jgi.p|Nanoce1779_2|590171, mRNA_5737 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590171
Unique Name	mRNA_5737
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2824
Alignment location	scaffold_11:450338..453353 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	590257
Track	FilteredModels2
ProteinId	590171

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:450338..453353 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590171	gene_5737	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590171	mRNA_5737-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5737	CDS_5737	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:450338..453353+
coding sequence from alignment at scaffold_11:450338..453353+

mRNA sequence

>mRNA_5737 ID=mRNA_5737|Name=jgi.p|Nanoce1779_2|590171|organism=Nannochloropsis oceanica|type=mRNA|length=2824bp
ACACCAGCGCGATGCGGCCGACGCGCTTAGTCCTTTGTGGGCCCTCGACG
AGCAGAAGGAGACCCGGGCACTGGCTCCCACGTCGTCCTCCTGCCGCAAC
GACCACAACAATAGATCTCTGCTCCATTTCCTCTCGACCTCCCCGCACCT
ACGCCTGCCAGCCCTTTCCATTGCCTCCCTCCGTGGTCGAGGCCGCGGCG
GCCATCCAGCAGGGTGAGCAGACACCCACCCAGATCCTGCAGCAATGCCT
GCAGCGCCAGCGAGAGATTGCAGGCCTCAACGCCTTTGTCACCACGATGG
AAACAGCAGCCCTGGCGCAGGCAGCAGCGGCGTCGCAGAGTACAGCAGGA
GGGCGGCCGCTGCACGGGATTCCTATCGCGGTTAAGGACAATTTCTGTAC
AGCAGGTGTACGGACGACAGCCTCGTCCAGAATGCTGGCAGATTTCGTCC
CTCCGTACTCGGCTACTGCCGTGGCACGTCTCGAGGCGGCTGGGGCAGTG
GTGGTGGGCAAGACCAACATGGATGAATTTGGCATGGGCTCAGCCACGCT
CTTTTCTCACTTTGGTGAGACTGTCAGTCCATGGTCACCATCACCCTCAT
CATCCTCATCACCCTCGTCGTCAGCATACTGTGGTGGTCTCCGACTCACA
GCTGGGGGCAGCTCGGGAGGGAGTGCCGTAGCAGTAGCGACGGGTGCGTG
TCTGGCGGCCTTGGGATCGGACACGGGAGGCTCTATACGCCAACCCGCGG
CCCTGTGCGGGCTTGTGGGGCTCAAGCCCAGCTACGGACGCATATCACGC
CATGGACTCATCGCCTATGCCTCTTCCTTGGACTGCCCTGGCCTGCTGAC
GCGGACGGTGGCTGATGCAGCCTTGGTGCTGGACGCGGTAGCGGGACCTG
ACCCGCTGGGAGACTCTTCCTGCTGGGACGGGCCGCACCAGTTGTGCTTC
ACCGAGGCCTTGCAGACAGCTGGCCTGAACTTTTCACTTCGCGGCCTGAA
GGTGGGGCTGGCCGCGGAATTTGGGGTCCGGGAGCTGGAGGCCAGCACGG
TGACAGCATGGGAGGAAGGGGCGCGACTGCTGCAGGATGCAGGTGCCGAG
GTGATGCCTGTGTCCGTACCCTCTATCCCCCTGGCTCTCCCGGCTTACTT
TGTCATTGCCTGTGCCGAGGCATCCTCAAACCTAGCGCGCTACGACGGCA
TTCGGTACGGCCATCGCGCTTCGAGTGCTTGGGCAGACAGTCAGGGAGAC
AGCAGCAGCAGTGCGACTGAGAGCGAGAGAGAGGCGAAGGACCAAGGCAT
GCTGCATAATTTCATTACTGTCTCCCGCTCCGAAGGTTTCGGGCCCGAGG
TCCAGCGCCGCATCCTCGCCGGCTGCCGAGTCCTATCGGCTCGCACCTAC
TCGGCCTACTATGAAAAGGCGCTGGCAGCCCGTGTCCGCATCCGTCAGGA
TATGGCCCAGGCGATGAGCCAGGTGGACGTCATCCTTACCCCCGTCACGC
CCTCGGGCCCCTTCCCCCTCACCACCCCAGCCGAGCCGGCGGCCCTGATG
CTCAACGACATCATGACTGTCCCGGCCAGCCTAGCTGGGCTGCCGGCCGT
CTCGGTGCCCATATCCGTGGTGCCTTCATCCTTCGCAGCCGACGTACCCG
TGCCTTTGGGTTTGCAGCTGATAGGACGTCCCTTCAGGGAGCGGGAGTTG
CTGTACGTGGCGCAGGCTTTGGAGGCCCGGTGTGATTTTGCAAAGCAGAT
TCCCAAGTATGTGCTCAAGGGCAGGCGCACGATATGAAATTTAAGGAATA
TGTTATAGAAACACAAAAGAATTGCATTCCAGAGGACATGCACCTCGACG
GGGTGTACCACCCACATTTTCTTTTTAAGTTGTGCCCGTCTCCGCGAGTC
GCTCCGAGTCTCTCGGAAGAGTATCCTTTTTAGTATGATGGCCTATATTT
GCTCCTTGCTTGTCGCCCTACTTAACGCTAACGTGCACAATCCAGTACAC
ATATGGGAGCAAAAATGCCTTTGCAAATGTAGGGCAAGTAGATGGCGCTC
TGATCACCAGTCAGCACTACTACTTTAGTTGTCCCCTACCACCGGCTGTT
GTCAACGATACACTTCACGGGCAACTTGCTCTTAGCTAACCTACTCACCC
GCCCCATCCAGATCATGATGTGGCGCGTTCTGGGTCTTCTCCTCCTCTCC
CAAGCGGTTTTAGGTTTTTTGCCTCGTTGTCCGGTACCTGCCGCTAATGC
CCGCCTAGCCTCCAGTAGCACAGCCGCAAGTCTAGGGCCCTTGTCAGCCT
CGGGCGGCGGAGGGGAATACGACCTTCTCAAAGGTAGTAGTAGTGTCAGC
AAGGTCAGCAATGATCCGGCTCCAGGCGAATTCGACTTGTTGGGTGGAAA
CGCACAGGAAGATGCCGTCATCAAAGAGGACCCATATGACGTGTTGCTGG
CGGAGCTCATCTTTACGACCGAGGACGTGCGGGAAGTGATTTACAAGCGA
CTGGACGACTGTAATGCCGGGTTTGTGGACTTTTTGGAAAGCCGCATCAG
CGAGGCCACGGACCTGGACGAGCGGCAAGCGCTGCGCTCGCTCGTGGAAA
TGGTAGACGCCGTCAAGAAGGCCGTGGAGCGGAAGAAGGTGGAAGACGCG
GCGCGGATGAAGGAGGAACAGCAACAGCAGCTGGAGGAAGAAGCTAAGCT
TATGGCAGAAATGGCAGAGGCCAAGAAGCGGGCCCAGACAGTGCAAGAGA
CTGAAGCGCAACGTCAGAGCCAGCGTGAGGAGCTCCAGCGTCTGCAGGGT
AGGGGTGCGGGAGATGCGGCGGCG

