jgi.p|Nanoce1779_2|579071, mRNA_2099 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579071
Unique Name	mRNA_2099
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2128
Alignment location	scaffold_4:811439..813566 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579157
Track	FilteredModels2
ProteinId	579071

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:811439..813566 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579071	gene_2099	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579071	mRNA_2099-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2099	CDS_2099	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:811439..813566+
coding sequence from alignment at scaffold_4:811439..813566+

mRNA sequence

>mRNA_2099 ID=mRNA_2099|Name=jgi.p|Nanoce1779_2|579071|organism=Nannochloropsis oceanica|type=mRNA|length=2128bp
ACAGCTTCTCGAGGGTGCGAGGTTGCTTCTGGCTACAGGACTCGAAGCGA
CCATCATGAAGGCTGCATTGCGTAAGAAGGACTTTGTGCCGACCATTATC
ATTATTGTTCTTGCTCTGCTGCTCGGGGCCGTCCTTCAATGTCGTGCCTT
TACGCCGCCCCAACAAGCTCCCATGTCGTCGACCCGCCGACCCCAAGTAT
CTAGCTTCTTGCCACCATCGCGGCGTGGGCCCTCGGCCAGCCGTTCATCG
GTCCTTACACACACCCCTCTACCTTACGCAACTTTGTCCGCGGAGCAAAG
CCCGGTCGACTCTGTATCATCCAGTGCTGTAGCCAGCAGCAACGATGAGA
ACCTTACGCAAGTGATAACGCAACTCCGGGAAGTCATGGACCCGGACCTG
GGGTCGGACGTGGTAACGCTGGGCTTCATCAAGAACCTGACTGTTGCCGG
GGAGACGGGCAGCGTGCGCTTCGTACTGGAGCTTACGACGCCCGCCTGCC
CCGTCAAAGACGACCTCAAGGCCCAGGCGATCCGGGTTGTGGAAAAGTTG
CCTTGGGTGAGCAAGGCTGAGGTCATCCTGTCATCTCGACCCATCGACGC
GGACCGCCCAGCCTCGGCCAATATCAAGGCCACGGGCTTGTCCCTGGTGA
ACAACGTGATAGCCGTCTCCAGCTGCAAAGGCGGTGTGGGTAAGTCCACC
ACGGCCGTGAACCTGGCCTTTGCCCTGGATCGCCAAGGTGCCCGAGTGGG
CATTTTGGACGCGGATATTTACGGGCCAAGCCTTCCCACCATGGTGATCC
CTGACACGGAGGTGGTAGAGTTTGTGGAAAGCCAGATCCGGCCGATGGTG
AAGCTGACCGGCGTGGACGCGGCGGGGCAGCCCAAGGGCGTCAAGCTCAT
GAGCTTTGGGTACGTAAACCCAGGCGCAGCAGCCATTATGCGCGGGCCCA
TGGTCATTCAGCTCATCAACCAGCTCCTGACCCTAACGAGTTGGGGCGAG
CTGGACTACCTGATTCTTGACATGCCGCCCGGAACTGGGGACATCCCTCT
CACCCTTTGCCAGTCCCTCAACATTACGGCCGCTGTAATCGTCACCACCC
CCCAACGCCTGAGCTTCACGGACGTGGTCAAAGGCGTAGATATGTTTGAC
ACGGTGAATGTTCCCTGTGTGGCGGTGGTGGAGAACATGGCCTACGCTGA
CGCCTCGGCCCTGGATGATGCAGCCTCCAGGGGGGCAAGCGACCCTCAGG
GAAGCGCCTCCACCGTGGGCTCGAAGCCGTGGAAACGACTGCGGCAAGAG
ATTGAGGAGGTCATCAAGGCCGCGGAGGACACGAAGACACAAGCGGGGTT
GGTGGACGAACTGCTGGCCACGGTGCTGCGACGCCTGCAGGCGGATCGCG
TCGCCCGGCCTCTCTTTGGACGAGGCCATCGACAGCGGTTGGCCGATATG
TGGGGCCTGACCAACACTGTGTCACTGCCCGTACTGGAGGAGGTGTCAAG
ATCGGGCGACTCGGGAGTGCCCTTGGTCCTTGGCCAGCCAAACTCCGCGC
CCGCTCAAGTTTTCATGGATCTTGCAGGCCGGGTTGTACGGGAGGTGGCG
AAGCTTCGGCACGATCGATCCCGCCTCCGACCCTCTATCACCTATTTGCC
TGAAGAGCACATGATTGCCGTAAAAATGCACGGCTATAGTGATACAGGTG
GGGCGGAGGCGGTAGCACCGCCCCAGAAGATGTCCCCGGCGGCGCTCCGT
CGGCAGTGTCGGTGTGCCATGTGCGTGGAGGAAATGACGGGGAGGCAGAT
TTTGCGGCCTGAGGACGTGCCGGAAGAAATTAAACCGGTGGAAATTGGGG
CGGTGGGTAACTACGCGGTGGGCATTACATGGACAGATGGCCATAAATCT
TTGTTTCCCTACCGGAGCTTTGTGGATGGGTACGATAAGGACATGAAGCC
TGCGAAGGAGAGCAGATAGGAATAAGGGAAGAGGAAAGAAGAGCAAAATA
AAGCAGTGCAAGAATAGCAAGTTACTTGTTGTAGGAGAAAGAGTGCGCTG
CCGTCACGATGGTGGTGATGAACAAAATTGATGCCAAATGAAATGAGAAA
AGAAGGAAACGTCTGACAAAGAATGCGA

