jgi.p|Nanoce1779_2|29987, mRNA_11756 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|29987
Unique NamemRNA_11756
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length833
Alignment locationscaffold_104:38027..39535 -

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Properties
Property NameValue
TranscriptId30073
TrackFilteredModels2
ProteinId29987
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_104supercontigscaffold_104:38027..39535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|29987gene_11756Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|29987mRNA_11756-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11756CDS_11756Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11756 ID=mRNA_11756|Name=jgi.p|Nanoce1779_2|29987|organism=Nannochloropsis oceanica|type=mRNA|length=833bp
CATTGCTTCATAAAGCCCCTATCCAAGGCCCTTCTTCTTGTCCTATGACT
CAGGTGCACAATGCGGCACAACAATACTACATGTGCAACAAGTTAAAACC
AGGGCAGGGTGCTTGCGTATGCGCACGAAGCCATTTTTTCATACCGATGA
ACGCAACAGAAGGAGGCAGCTCCCCATCATCAAGCAGCAGCGTCACCTTT
TCCTTCCACTCCTGACACCACAACACAGGTTCAGCCATAGCCGAAAGCAC
GGGGATTCTCAACGACACAGTCAGAAGACCGGAGGGCTAGAACGAGCAAA
GGACCAGATACGACAGATTGACAGAGCAGCACCATACGCAAGCACCTCAA
GACATAACCCCTACAGGACCAGGGCAGCACCAGTGGCACCTTATCTGACC
CAGAAGGATGTATCGTGCGTCTGTGCGCGCCGCGCGTCAGGGCGGAAATC
CTTTCCTCCACGCGCGTCAAAACCAGGTCCTGACAGCTGCCCAAGGGCTT
CGGACAGTTCTACCCGAAGGAGGGGTCAGCAGTTGGAGGGTCGGGCGGTA
ATGCAGGCGGGAGTGACAGGAGCGGCAAGGGCGGGGAGGGCGCCAAGAAG
GGAGGCGACGGCCCTCACTCGAACCACCACAAGGGAGCAGGAGGAGGAGG
AGCTGGCGGGCAAGGACACGGGGGAGGAGGAGGAGGGTTTGGAGGCCCAG
GGGGCGGTGGTGGGGGACCGGCGGACTCGAACGGGCGCTTGTTGACGTCC
ATCCTGGGCCTGACGGCCCTGGGGCTGCTGCTGTCGTCGGAGCCCAGCGG
GAAGGAGATCTCCTGGCAGGAGTTCGTGACGCA
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protein sequence of jgi.p|Nanoce1779_2|29987

>mRNA_11756-protein ID=mRNA_11756-protein|Name=jgi.p|Nanoce1779_2|29987|organism=Nannochloropsis oceanica|type=polypeptide|length=209bp
MRTKPFFHTDERNRRRQLPIIKQQRHLFLPLLTPQHRFSHSRKHGDSQRH
SQKTGGLERAKDQIRQIDRAAPYASTSRHNPYRTRAAPVAPYLTQKDVSC
VCARRASGRKSFPPRASKPGPDSCPRASDSSTRRRGQQLEGRAVMQAGVT
GAARAGRAPRREATALTRTTTREQEEEELAGKDTGEEEEGLEAQGAVVGD
RRTRTGAC*
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mRNA from alignment at scaffold_104:38027..39535-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11756 ID=mRNA_11756|Name=jgi.p|Nanoce1779_2|29987|organism=Nannochloropsis oceanica|type=mRNA|length=1509bp|location=Sequence derived from alignment at scaffold_104:38027..39535- (Nannochloropsis oceanica)