protein sequence of jgi.p|Nanoce1779_2|590171

>mRNA_5737-protein ID=mRNA_5737-protein|Name=jgi.p|Nanoce1779_2|590171|organism=Nannochloropsis oceanica|type=polypeptide|length=592bp
MRPTRLVLCGPSTSRRRPGHWLPRRPPAATTTTIDLCSISSRPPRTYACQ
PFPLPPSVVEAAAAIQQGEQTPTQILQQCLQRQREIAGLNAFVTTMETAA
LAQAAAASQSTAGGRPLHGIPIAVKDNFCTAGVRTTASSRMLADFVPPYS
ATAVARLEAAGAVVVGKTNMDEFGMGSATLFSHFGETVSPWSPSPSSSSS
PSSSAYCGGLRLTAGGSSGGSAVAVATGACLAALGSDTGGSIRQPAALCG
LVGLKPSYGRISRHGLIAYASSLDCPGLLTRTVADAALVLDAVAGPDPLG
DSSCWDGPHQLCFTEALQTAGLNFSLRGLKVGLAAEFGVRELEASTVTAW
EEGARLLQDAGAEVMPVSVPSIPLALPAYFVIACAEASSNLARYDGIRYG
HRASSAWADSQGDSSSSATESEREAKDQGMLHNFITVSRSEGFGPEVQRR
ILAGCRVLSARTYSAYYEKALAARVRIRQDMAQAMSQVDVILTPVTPSGP
FPLTTPAEPAALMLNDIMTVPASLAGLPAVSVPISVVPSSFAADVPVPLG
LQLIGRPFRERELLYVAQALEARCDFAKQIPKYVLKGRRTI*

