jgi.p|Nanoce1779_2|618345, mRNA_11475 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|618345
Unique NamemRNA_11475
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1774
Alignment locationscaffold_154:23464..25237 -

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Properties
Property NameValue
TranscriptId618431
TrackFilteredModels2
ProteinId618345
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:23464..25237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|618345gene_11475Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|618345mRNA_11475-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11475CDS_11475Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11475 ID=mRNA_11475|Name=jgi.p|Nanoce1779_2|618345|organism=Nannochloropsis oceanica|type=mRNA|length=1774bp
ATGGGAGGGAGGGAGGGAGGGAGAGAGGGACGGACGGACGGATGGAAAAT
GAGAGGGGCAAGAAATATTTTGATGGAGGTGCGGAATGTAGTCAAGCACA
TTTCCAAAACCACCACCATGAAAATTTTGTTTGATGAGGTGCAGCGCGAG
ATGTATGGTCAGGCTTTGAAGCTCGTCAATTTTGCGATGAATCGGTGGAG
TTCTGCGGAGGAATGTTTGCGACGAGTTTTGACGGATTACAAGCCCATTC
TGAGGATTTATCATTCTCGGAGCAGGCACACGGAGCTGAGAAAAGTGAAC
CAGGTCATACTTGAGCTGTATACCTTGATCCGTGCGGTGAACATTGTGCT
GAAGGATATGCAGAGCAATTCACCCGCATCGGGGCTCTGCTTCGTATTGG
GCATTGCTGAGCTCCTTGCGAGCGAGCTATGTTTGGAGCAGCCCCTGCTT
GTGGTGAATCCTGCTATTGAGGCTGGGAAGGAGGAACCGGAGGATAGAGG
GGTGGACGTTGAGGCCTCGGGGGGAGACACTGAAAGCAACCTCCCGCACA
ACCACACGCTTGTTCCGGTAAATGAGCTCACGGAGATAGGGCGGGAGAGT
CGTAGACATCTACGTGCGGGCATTGAGAAGCGTTTTATTCGTGACAGATA
CCTCTCGACGGGTGACTGCGTCAGGGCCTCATATGTATTTGATGCCGCTG
CACTGGCGCACCCTGCAATGTGCAAACTACGACACATGGATAGGATGTGT
GACACGCCCATGTCGCTTGGGGAGGTACAGGAACGCTTTCTACTTTAGTG
CTTGCAAGTGTTTTGGAAAAACTCTATCCGCTCTTTTCACGTTTATAAAA
ATTCACAGGGCCATAATCGACACTATCTGTTGAGGGATCGGACTTCCTGG
CACAGGTCGATAGTGAGGTAATGCCCAAGACTCGATTCTCAAATCAAATA
TTATAACTTGGCCCCCTTCGGATCCGTGCAACCGGCGTGCTAGCCGCAGT
TGCTTGCACTTTTCCGAGTCCCTAGAATCAGGGCTACAGGCTGGTATCAC
GGAGATGTCTGGATGAGGTCTCTGTTGCACACAGGTTGCTTTTTCACTTC
AGGCCTCCTCCTTAGCTTGAAGAATACATGGTCTCCAATAAGAGTCAGGA
GTGCATGTAAAACTGAGCATGGGGAGAGATATTTCGCCTTGACAGCGGTA
CATTCTAAAGACCGAGTTCACCGCCGGACTGTTTACCCGTTTTTCGGCCC
AAAGGCATTCCTTCGTTTAGCCCATTCGTTAGCCACTTTCCGTCCCTATC
CTTCCCCCTCCCTCCTGGACGCTCATCTACCACGAGTCGCTTTCTTGGTC
