jgi.p|Nanoce1779_2|613575, mRNA_10683 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|613575
Unique NamemRNA_10683
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length919
Alignment locationscaffold_76:28964..30366 +

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Properties
Property NameValue
TranscriptId613661
TrackFilteredModels2
ProteinId613575
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_76supercontigscaffold_76:28964..30366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613575gene_10683Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613575mRNA_10683-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10683CDS_10683Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10683 ID=mRNA_10683|Name=jgi.p|Nanoce1779_2|613575|organism=Nannochloropsis oceanica|type=mRNA|length=919bp
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTTGATAAAGCACAGGACAGT
AAAAGTGCTCCAACGGACACGTGTGATCCCCCGGTTAGCAGCACTTTCGA
TGTCGGACACCGGGCTTGGTACGGGCAAGCAAGCCAAGGGTGGGGTCAAG
GTGGGGGTGAAAGAGAGGGAGGCGACCAAGACAAGCCCCAAGGAGAAGGA
GAAGTTCGAGGTGGAATGGCGGGTATTGTTGCACAACGATGATGTGCACA
CTTTTGATTACGTCTCCCGAAAATTGGCCGAGGTCGTACCCACATTAACC
CGTTCCAAAGCTTGGGAATGTACATTGGCCGCGCACTCCCATGATTTTTC
CACGATTGCCATCGTGACCAAGACATCTGCTGAGGAATTTTGCATGAAGC
TCCAAAAGGAGGGTTTGACTATCTCCGTCGCCCCTGACTCGAACTTCAAG
AAGGATGGAGAGGGAGGGGAAGGAGGAGGATCCCAGGGAGGAAAGAAGTA
GAGCAGAATGGAAAAGTAGATTGAGAGGAACAGGAACAGCAGCGGCAGCA
GCAAGCACAACACACATGACGATGAAATCATAATGAGGCAGGCTTTGGAA
AGAATAGGAGAGAAGCAGAGCCGAAGGACGTGTAGGATGAAGAGAGGCGA
AAAATACGTAGAGAATTAAGCGGTTAAGCACAACTTTGTGTGTCGGATGG
CTCCTCGGGTGGTGCGGGGAAAGAGGAAAGATGGGGTCTTGGCTTGGAGA
GGCCGGTGGGGTAAGGAGGAGGCTGTGCGCGCGGGAAATGTGAAAACTTT
TAAAGAAGACAATACTCCACGAGTATAGACAACGTAAATTGATGCGATTA
GTGTAGTATTAATCGTATTTGCACGCGTTGGCTTGTTAAAATTGAATGTC
TCTTGAATGTGGTGGAGAG
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protein sequence of jgi.p|Nanoce1779_2|613575

