jgi.p|Nanoce1779_2|512248, mRNA_1843 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|512248
Unique NamemRNA_1843
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length606
Alignment locationscaffold_4:153337..153942 -

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Properties
Property NameValue
TranscriptId512334
TrackFilteredModels2
ProteinId512248
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:153337..153942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|512248gene_1843Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1843CDS_1843Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|512248mRNA_1843-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1843 ID=mRNA_1843|Name=jgi.p|Nanoce1779_2|512248|organism=Nannochloropsis oceanica|type=mRNA|length=606bp
ATGGCCCGTCAACTTCTGCTTAATACCCTTACCTCCGTCTTTGGCGACCT
GGTGGAGGGCTTGACCGAAGAAAACCTCAAGGTCGGGGTCTGGAGTGGGG
AAATTCTCCTGAAGAACCTCCGTCTGAATAGCAAGGCCGTCCAAAAGCTC
AACCTGCCAATCGACGTGCAACACGGCTACATCGGATCTTTTCGGGTGTC
CATTCCCTGGTCTCGTCTCACGTCCGAATCTGTGTCGGTCGAGATTGAGG
ACGTGGTGTTGATTGCTAAGCCTGCCGACCCCATGAAATGGGACCCGGAA
GAGCTCCGACGGTGTAATCTCAACGCCAAGCGCATCTTGCTCGAGAAGGC
GACCGAGGCTGCCCGTGCCTGGAACAGTAATCGTCGCAAATCCCAAGCAG
ACGAGGCAGCCTTGAGTGCTAGTGGCAGTGGGAAGGACTCAGCCGGGTAC
TTTGCCAAGCTCGCCACGCGGATTGCGGACAATTTGTTCGTGTTCCTCAA
GAATGTGCACGTGCGCTTCGAAGACCCCTTTTCTGATCCAACGAACTGTG
TATCAGCTGGCATAATCGTACAGGAATTTCAGGTGCAGTCGACCAACAAT
CAGTGG
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protein sequence of jgi.p|Nanoce1779_2|512248

>mRNA_1843-protein ID=mRNA_1843-protein|Name=jgi.p|Nanoce1779_2|512248|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MARQLLLNTLTSVFGDLVEGLTEENLKVGVWSGEILLKNLRLNSKAVQKL
NLPIDVQHGYIGSFRVSIPWSRLTSESVSVEIEDVVLIAKPADPMKWDPE
ELRRCNLNAKRILLEKATEAARAWNSNRRKSQADEAALSASGSGKDSAGY
FAKLATRIADNLFVFLKNVHVRFEDPFSDPTNCVSAGIIVQEFQVQSTNN
QW
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mRNA from alignment at scaffold_4:153337..153942-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1843 ID=mRNA_1843|Name=jgi.p|Nanoce1779_2|512248|organism=Nannochloropsis oceanica|type=mRNA|length=606bp|location=Sequence derived from alignment at scaffold_4:153337..153942- (Nannochloropsis oceanica)
ATGGCCCGTCAACTTCTGCTTAATACCCTTACCTCCGTCTTTGGCGACCT
GGTGGAGGGCTTGACCGAAGAAAACCTCAAGGTCGGGGTCTGGAGTGGGG
AAATTCTCCTGAAGAACCTCCGTCTGAATAGCAAGGCCGTCCAAAAGCTC
AACCTGCCAATCGACGTGCAACACGGCTACATCGGATCTTTTCGGGTGTC
CATTCCCTGGTCTCGTCTCACGTCCGAATCTGTGTCGGTCGAGATTGAGG
ACGTGGTGTTGATTGCTAAGCCTGCCGACCCCATGAAATGGGACCCGGAA
GAGCTCCGACGGTGTAATCTCAACGCCAAGCGCATCTTGCTCGAGAAGGC
GACCGAGGCTGCCCGTGCCTGGAACAGTAATCGTCGCAAATCCCAAGCAG
ACGAGGCAGCCTTGAGTGCTAGTGGCAGTGGGAAGGACTCAGCCGGGTAC
TTTGCCAAGCTCGCCACGCGGATTGCGGACAATTTGTTCGTGTTCCTCAA
GAATGTGCACGTGCGCTTCGAAGACCCCTTTTCTGATCCAACGAACTGTG
TATCAGCTGGCATAATCGTACAGGAATTTCAGGTGCAGTCGACCAACAAT
CAGTGG
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Coding sequence (CDS) from alignment at scaffold_4:153337..153942-

>mRNA_1843 ID=mRNA_1843|Name=jgi.p|Nanoce1779_2|512248|organism=Nannochloropsis oceanica|type=CDS|length=606bp|location=Sequence derived from alignment at scaffold_4:153337..153942- (Nannochloropsis oceanica)
ATGGCCCGTCAACTTCTGCTTAATACCCTTACCTCCGTCTTTGGCGACCT
GGTGGAGGGCTTGACCGAAGAAAACCTCAAGGTCGGGGTCTGGAGTGGGG
AAATTCTCCTGAAGAACCTCCGTCTGAATAGCAAGGCCGTCCAAAAGCTC
AACCTGCCAATCGACGTGCAACACGGCTACATCGGATCTTTTCGGGTGTC
CATTCCCTGGTCTCGTCTCACGTCCGAATCTGTGTCGGTCGAGATTGAGG
ACGTGGTGTTGATTGCTAAGCCTGCCGACCCCATGAAATGGGACCCGGAA
GAGCTCCGACGGTGTAATCTCAACGCCAAGCGCATCTTGCTCGAGAAGGC
GACCGAGGCTGCCCGTGCCTGGAACAGTAATCGTCGCAAATCCCAAGCAG
ACGAGGCAGCCTTGAGTGCTAGTGGCAGTGGGAAGGACTCAGCCGGGTAC
TTTGCCAAGCTCGCCACGCGGATTGCGGACAATTTGTTCGTGTTCCTCAA
GAATGTGCACGTGCGCTTCGAAGACCCCTTTTCTGATCCAACGAACTGTG
TATCAGCTGGCATAATCGTACAGGAATTTCAGGTGCAGTCGACCAACAAT
CAGTGG
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Synonyms
Publications