protein sequence of jgi.p|Nanoce1779_2|579071

>mRNA_2099-protein ID=mRNA_2099-protein|Name=jgi.p|Nanoce1779_2|579071|organism=Nannochloropsis oceanica|type=polypeptide|length=638bp
MKAALRKKDFVPTIIIIVLALLLGAVLQCRAFTPPQQAPMSSTRRPQVSS
FLPPSRRGPSASRSSVLTHTPLPYATLSAEQSPVDSVSSSAVASSNDENL
TQVITQLREVMDPDLGSDVVTLGFIKNLTVAGETGSVRFVLELTTPACPV
KDDLKAQAIRVVEKLPWVSKAEVILSSRPIDADRPASANIKATGLSLVNN
VIAVSSCKGGVGKSTTAVNLAFALDRQGARVGILDADIYGPSLPTMVIPD
TEVVEFVESQIRPMVKLTGVDAAGQPKGVKLMSFGYVNPGAAAIMRGPMV
IQLINQLLTLTSWGELDYLILDMPPGTGDIPLTLCQSLNITAAVIVTTPQ
RLSFTDVVKGVDMFDTVNVPCVAVVENMAYADASALDDAASRGASDPQGS
ASTVGSKPWKRLRQEIEEVIKAAEDTKTQAGLVDELLATVLRRLQADRVA
RPLFGRGHRQRLADMWGLTNTVSLPVLEEVSRSGDSGVPLVLGQPNSAPA
QVFMDLAGRVVREVAKLRHDRSRLRPSITYLPEEHMIAVKMHGYSDTGGA
EAVAPPQKMSPAALRRQCRCAMCVEEMTGRQILRPEDVPEEIKPVEIGAV
GNYAVGITWTDGHKSLFPYRSFVDGYDKDMKPAKESR*