>mRNA_10683-protein ID=mRNA_10683-protein|Name=jgi.p|Nanoce1779_2|613575|organism=Nannochloropsis oceanica|type=polypeptide|length=134bp
MSDTGLGTGKQAKGGVKVGVKEREATKTSPKEKEKFEVEWRVLLHNDDVH
TFDYVSRKLAEVVPTLTRSKAWECTLAAHSHDFSTIAIVTKTSAEEFCMK
LQKEGLTISVAPDSNFKKDGEGGEGGGSQGGKK*
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mRNA from alignment at scaffold_76:28964..30366+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10683 ID=mRNA_10683|Name=jgi.p|Nanoce1779_2|613575|organism=Nannochloropsis oceanica|type=mRNA|length=1403bp|location=Sequence derived from alignment at scaffold_76:28964..30366+ (Nannochloropsis oceanica)
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTTGATAAAGCACAGGACAGG
TACGAATTAAGATAAACACGAGTAGCAGAGGAGAGAAGTTGTGTCTGTAT
CCTAACTGTGACCGGAAGTGTGGTCGGTTTGAGCATGTGGATGTGCGGCT
GAGGGCTGTTGCAATTTGTTCCATGGTTACTTCTGGGTGTGCGTACACTT
GTCTGCGCCTGAAGTTTAAATCTCCCTGGCAGTTTCGTATGAGAATAATT
TACTTACTTTTTAATGTGCCTGCTTCGATGCGCCCTTAACCCTCTCTCCC
TCCTGACCACGTATTGAACAAGGACGAAACTCCTCTTGACTTCACACAGA
TATCCTTATATTCTTACTTACGCCCACCCACCCCGACTCTCGCGCACCTA
CATATCCACCGCTTGAGTAGTAAAAGTGCTCCAACGGACACGTGTGATCC
CCCGGTTAGCAGCACTTTCGATGTCGGACACCGGGCTTGGTACGGGCAAG
CAAGCCAAGGGTGGGGTCAAGGTGGGGGTGAAAGAGAGGGAGGCGACCAA
GACAAGCCCCAAGGAGAAGGAGAAGTTCGAGGTGGAATGGCGGGTATTGT
TGCACAACGATGATGTGCACACTTTTGATTACGTCTCCCGAAAATTGGCC
GAGGTACGCTGTTATTTTCTTTTTTGATCTTTTTTTCTTAAGGTCTGCTT
TTTTTAGACACACCACCTCGATGACCTTATCTTCTCCTTTCTGCCCCTGT
CCCTCCCTCTCATAAGGTCGTACCCACATTAACCCGTTCCAAAGCTTGGG
AATGTACATTGGCCGCGCACTCCCATGATTTTTCCACGATTGCCATCGTG
ACCAAGACATCTGCTGAGGAATTTTGCATGAAGCTCCAAAAGGAGGGTTT
GACTATCTCCGTCGCCCCTGACTCGAACTTCAAGAAGGATGGAGAGGGAG
GGGAAGGAGGAGGATCCCAGGGAGGAAAGAAGTAGAGCAGAATGGAAAAG
TAGATTGAGAGGAACAGGAACAGCAGCGGCAGCAGCAAGCACAACACACA
TGACGATGAAATCATAATGAGGCAGGCTTTGGAAAGAATAGGAGAGAAGC
AGAGCCGAAGGACGTGTAGGATGAAGAGAGGCGAAAAATACGTAGAGAAT
TAAGCGGTTAAGCACAACTTTGTGTGTCGGATGGCTCCTCGGGTGGTGCG
GGGAAAGAGGAAAGATGGGGTCTTGGCTTGGAGAGGCCGGTGGGGTAAGG
AGGAGGCTGTGCGCGCGGGAAATGTGAAAACTTTTAAAGAAGACAATACT
CCACGAGTATAGACAACGTAAATTGATGCGATTAGTGTAGTATTAATCGT
ATTTGCACGCGTTGGCTTGTTAAAATTGAATGTCTCTTGAATGTGGTGGA
GAG
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Coding sequence (CDS) from alignment at scaffold_76:28964..30366+

>mRNA_10683 ID=mRNA_10683|Name=jgi.p|Nanoce1779_2|613575|organism=Nannochloropsis oceanica|type=CDS|length=804bp|location=Sequence derived from alignment at scaffold_76:28964..30366+ (Nannochloropsis oceanica)
ATGTCGGACACCGGGCTTGGTACGGGCAAGCAAGCCAAGGGTGGGGTCAA
GGTGGGGGTGAAAGAGAGGGAGGCGACCAAGACAAGCCCCAAGGAGAAGG
AGAAGTTCGAGGTGGAATGGCGGGTATTGTTGCACAACGATGATGTGCAC
ACTTTTGATTACGTCTCCCGAAAATTGGCCGAGGTCGTACCCACATTAAC
CCGTTCCAAAGCTTGGGAATGTACATTGGCCGCGCACTCCCATGATTTTT
CCACGATTGCCATCGTGACCAAGACATCTGCTGAGGAATTTTGCATGAAG
CTCCAAAAGGAGGGTTTGACTATCTCCGTCGCCCCTGACTCGAACTTCAA
GAAGGATGGAGAGGGAGGGGAAGGAGGAGGATCCCAGGGAGGAAAGAAGT
AGATGTCGGACACCGGGCTTGGTACGGGCAAGCAAGCCAAGGGTGGGGTC
AAGGTGGGGGTGAAAGAGAGGGAGGCGACCAAGACAAGCCCCAAGGAGAA
GGAGAAGTTCGAGGTGGAATGGCGGGTATTGTTGCACAACGATGATGTGC
ACACTTTTGATTACGTCTCCCGAAAATTGGCCGAGGTCGTACCCACATTA
ACCCGTTCCAAAGCTTGGGAATGTACATTGGCCGCGCACTCCCATGATTT
TTCCACGATTGCCATCGTGACCAAGACATCTGCTGAGGAATTTTGCATGA
AGCTCCAAAAGGAGGGTTTGACTATCTCCGTCGCCCCTGACTCGAACTTC
AAGAAGGATGGAGAGGGAGGGGAAGGAGGAGGATCCCAGGGAGGAAAGAA
GTAG
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Synonyms
Publications