jgi.p|Nanoce1779_2|301238, mRNA_9046 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|301238
Unique NamemRNA_9046
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length882
Alignment locationscaffold_40:2838..3858 +

Link to JBrowse

Properties
Property NameValue
TranscriptId301324
TrackFilteredModels2
ProteinId301238
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_40supercontigscaffold_40:2838..3858 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|301238gene_9046Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|301238mRNA_9046-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9046CDS_9046Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9046 ID=mRNA_9046|Name=jgi.p|Nanoce1779_2|301238|organism=Nannochloropsis oceanica|type=mRNA|length=882bp
TCTTTTGGGATTGTTCAGGAGGAAAATGATAGGCAATGAGAAAGCAACTT
GTTTCATCTCTCTTTTCGGGTTGTTCTTTCCTTGTGCAAATCGCTCCTTC
CGCCGCCCTTCCTTTTTACACCATCCTAGTTGGCCGCTTCTCCTACTTTT
CTTAGACCTTTTCCTAGTCTTGCCCCTCTTCTTCTCTTCGGGGCTGTCCC
CCACCTTGCCACTCTTTCTGTCGACCCACCAAGCTCCTAATTGACTCTTT
CTCCGTCGTTTTTCATCCAAGCCCAATGCCATCTTTCACCTCCATCTCTT
TCCCCGCACCTGCTGGCCTGAGGGTATGGAAATAAACATCACTTTATCTC
TATATTCCTTTCGCTGCCATCCCCCTCGTGTTGTTTCCCTCCTCCCTATC
CCGCGATTCCTACGTCTCCTCTCTTCCTCCCTTCCACCTCTCCACCGGCG
TGGAGAGGGAAAGACAATAGCAGCAGCAGCATCCTATCGCACCCGATTTT
CTCTCTGTTCGCACTCTCTTGTTCCTCTCCTCCTTCTGTCTGTATGTAAC
TCTTTCGCAGCCCAAAAGAGAGCAAGAAGTAAGACAAGACGACTTTTTCC
TCTTCTTCAGTCTACCAGTTGGAACACACAAGAAATGCGCACAACACATA
CACACACACACACACACACACACACACACACACACACACACACACACACA
CACACACACACACACACACACACACATCCTAGCCTCAACTCGCTCCCTCC
CTCATCCTCCCTCTGGACGTATGTTTCTTCTATCTAGCGCCACTCGAGCC
TGGTTGCTGCTGGTACTGCTTTTCCCGATGCAACTACGGCTGTTATTGCA
ATATCTGCTGCTGCCAGTTGCTACCCTCTCTT
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protein sequence of jgi.p|Nanoce1779_2|301238