CATTGCTTCATAAAGCCCCTATCCAAGGCCCTTCTTCTTGTCCTATGACT
CAGGTGCACAATGCGGCACAACAATACTACATGTGCAACAAGTTAAAACC
AGGGCAGGGTGCTTGCGTATGCGCACGAAGCCATTTTTTCATACCGATGA
ACGCAACAGAAGGAGGCAGCTCCCCATCATCAAGCAGCAGCGTCACCTTT
TCCTTCCACTCCTGACACCACAACACAGGTTCAGCCATAGCCGAAAGCAC
GGGGATTCTCAACGACACAGTCAGAAGACCGGAGGGCTAGAACGAGCAAA
GGACCAGATACGACAGATTGACAGAGCAGCACCATACGCAAGCACCTCAA
GACATAACCCCTACAGGACCAGGGCAGCACCAGTGGCACCTTATCTGACC
CAGAAGGATGTATCGTGCGTCTGTGCGCGCCGCGCGTCAGGTACGTTTCT
ATGTGTTACTCGTCGGTCCAGCTGTGGCAGGCAGACGTACTGCTCCCCTC
TCCCCTCCCTTCCCTCGCATGGCTCCCTCCGCCCATCCCCATCTCCTTGC
ACACTCACCGCTTTTGTGGATCACCGCAGTCTTGTAAAAATCATTTTCCA
CTCCCACCTCTTCCATTCTTATAACTTCTACCACAGGGCGGAAATCCTTT
CCTCCACGCGCGTCAAAACCAGGTCCTGACAGCGTCCTTGGGGACTCTGC
ACTCTCTCCCGTCCTCCCTCCCTCCCTCGGTCACGGCCTTGTTGGAGCGG
CTCTTGTCGCGAGTGCCCAAGGGCTTCGGACAGTTCTACCCGAAGGAGGG
GTCAGCAGTTGGAGGGTCGGGCGGTAATGCAGGTGAGGCGAGGAGGAAGG
AATGTGGGTGGGTCGGTAATGGATGGGGAGGGAGGGAGGGAGGGATGGGG
GGAGGAAAATATAGTGTTTGGCGTGTGCACACCCTGCCGATAGAGAACTT
TCTTGTAGGTCCTCTGGTGCATCTCACACATGACTGTACCTTCTGCTGTC
TTGTTTGTCGCTTCCACACAACAGGCGGGAGTGACAGGAGCGGCAAGGGC
GGGGAGGGCGCCAAGAAGGGAGGCGACGGCCCTCACTCGAACCACCACAA
GGGAGCAGGAGGAGGAGGAGCTGGCGGGCAAGGACACGGGGGAGGAGGAG
GAGGGTTTGGAGGCCCAGGGGGCGGTGGTGGGGGACCGGCGGACTCGAAC
GGGCGCTTGTTGACGTCCATCCTGGGTAAGGAAGGGAGGGAGGGCGGGAG
GGAGGGCGGGAGGGAGGGAGGGGAGGAGGGAAGGACGGACGGAAGGACAG
GGTGGGAAATGCATCTGCTGTCCTGATTTCGTGTGGAATGGCATTATTCT
CCAGTCCCTGACAGCCTCACCGAATGCCCCCTCCTCTCTGTCCCTTTCTC
TTTCCTCCCTCTCCCCCATCCCCTCTTTGCCAGGCCTGACGGCCCTGGGG
CTGCTGCTGTCGTCGGAGCCCAGCGGGAAGGAGATCTCCTGGCAGGAGTT
CGTGACGCA
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Coding sequence (CDS) from alignment at scaffold_104:38027..39535-

>mRNA_11756 ID=mRNA_11756|Name=jgi.p|Nanoce1779_2|29987|organism=Nannochloropsis oceanica|type=CDS|length=2508bp|location=Sequence derived from alignment at scaffold_104:38027..39535- (Nannochloropsis oceanica)
GCGGGAGTGACAGGAGCGGCAAGGGCGGGGAGGGCGCCAAGAAGGGAGGC
GACGGCCCTCACTCGAACCACCACAAGGGAGCAGGAGGAGGAGGAGCTGG
CGGGCAAGGACACGGGGGAGGAGGAGGAGGGTTTGGAGGCCCAGGGGGCG
GTGGTGGGGGACCGGCGGACTCGAACGGGCGCTTGTTGATGCCCAAGGGC
TTCGGACAGTTCTACCCGAAGGAGGGGTCAGCAGTTGGAGGGTCGGGCGG
TAATGCAGGGCGGAAATCCTTTCCTCCACGCGCGTCAAAACCAGGTCCTG