CGCTCTCCAAAGTGCACTTGCCCTCAAGACCCCTTCGTGCCTGCTCACGT
ATCAATTCGCTGTTTTTATTCTTTTGACAGAGTAGCCACGTACTTGTGTG
CATTAACAAAGAGTATCAGCGTTTACTGGCTGTCTCCGGGCTAAAAGCTT
GGTAGTAGGCTCAATATAAGGGGGGGGGGGAAGGGAAAGAAGGGGAGGAA
AACCCAGAAATTCTTAGCTTTCTTCTTTTCCATATAAATTACCATCCATT
TTCTTAGAGGAAAGGGTATCTCCTCCCCCAAACTCCCTTCCCGAAGAGGG
ACTGCGCCCCAGCCGCGGGCTTGTTAAGAAATAGGGTGGGAAAGAAGCGA
ATTCAAGAAGTCTTACTGCCCTTCGCTCATTCTTCTTTTTGTTGTGCGTC
CGTCTTTCTCTTGCTTGATTTCTA
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protein sequence of jgi.p|Nanoce1779_2|618345

>mRNA_11475-protein ID=mRNA_11475-protein|Name=jgi.p|Nanoce1779_2|618345|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MGGREGGREGRTDGWKMRGARNILMEVRNVVKHISKTTTMKILFDEVQRE
MYGQALKLVNFAMNRWSSAEECLRRVLTDYKPILRIYHSRSRHTELRKVN
QVILELYTLIRAVNIVLKDMQSNSPASGLCFVLGIAELLASELCLEQPLL
VVNPAIEAGKEEPEDRGVDVEASGGDTESNLPHNHTLVPVNELTEIGRES
RRHLRAGIEKRFIRDRYLSTGDCVRASYVFDAAALAHPAMCKLRHMDRMC
DTPMSLGEVQERFLL*
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mRNA from alignment at scaffold_154:23464..25237-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11475 ID=mRNA_11475|Name=jgi.p|Nanoce1779_2|618345|organism=Nannochloropsis oceanica|type=mRNA|length=1774bp|location=Sequence derived from alignment at scaffold_154:23464..25237- (Nannochloropsis oceanica)
ATGGGAGGGAGGGAGGGAGGGAGAGAGGGACGGACGGACGGATGGAAAAT
GAGAGGGGCAAGAAATATTTTGATGGAGGTGCGGAATGTAGTCAAGCACA
TTTCCAAAACCACCACCATGAAAATTTTGTTTGATGAGGTGCAGCGCGAG
ATGTATGGTCAGGCTTTGAAGCTCGTCAATTTTGCGATGAATCGGTGGAG
TTCTGCGGAGGAATGTTTGCGACGAGTTTTGACGGATTACAAGCCCATTC
TGAGGATTTATCATTCTCGGAGCAGGCACACGGAGCTGAGAAAAGTGAAC
CAGGTCATACTTGAGCTGTATACCTTGATCCGTGCGGTGAACATTGTGCT
GAAGGATATGCAGAGCAATTCACCCGCATCGGGGCTCTGCTTCGTATTGG
GCATTGCTGAGCTCCTTGCGAGCGAGCTATGTTTGGAGCAGCCCCTGCTT
GTGGTGAATCCTGCTATTGAGGCTGGGAAGGAGGAACCGGAGGATAGAGG
GGTGGACGTTGAGGCCTCGGGGGGAGACACTGAAAGCAACCTCCCGCACA
ACCACACGCTTGTTCCGGTAAATGAGCTCACGGAGATAGGGCGGGAGAGT
CGTAGACATCTACGTGCGGGCATTGAGAAGCGTTTTATTCGTGACAGATA
CCTCTCGACGGGTGACTGCGTCAGGGCCTCATATGTATTTGATGCCGCTG
CACTGGCGCACCCTGCAATGTGCAAACTACGACACATGGATAGGATGTGT
GACACGCCCATGTCGCTTGGGGAGGTACAGGAACGCTTTCTACTTTAGTG
CTTGCAAGTGTTTTGGAAAAACTCTATCCGCTCTTTTCACGTTTATAAAA