>mRNA_9046-protein ID=mRNA_9046-protein|Name=jgi.p|Nanoce1779_2|301238|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MEINITLSLYSFRCHPPRVVSLLPIPRFLRLLSSSLPPLHRRGEGKTIAA
AASYRTRFSLCSHSLVPLLLLSVCNSFAAQKRARSKTRRLFPLLQSTSWN
TQEMRTTHTHTHTHTHTHTHTHTHTHTHTHTHTHPSLNSLPPSSSLWTYV
SSI*
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mRNA from alignment at scaffold_40:2838..3858+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9046 ID=mRNA_9046|Name=jgi.p|Nanoce1779_2|301238|organism=Nannochloropsis oceanica|type=mRNA|length=1021bp|location=Sequence derived from alignment at scaffold_40:2838..3858+ (Nannochloropsis oceanica)
TCTTTTGGGATTGTTCAGGAGGAAAATGATAGGCAATGAGAAAGCAACTT
GTTTCATCTCTCTTTTCGGGTTGTTCTTTCCTTGTGCAAATCGCTCCTTC
CGCCGCCCTTCCTTTTTACACCATCCTAGTTGGCCGCTTCTCCTACTTTT
CTTAGACCTTTTCCTAGTCTTGCCCCTCTTCTTCTCTTCGGGGCTGTCCC
CCACCTTGCCACTCTTTCTGTCGACCCACCAAGCTCCTAATTGACTCTTT
CTCCGTCGTTTTTCATCCAAGCCCAATGCCATCTTTCACCTCCATCTCTT
TCCCCGCACCTGCTGGCCTGAGGGTATGGAAATAAACATCACTTTATCTC
TATATTCCTTTCGCTGCCATCCCCCTCGTGTTGTTTCCCTCCTCCCTATC
CCGCGATTCCTACGTCTCCTCTCTTCCTCCCTTCCACCTCTCCACCGGCG
TGGAGAGGGAAAGACAATAGCAGCAGCAGCAGCAGCAGCAGCGAGTAGCG
GGCATGCTTGCATATTGTGCATTGTGATTATTTTATTTTTCCCACCCACA
AATGGAAAGCCCGCACGCGAGCTTCCTTCATATTTGCCTACCATCCACCG
CTATCCACTCGACGCATCAGTCCTATCGCACCCGATTTTCTCTCTGTTCG
CACTCTCTTGTTCCTCTCCTCCTTCTGTCTGTATGTAACTCTTTCGCAGC
CCAAAAGAGAGCAAGAAGTAAGACAAGACGACTTTTTCCTCTTCTTCAGT
CTACCAGTTGGAACACACAAGAAATGCGCACAACACATACACACACACAC
ACACACACACACACACACACACACACACACACACACACACACACACACAC
ACACACACACACACATCCTAGCCTCAACTCGCTCCCTCCCTCATCCTCCC
TCTGGACGTATGTTTCTTCTATCTAGCGCCACTCGAGCCTGGTTGCTGCT
GGTACTGCTTTTCCCGATGCAACTACGGCTGTTATTGCAATATCTGCTGC
TGCCAGTTGCTACCCTCTCTT
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Coding sequence (CDS) from alignment at scaffold_40:2838..3858+

>mRNA_9046 ID=mRNA_9046|Name=jgi.p|Nanoce1779_2|301238|organism=Nannochloropsis oceanica|type=CDS|length=924bp|location=Sequence derived from alignment at scaffold_40:2838..3858+ (Nannochloropsis oceanica)
ATGGAAATAAACATCACTTTATCTCTATATTCCTTTCGCTGCCATCCCCC
TCGTGTTGTTTCCCTCCTCCCTATCCCGCGATTCCTACGTCTCCTCTCTT
CCTCCCTTCCACCTCTCCACCGGCGTGGAGAGGGAAAGACAATAGCAGCA
GCAGCATCCTATCGCACCCGATTTTCTCTCTGTTCGCACTCTCTTGTTCC
TCTCCTCCTTCTGTCTGTATGTAACTCTTTCGCAGCCCAAAAGAGAGCAA
GAAGTAAGACAAGACGACTTTTTCCTCTTCTTCAGTCTACCAGTTGGAAC
ACACAAGAAATGCGCACAACACATACACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACACACACACACAC
ATCCTAGCCTCAACTCGCTCCCTCCCTCATCCTCCCTCTGGACGTATGTT
TCTTCTATCTAGATGGAAATAAACATCACTTTATCTCTATATTCCTTTCG
CTGCCATCCCCCTCGTGTTGTTTCCCTCCTCCCTATCCCGCGATTCCTAC
GTCTCCTCTCTTCCTCCCTTCCACCTCTCCACCGGCGTGGAGAGGGAAAG
ACAATAGCAGCAGCAGCATCCTATCGCACCCGATTTTCTCTCTGTTCGCA
CTCTCTTGTTCCTCTCCTCCTTCTGTCTGTATGTAACTCTTTCGCAGCCC
AAAAGAGAGCAAGAAGTAAGACAAGACGACTTTTTCCTCTTCTTCAGTCT
ACCAGTTGGAACACACAAGAAATGCGCACAACACATACACACACACACAC
ACACACACACACACACACACACACACACACACACACACACACACACACAC
ACACACACACACATCCTAGCCTCAACTCGCTCCCTCCCTCATCCTCCCTC
TGGACGTATGTTTCTTCTATCTAG
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Synonyms
Publications