mRNA from alignment at scaffold_11:450338..453353+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5737 ID=mRNA_5737|Name=jgi.p|Nanoce1779_2|590171|organism=Nannochloropsis oceanica|type=mRNA|length=3016bp|location=Sequence derived from alignment at scaffold_11:450338..453353+ (Nannochloropsis oceanica)
ACACCAGCGCGATGCGGCCGACGCGCTTAGTCCTTTGTGGGCCCTCGACG
AGCAGAAGGAGACCCGGGCACTGGCTCCCACGTCGTCCTCCTGCCGCAAC
GACCACAACAATAGATCTCTGCTCCATTTCCTCTCGACCTCCCCGCACCT
ACGCCTGCCAGCCCTTTCCATTGCCTCCCTCCGTGGTCGAGGCCGCGGCG
GCCATCCAGCAGGGTGAGCAGACACCCACCCAGATCCTGCAGCAATGCCT
GCAGCGCCAGCGAGAGATTGCAGGCCTCAACGCCTTTGTCACCACGATGG
AAACAGCAGCCCTGGCGCAGGCAGCAGCGGCGTCGCAGAGTACAGCAGGA
GGGCGGCCGCTGCACGGGATTCCTATCGCGGTTAAGGACAATTTCTGTAC
AGCAGGTGTACGGACGACAGCCTCGTCCAGAATGCTGGCAGATTTCGTCC
CTCCGTACTCGGCTACTGCCGTGGCACGTCTCGAGGCGGCTGGGGCAGTG
GTGGTGGGCAAGACCAACATGGATGAATTTGGCATGGGCTCAGCCACGCT
CTTTTCTCACTTTGGTGAGACTGTCAGTCCATGGTCACCATCACCCTCAT
CATCCTCATCACCCTCGTCGTCAGCATACTGTGGTGGTCTCCGACTCACA
GCTGGGGGCAGCTCGGGAGGGAGTGCCGTAGCAGTAGCGACGGGTGCGTG
TCTGGCGGCCTTGGGATCGGACACGGGAGGCTCTATACGCCAACCCGCGG
CCCTGTGCGGGCTTGTGGGGCTCAAGCCCAGCTACGGACGCATATCACGC
CATGGACTCATCGCCTATGCCTCTTCCTTGGACTGCCCTGGCCTGCTGAC
GCGGACGGTGGCTGATGCAGCCTTGGTGCTGGACGCGGTAGCGGGACCTG
ACCCGCTGGGAGACTCTTCCTGCTGGGACGGGCCGCACCAGTTGTGCTTC
ACCGAGGCCTTGCAGACAGCTGGCCTGAACTTTTCACTTCGCGGCCTGAA
GGTGGGGCTGGCCGCGGAATTTGGGGTCCGGGAGCTGGAGGCCAGCACGG
TGACAGCATGGGAGGAAGGGGCGCGACTGCTGCAGGATGCAGGTGCCGAG
GTGATGCCTGTGTCCGTACCCTCTATCCCCCTGGCTCTCCCGGCTTACTT
TGTCATTGCCTGTGCCGAGGCATCCTCAAACCTAGCGCGCTACGACGGCA
TTCGGTACGGCCATCGCGCTTCGAGTGCTTGGGCAGACAGTCAGGGAGAC
AGCAGCAGCAGTGCGACTGAGAGCGAGAGAGAGGCGAAGGACCAAGGCAT
GCTGCATAATTTCATTACTGTCTCCCGCTCCGAAGGTTTCGGGCCCGAGG