ACAGCATGCGCACGAAGCCATTTTTTCATACCGATGAACGCAACAGAAGG
AGGCAGCTCCCCATCATCAAGCAGCAGCGTCACCTTTTCCTTCCACTCCT
GACACCACAACACAGGTTCAGCCATAGCCGAAAGCACGGGGATTCTCAAC
GACACAGTCAGAAGACCGGAGGGCTAGAACGAGCAAAGGACCAGATACGA
CAGATTGACAGAGCAGCACCATACGCAAGCACCTCAAGACATAACCCCTA
CAGGACCAGGGCAGCACCAGTGGCACCTTATCTGACCCAGAAGGATGTAT
CGTGCGTCTGTGCGCGCCGCGCGTCAGGCGGGAGTGACAGGAGCGGCAAG
GGCGGGGAGGGCGCCAAGAAGGGAGGCGACGGCCCTCACTCGAACCACCA
CAAGGGAGCAGGAGGAGGAGGAGCTGGCGGGCAAGGACACGGGGGAGGAG
GAGGAGGGTTTGGAGGCCCAGGGGGCGGTGGTGGGGGACCGGCGGACTCG
AACGGGCGCTTGTTGATGCCCAAGGGCTTCGGACAGTTCTACCCGAAGGA
GGGGTCAGCAGTTGGAGGGTCGGGCGGTAATGCAGGGCGGAAATCCTTTC
CTCCACGCGCGTCAAAACCAGGTCCTGACAGCATGCGCACGAAGCCATTT
TTTCATACCGATGAACGCAACAGAAGGAGGCAGCTCCCCATCATCAAGCA
GCAGCGTCACCTTTTCCTTCCACTCCTGACACCACAACACAGGTTCAGCC
ATAGCCGAAAGCACGGGGATTCTCAACGACACAGTCAGAAGACCGGAGGG
CTAGAACGAGCAAAGGACCAGATACGACAGATTGACAGAGCAGCACCATA
CGCAAGCACCTCAAGACATAACCCCTACAGGACCAGGGCAGCACCAGTGG
CACCTTATCTGACCCAGAAGGATGTATCGTGCGTCTGTGCGCGCCGCGCG
TCAGGCGGGAGTGACAGGAGCGGCAAGGGCGGGGAGGGCGCCAAGAAGGG
AGGCGACGGCCCTCACTCGAACCACCACAAGGGAGCAGGAGGAGGAGGAG
CTGGCGGGCAAGGACACGGGGGAGGAGGAGGAGGGTTTGGAGGCCCAGGG
GGCGGTGGTGGGGGACCGGCGGACTCGAACGGGCGCTTGTTGATGCCCAA
GGGCTTCGGACAGTTCTACCCGAAGGAGGGGTCAGCAGTTGGAGGGTCGG
GCGGTAATGCAGGGCGGAAATCCTTTCCTCCACGCGCGTCAAAACCAGGT
CCTGACAGCATGCGCACGAAGCCATTTTTTCATACCGATGAACGCAACAG
AAGGAGGCAGCTCCCCATCATCAAGCAGCAGCGTCACCTTTTCCTTCCAC
TCCTGACACCACAACACAGGTTCAGCCATAGCCGAAAGCACGGGGATTCT
CAACGACACAGTCAGAAGACCGGAGGGCTAGAACGAGCAAAGGACCAGAT
ACGACAGATTGACAGAGCAGCACCATACGCAAGCACCTCAAGACATAACC
CCTACAGGACCAGGGCAGCACCAGTGGCACCTTATCTGACCCAGAAGGAT
GTATCGTGCGTCTGTGCGCGCCGCGCGTCAGGCGGGAGTGACAGGAGCGG
CAAGGGCGGGGAGGGCGCCAAGAAGGGAGGCGACGGCCCTCACTCGAACC
ACCACAAGGGAGCAGGAGGAGGAGGAGCTGGCGGGCAAGGACACGGGGGA
GGAGGAGGAGGGTTTGGAGGCCCAGGGGGCGGTGGTGGGGGACCGGCGGA
CTCGAACGGGCGCTTGTTGATGCCCAAGGGCTTCGGACAGTTCTACCCGA
AGGAGGGGTCAGCAGTTGGAGGGTCGGGCGGTAATGCAGGGCGGAAATCC
TTTCCTCCACGCGCGTCAAAACCAGGTCCTGACAGCATGCGCACGAAGCC
ATTTTTTCATACCGATGAACGCAACAGAAGGAGGCAGCTCCCCATCATCA
AGCAGCAGCGTCACCTTTTCCTTCCACTCCTGACACCACAACACAGGTTC
AGCCATAGCCGAAAGCACGGGGATTCTCAACGACACAGTCAGAAGACCGG
AGGGCTAGAACGAGCAAAGGACCAGATACGACAGATTGACAGAGCAGCAC
CATACGCAAGCACCTCAAGACATAACCCCTACAGGACCAGGGCAGCACCA
GTGGCACCTTATCTGACCCAGAAGGATGTATCGTGCGTCTGTGCGCGCCG
CGCGTCAG
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Synonyms
Publications