTTTAACTGTGCGTTGGT
CGCTGGATATGGCGTAGGCATGCTGTTATTTATGGGTGGGGGTGTCGCTA
TTTTCACAGGATGCGTCGCAAATAATAATGTTGGCGCAAGCGTATTCTTT
GGCTCGGGCAATCGTATATTTAATGGAGGAGGTGTGACGATTTTGACAGG
GATGGTTTTCAACACGGCAGTGGCTTTGCTCGCGACGGCGGGGG
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Coding sequence (CDS) from alignment at scaffold_50:34726..36019+

>mRNA_10216 ID=mRNA_10216|Name=jgi.p|Nanoce1779_2|610445|organism=Nannochloropsis oceanica|type=CDS|length=1068bp|location=Sequence derived from alignment at scaffold_50:34726..36019+ (Nannochloropsis oceanica)
ATGCCCACCATCGACGCTCACCGAGCGTACCGTTCTTTCACGGTTGAGCC
AGGCGGGTTTCTGGATCTGAGATTTATCCGTCTTTATCGTGGCAAGCCCA
TCCGCATCATCCGTCTGTATTACTACGAGATTCGTGGGGGAGGCGTCTAC
ATCCGTGCAGGCGGGACTGCTATCATCACTAGCTGTTTGTTCACAGTCAA
TCCCATTTTGATCACTGAGTTTCTTTACACGTCCTCCCCTGTGACAACTG
TGAGGATGTTAGGCGGGTATCTATTGATGGAAGGTAAAGAAGTACGCCCT
GTCACCCTTCCCTCTTTTCTCTTACCCCTTTTTCCCCTCAGCACTGTAGT
CATTACAGACTGGCTGCCACCAATCCATCCTATTTTGATCGCTTTGGAGG
AAACGCTTTCTCTATTCCTCTTTTCTTTCCACCCTCCCCTCTTCGGGTCT
ACCTTTTTCACGAAGTATTTGGTCACGATCCCCCCTATTTTCTCTTGCCT
AACCTTTTCTCACACAACACAGCTGGTACATTGAATGCCCACCATCGACG
CTCACCGAGCGTACCGTTCTTTCACGGTTGAGCCAGGCGGGTTTCTGGAT
CTGAGATTTATCCGTCTTTATCGTGGCAAGCCCATCCGCATCATCCGTCT
GTATTACTACGAGATTCGTGGGGGAGGCGTCTACATCCGTGCAGGCGGGA
CTGCTATCATCACTAGCTGTTTGTTCACAGTCAATCCCATTTTGATCACT
GAGTTTCTTTACACGTCCTCCCCTGTGACAACTGTGAGGATGTTAGGCGG
GTATCTATTGATGGAAGGTAAAGAAGTACGCCCTGTCACCCTTCCCTCTT
TTCTCTTACCCCTTTTTCCCCTCAGCACTGTAGTCATTACAGACTGGCTG
CCACCAATCCATCCTATTTTGATCGCTTTGGAGGAAACGCTTTCTCTATT
CCTCTTTTCTTTCCACCCTCCCCTCTTCGGGTCTACCTTTTTCACGAAGT
ATTTGGTCACGATCCCCCCTATTTTCTCTTGCCTAACCTTTTCTCACACA
ACACAGCTGGTACATTGA
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Synonyms
Publications