TCCAGCGCCGCATCCTCGCCGGCTGCCGAGTCCTATCGGCTCGCACCTAC
TCGGCCTACTATGAAAAGGCGCTGGCAGCCCGTGTCCGCATCCGTCAGGA
TATGGCCCAGGCGATGAGCCAGGTGGACGTCATCCTTACCCCCGTCACGC
CCTCGGGCCCCTTCCCCCTCACCACCCCAGCCGAGCCGGCGGCCCTGATG
CTCAACGACATCATGACTGTCCCGGCCAGCCTAGCTGGGCTGCCGGCCGT
CTCGGTGCCCATATCCGTGGTGCCTTCATCCTTCGCAGCCGACGTACCCG
TGCCTTTGGGTTTGCAGCTGATAGGACGTCCCTTCAGGGAGCGGGAGTTG
CTGTACGTGGCGCAGGCTTTGGAGGCCCGGTGTGATTTTGCAAAGCAGAT
TCCCAAGTATGTGCTCAAGGGCAGGCGCACGATATGAAATTTAAGGAATA
TGTTATAGAAACACAAAAGAATTGCATTCCAGAGGACATGCACCTCGACG
GGGTGTACCACCCACATTTTCTTTTTAAGTTGTGCCCGTCTCCGCGAGTC
GCTCCGAGTCTCTCGGAAGAGTATCCTTTTTAGTATGATGGCCTATATTT
GCTCCTTGCTTGTCGCCCTACTTAACGCTAACGTGCACAATCCAGTACAC
ATATGGGAGCAAAAATGCCTTTGCAAATGTAGGGCAAGTAGATGGCGCTC
TGATCACCAGTCAGCACTACTACTTTAGTTGTCCCCTACCACCGGCTGTT
GTCAACGATACACTTCACGGGCAACTTGCTCTTAGCTAACCTACTCACCC
GCCCCATCCAGATCATGATGTGGCGCGTTCTGGGTCTTCTCCTCCTCTCC
CAAGCGGTTTTAGGTTTTTTGCCTCGTTGTCCGGTACCTGCCGCTAATGC
CCGCCTAGCCTCCAGTAGCACAGCCGCAAGTCTAGGGCCCTTGTCAGCCT
CGGGCGGCGGAGGGGAATACGACCTTCTCAAAGGTAGTAGTAGTGTCAGC
AAGGTCAGCAATGATCCGGCTCCAGGCGAATTCGACTTGTTGGGTGGAAA
CGCACAGGAAGATGCCGTCATCAAAGAGGTAAGTTGTGCGGATTAGGGTA
TGAGACGTGATACGAGCGCAGCACTCGAAAGGGAGTGTCGGTACGTGGTC
AGCAAGGTCGCGTTGGAGAAAATATGCTGAATGATGTTTGGTGTGTGATA
TGAGATGTCGTCCCCGTTGTATTCGTCTCTCAATCACCCGCCTTTCCGTA
CCCTCTCCACCCTTCCTCAGGACCCATATGACGTGTTGCTGGCGGAGCTC
ATCTTTACGACCGAGGACGTGCGGGAAGTGATTTACAAGCGACTGGACGA
CTGTAATGCCGGGTTTGTGGACTTTTTGGAAAGCCGCATCAGCGAGGCCA
CGGACCTGGACGAGCGGCAAGCGCTGCGCTCGCTCGTGGAAATGGTAGAC
GCCGTCAAGAAGGCCGTGGAGCGGAAGAAGGTGGAAGACGCGGCGCGGAT
GAAGGAGGAACAGCAACAGCAGCTGGAGGAAGAAGCTAAGCTTATGGCAG
AAATGGCAGAGGCCAAGAAGCGGGCCCAGACAGTGCAAGAGACTGAAGCG
CAACGTCAGAGCCAGCGTGAGGAGCTCCAGCGTCTGCAGGGTAGGGGTGC
GGGAGATGCGGCGGCG