mRNA from alignment at scaffold_4:811439..813566+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2099 ID=mRNA_2099|Name=jgi.p|Nanoce1779_2|579071|organism=Nannochloropsis oceanica|type=mRNA|length=2128bp|location=Sequence derived from alignment at scaffold_4:811439..813566+ (Nannochloropsis oceanica)
ACAGCTTCTCGAGGGTGCGAGGTTGCTTCTGGCTACAGGACTCGAAGCGA
CCATCATGAAGGCTGCATTGCGTAAGAAGGACTTTGTGCCGACCATTATC
ATTATTGTTCTTGCTCTGCTGCTCGGGGCCGTCCTTCAATGTCGTGCCTT
TACGCCGCCCCAACAAGCTCCCATGTCGTCGACCCGCCGACCCCAAGTAT
CTAGCTTCTTGCCACCATCGCGGCGTGGGCCCTCGGCCAGCCGTTCATCG
GTCCTTACACACACCCCTCTACCTTACGCAACTTTGTCCGCGGAGCAAAG
CCCGGTCGACTCTGTATCATCCAGTGCTGTAGCCAGCAGCAACGATGAGA
ACCTTACGCAAGTGATAACGCAACTCCGGGAAGTCATGGACCCGGACCTG
GGGTCGGACGTGGTAACGCTGGGCTTCATCAAGAACCTGACTGTTGCCGG
GGAGACGGGCAGCGTGCGCTTCGTACTGGAGCTTACGACGCCCGCCTGCC
CCGTCAAAGACGACCTCAAGGCCCAGGCGATCCGGGTTGTGGAAAAGTTG
CCTTGGGTGAGCAAGGCTGAGGTCATCCTGTCATCTCGACCCATCGACGC
GGACCGCCCAGCCTCGGCCAATATCAAGGCCACGGGCTTGTCCCTGGTGA
ACAACGTGATAGCCGTCTCCAGCTGCAAAGGCGGTGTGGGTAAGTCCACC
ACGGCCGTGAACCTGGCCTTTGCCCTGGATCGCCAAGGTGCCCGAGTGGG
CATTTTGGACGCGGATATTTACGGGCCAAGCCTTCCCACCATGGTGATCC
CTGACACGGAGGTGGTAGAGTTTGTGGAAAGCCAGATCCGGCCGATGGTG
AAGCTGACCGGCGTGGACGCGGCGGGGCAGCCCAAGGGCGTCAAGCTCAT
GAGCTTTGGGTACGTAAACCCAGGCGCAGCAGCCATTATGCGCGGGCCCA
TGGTCATTCAGCTCATCAACCAGCTCCTGACCCTAACGAGTTGGGGCGAG
CTGGACTACCTGATTCTTGACATGCCGCCCGGAACTGGGGACATCCCTCT
CACCCTTTGCCAGTCCCTCAACATTACGGCCGCTGTAATCGTCACCACCC
CCCAACGCCTGAGCTTCACGGACGTGGTCAAAGGCGTAGATATGTTTGAC
ACGGTGAATGTTCCCTGTGTGGCGGTGGTGGAGAACATGGCCTACGCTGA
CGCCTCGGCCCTGGATGATGCAGCCTCCAGGGGGGCAAGCGACCCTCAGG
GAAGCGCCTCCACCGTGGGCTCGAAGCCGTGGAAACGACTGCGGCAAGAG
ATTGAGGAGGTCATCAAGGCCGCGGAGGACACGAAGACACAAGCGGGGTT
GGTGGACGAACTGCTGGCCACGGTGCTGCGACGCCTGCAGGCGGATCGCG
TCGCCCGGCCTCTCTTTGGACGAGGCCATCGACAGCGGTTGGCCGATATG
TGGGGCCTGACCAACACTGTGTCACTGCCCGTACTGGAGGAGGTGTCAAG
ATCGGGCGACTCGGGAGTGCCCTTGGTCCTTGGCCAGCCAAACTCCGCGC
CCGCTCAAGTTTTCATGGATCTTGCAGGCCGGGTTGTACGGGAGGTGGCG
AAGCTTCGGCACGATCGATCCCGCCTCCGACCCTCTATCACCTATTTGCC
TGAAGAGCACATGATTGCCGTAAAAATGCACGGCTATAGTGATACAGGTG
GGGCGGAGGCGGTAGCACCGCCCCAGAAGATGTCCCCGGCGGCGCTCCGT
CGGCAGTGTCGGTGTGCCATGTGCGTGGAGGAAATGACGGGGAGGCAGAT
TTTGCGGCCTGAGGACGTGCCGGAAGAAATTAAACCGGTGGAAATTGGGG
CGGTGGGTAACTACGCGGTGGGCATTACATGGACAGATGGCCATAAATCT
TTGTTTCCCTACCGGAGCTTTGTGGATGGGTACGATAAGGACATGAAGCC
TGCGAAGGAGAGCAGATAGGAATAAGGGAAGAGGAAAGAAGAGCAAAATA
AAGCAGTGCAAGAATAGCAAGTTACTTGTTGTAGGAGAAAGAGTGCGCTG
CCGTCACGATGGTGGTGATGAACAAAATTGATGCCAAATGAAATGAGAAA
AGAAGGAAACGTCTGACAAAGAATGCGA