ATTCACAGGGCCATAATCGACACTATCTGTTGAGGGATCGGACTTCCTGG
CACAGGTCGATAGTGAGGTAATGCCCAAGACTCGATTCTCAAATCAAATA
TTATAACTTGGCCCCCTTCGGATCCGTGCAACCGGCGTGCTAGCCGCAGT
TGCTTGCACTTTTCCGAGTCCCTAGAATCAGGGCTACAGGCTGGTATCAC
GGAGATGTCTGGATGAGGTCTCTGTTGCACACAGGTTGCTTTTTCACTTC
AGGCCTCCTCCTTAGCTTGAAGAATACATGGTCTCCAATAAGAGTCAGGA
GTGCATGTAAAACTGAGCATGGGGAGAGATATTTCGCCTTGACAGCGGTA
CATTCTAAAGACCGAGTTCACCGCCGGACTGTTTACCCGTTTTTCGGCCC
AAAGGCATTCCTTCGTTTAGCCCATTCGTTAGCCACTTTCCGTCCCTATC
CTTCCCCCTCCCTCCTGGACGCTCATCTACCACGAGTCGCTTTCTTGGTC
CGCTCTCCAAAGTGCACTTGCCCTCAAGACCCCTTCGTGCCTGCTCACGT
ATCAATTCGCTGTTTTTATTCTTTTGACAGAGTAGCCACGTACTTGTGTG
CATTAACAAAGAGTATCAGCGTTTACTGGCTGTCTCCGGGCTAAAAGCTT
GGTAGTAGGCTCAATATAAGGGGGGGGGGGAAGGGAAAGAAGGGGAGGAA
AACCCAGAAATTCTTAGCTTTCTTCTTTTCCATATAAATTACCATCCATT
TTCTTAGAGGAAAGGGTATCTCCTCCCCCAAACTCCCTTCCCGAAGAGGG
ACTGCGCCCCAGCCGCGGGCTTGTTAAGAAATAGGGTGGGAAAGAAGCGA
ATTCAAGAAGTCTTACTGCCCTTCGCTCATTCTTCTTTTTGTTGTGCGTC
CGTCTTTCTCTTGCTTGATTTCTA
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Coding sequence (CDS) from alignment at scaffold_154:23464..25237-

>mRNA_11475 ID=mRNA_11475|Name=jgi.p|Nanoce1779_2|618345|organism=Nannochloropsis oceanica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_154:23464..25237- (Nannochloropsis oceanica)
ATGGGAGGGAGGGAGGGAGGGAGAGAGGGACGGACGGACGGATGGAAAAT
GAGAGGGGCAAGAAATATTTTGATGGAGGTGCGGAATGTAGTCAAGCACA
TTTCCAAAACCACCACCATGAAAATTTTGTTTGATGAGGTGCAGCGCGAG
ATGTATGGTCAGGCTTTGAAGCTCGTCAATTTTGCGATGAATCGGTGGAG
TTCTGCGGAGGAATGTTTGCGACGAGTTTTGACGGATTACAAGCCCATTC
TGAGGATTTATCATTCTCGGAGCAGGCACACGGAGCTGAGAAAAGTGAAC
CAGGTCATACTTGAGCTGTATACCTTGATCCGTGCGGTGAACATTGTGCT
GAAGGATATGCAGAGCAATTCACCCGCATCGGGGCTCTGCTTCGTATTGG
GCATTGCTGAGCTCCTTGCGAGCGAGCTATGTTTGGAGCAGCCCCTGCTT
GTGGTGAATCCTGCTATTGAGGCTGGGAAGGAGGAACCGGAGGATAGAGG
GGTGGACGTTGAGGCCTCGGGGGGAGACACTGAAAGCAACCTCCCGCACA
ACCACACGCTTGTTCCGGTAAATGAGCTCACGGAGATAGGGCGGGAGAGT
CGTAGACATCTACGTGCGGGCATTGAGAAGCGTTTTATTCGTGACAGATA
CCTCTCGACGGGTGACTGCGTCAGGGCCTCATATGTATTTGATGCCGCTG
CACTGGCGCACCCTGCAATGTGCAAACTACGACACATGGATAGGATGTGT
GACACGCCCATGTCGCTTGGGGAGGTACAGGAACGCTTTCTACTTTAG
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Synonyms
Publications