Coding sequence (CDS) from alignment at scaffold_11:450338..453353+

>mRNA_5737 ID=mRNA_5737|Name=jgi.p|Nanoce1779_2|590171|organism=Nannochloropsis oceanica|type=CDS|length=1776bp|location=Sequence derived from alignment at scaffold_11:450338..453353+ (Nannochloropsis oceanica)
ATGCGGCCGACGCGCTTAGTCCTTTGTGGGCCCTCGACGAGCAGAAGGAG
ACCCGGGCACTGGCTCCCACGTCGTCCTCCTGCCGCAACGACCACAACAA
TAGATCTCTGCTCCATTTCCTCTCGACCTCCCCGCACCTACGCCTGCCAG
CCCTTTCCATTGCCTCCCTCCGTGGTCGAGGCCGCGGCGGCCATCCAGCA
GGGTGAGCAGACACCCACCCAGATCCTGCAGCAATGCCTGCAGCGCCAGC
GAGAGATTGCAGGCCTCAACGCCTTTGTCACCACGATGGAAACAGCAGCC
CTGGCGCAGGCAGCAGCGGCGTCGCAGAGTACAGCAGGAGGGCGGCCGCT
GCACGGGATTCCTATCGCGGTTAAGGACAATTTCTGTACAGCAGGTGTAC
GGACGACAGCCTCGTCCAGAATGCTGGCAGATTTCGTCCCTCCGTACTCG
GCTACTGCCGTGGCACGTCTCGAGGCGGCTGGGGCAGTGGTGGTGGGCAA
GACCAACATGGATGAATTTGGCATGGGCTCAGCCACGCTCTTTTCTCACT
TTGGTGAGACTGTCAGTCCATGGTCACCATCACCCTCATCATCCTCATCA
CCCTCGTCGTCAGCATACTGTGGTGGTCTCCGACTCACAGCTGGGGGCAG
CTCGGGAGGGAGTGCCGTAGCAGTAGCGACGGGTGCGTGTCTGGCGGCCT
TGGGATCGGACACGGGAGGCTCTATACGCCAACCCGCGGCCCTGTGCGGG
CTTGTGGGGCTCAAGCCCAGCTACGGACGCATATCACGCCATGGACTCAT
CGCCTATGCCTCTTCCTTGGACTGCCCTGGCCTGCTGACGCGGACGGTGG
CTGATGCAGCCTTGGTGCTGGACGCGGTAGCGGGACCTGACCCGCTGGGA
GACTCTTCCTGCTGGGACGGGCCGCACCAGTTGTGCTTCACCGAGGCCTT
GCAGACAGCTGGCCTGAACTTTTCACTTCGCGGCCTGAAGGTGGGGCTGG
CCGCGGAATTTGGGGTCCGGGAGCTGGAGGCCAGCACGGTGACAGCATGG
GAGGAAGGGGCGCGACTGCTGCAGGATGCAGGTGCCGAGGTGATGCCTGT
GTCCGTACCCTCTATCCCCCTGGCTCTCCCGGCTTACTTTGTCATTGCCT
GTGCCGAGGCATCCTCAAACCTAGCGCGCTACGACGGCATTCGGTACGGC
CATCGCGCTTCGAGTGCTTGGGCAGACAGTCAGGGAGACAGCAGCAGCAG
TGCGACTGAGAGCGAGAGAGAGGCGAAGGACCAAGGCATGCTGCATAATT
TCATTACTGTCTCCCGCTCCGAAGGTTTCGGGCCCGAGGTCCAGCGCCGC
ATCCTCGCCGGCTGCCGAGTCCTATCGGCTCGCACCTACTCGGCCTACTA
TGAAAAGGCGCTGGCAGCCCGTGTCCGCATCCGTCAGGATATGGCCCAGG
CGATGAGCCAGGTGGACGTCATCCTTACCCCCGTCACGCCCTCGGGCCCC
TTCCCCCTCACCACCCCAGCCGAGCCGGCGGCCCTGATGCTCAACGACAT
CATGACTGTCCCGGCCAGCCTAGCTGGGCTGCCGGCCGTCTCGGTGCCCA
TATCCGTGGTGCCTTCATCCTTCGCAGCCGACGTACCCGTGCCTTTGGGT
TTGCAGCTGATAGGACGTCCCTTCAGGGAGCGGGAGTTGCTGTACGTGGC
GCAGGCTTTGGAGGCCCGGTGTGATTTTGCAAAGCAGATTCCCAAGTATG
TGCTCAAGGGCAGGCGCACGATATGA

Synonyms

Publications