Coding sequence (CDS) from alignment at scaffold_4:811439..813566+

>mRNA_2099 ID=mRNA_2099|Name=jgi.p|Nanoce1779_2|579071|organism=Nannochloropsis oceanica|type=CDS|length=1914bp|location=Sequence derived from alignment at scaffold_4:811439..813566+ (Nannochloropsis oceanica)
ATGAAGGCTGCATTGCGTAAGAAGGACTTTGTGCCGACCATTATCATTAT
TGTTCTTGCTCTGCTGCTCGGGGCCGTCCTTCAATGTCGTGCCTTTACGC
CGCCCCAACAAGCTCCCATGTCGTCGACCCGCCGACCCCAAGTATCTAGC
TTCTTGCCACCATCGCGGCGTGGGCCCTCGGCCAGCCGTTCATCGGTCCT
TACACACACCCCTCTACCTTACGCAACTTTGTCCGCGGAGCAAAGCCCGG
TCGACTCTGTATCATCCAGTGCTGTAGCCAGCAGCAACGATGAGAACCTT
ACGCAAGTGATAACGCAACTCCGGGAAGTCATGGACCCGGACCTGGGGTC
GGACGTGGTAACGCTGGGCTTCATCAAGAACCTGACTGTTGCCGGGGAGA
CGGGCAGCGTGCGCTTCGTACTGGAGCTTACGACGCCCGCCTGCCCCGTC
AAAGACGACCTCAAGGCCCAGGCGATCCGGGTTGTGGAAAAGTTGCCTTG
GGTGAGCAAGGCTGAGGTCATCCTGTCATCTCGACCCATCGACGCGGACC
GCCCAGCCTCGGCCAATATCAAGGCCACGGGCTTGTCCCTGGTGAACAAC
GTGATAGCCGTCTCCAGCTGCAAAGGCGGTGTGGGTAAGTCCACCACGGC
CGTGAACCTGGCCTTTGCCCTGGATCGCCAAGGTGCCCGAGTGGGCATTT
TGGACGCGGATATTTACGGGCCAAGCCTTCCCACCATGGTGATCCCTGAC
ACGGAGGTGGTAGAGTTTGTGGAAAGCCAGATCCGGCCGATGGTGAAGCT
GACCGGCGTGGACGCGGCGGGGCAGCCCAAGGGCGTCAAGCTCATGAGCT
TTGGGTACGTAAACCCAGGCGCAGCAGCCATTATGCGCGGGCCCATGGTC
ATTCAGCTCATCAACCAGCTCCTGACCCTAACGAGTTGGGGCGAGCTGGA
CTACCTGATTCTTGACATGCCGCCCGGAACTGGGGACATCCCTCTCACCC
TTTGCCAGTCCCTCAACATTACGGCCGCTGTAATCGTCACCACCCCCCAA
CGCCTGAGCTTCACGGACGTGGTCAAAGGCGTAGATATGTTTGACACGGT
GAATGTTCCCTGTGTGGCGGTGGTGGAGAACATGGCCTACGCTGACGCCT
CGGCCCTGGATGATGCAGCCTCCAGGGGGGCAAGCGACCCTCAGGGAAGC
GCCTCCACCGTGGGCTCGAAGCCGTGGAAACGACTGCGGCAAGAGATTGA
GGAGGTCATCAAGGCCGCGGAGGACACGAAGACACAAGCGGGGTTGGTGG
ACGAACTGCTGGCCACGGTGCTGCGACGCCTGCAGGCGGATCGCGTCGCC
CGGCCTCTCTTTGGACGAGGCCATCGACAGCGGTTGGCCGATATGTGGGG
CCTGACCAACACTGTGTCACTGCCCGTACTGGAGGAGGTGTCAAGATCGG
GCGACTCGGGAGTGCCCTTGGTCCTTGGCCAGCCAAACTCCGCGCCCGCT
CAAGTTTTCATGGATCTTGCAGGCCGGGTTGTACGGGAGGTGGCGAAGCT
TCGGCACGATCGATCCCGCCTCCGACCCTCTATCACCTATTTGCCTGAAG
AGCACATGATTGCCGTAAAAATGCACGGCTATAGTGATACAGGTGGGGCG
GAGGCGGTAGCACCGCCCCAGAAGATGTCCCCGGCGGCGCTCCGTCGGCA
GTGTCGGTGTGCCATGTGCGTGGAGGAAATGACGGGGAGGCAGATTTTGC
GGCCTGAGGACGTGCCGGAAGAAATTAAACCGGTGGAAATTGGGGCGGTG
GGTAACTACGCGGTGGGCATTACATGGACAGATGGCCATAAATCTTTGTT
TCCCTACCGGAGCTTTGTGGATGGGTACGATAAGGACATGAAGCCTGCGA
AGGAGAGCAGATAG

Synonyms

Publications