jgi.p|Nanoce1779_2|607884, mRNA_9045 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|607884
Unique Name	mRNA_9045
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2070
Alignment location	scaffold_40:723..2886 +

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Properties


Property Name	Value
TranscriptId	607970
Track	FilteredModels2
ProteinId	607884

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_40	supercontig	scaffold_40:723..2886 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|607884	gene_9045	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|607884	mRNA_9045-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9045	CDS_9045	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_40:723..2886+
coding sequence from alignment at scaffold_40:723..2886+

mRNA sequence

>mRNA_9045 ID=mRNA_9045|Name=jgi.p|Nanoce1779_2|607884|organism=Nannochloropsis oceanica|type=mRNA|length=2070bp
GCATAGAGAGATGATGCCCAAGTTATGCCTTCTCCCCGAAACAGTGCATA
GCATACCCCTCAAACGCCGAGTCCCATTGATCCTTCAATGCGCACAACCC
ACAACCAGCACTTTGTTGCCTCGGAGCTGTCGCACGCTCCTTCTATTCCT
CCCACCGCATACTTGACAGGCGCAAACTAAAGCTGCTTCTGGGCCTTGCT
TCGTCGTGCTCTGGGTTGTTCTGCTATCGCTTCCCGCGCTACGACGTCCA
AGCGCACAATACCGACGCTCATCTCTTTTCTCGAACCTGTCACCATCACA
GTATACTCAGAAGCCTGTCTATTCTTACTTCTCCGCGGTTATCTTTTCAC
CCAAGTCCCCTATTCAGCCACGGCCAGTAACACGCCCCTCATCATGAACC
GCACTGGCACGGGCAACAACCCGGCTGGCGTTGCGGACAATCCCTTCCCG
AAGCAATGGGCATGGCAAATGGGCACGATTCATCTCAAGGGGCAGGTGGT
GCCGGTCAAGCTTCATTTCCTGCTCCCCATTTTCTGGGTCTTGAGCTTGC
TGTCCGGCCTGGCGTATGGAGGGACTTACATTGGTTTTCGGTTTATCATC
GATGTGCTCATCTTATTCGTGACAGTGTTTGCCCACGAGCTCGGGCATAG
TTACGCCGCCATTCAGTACAGTGGGAAATGCCATTGTATTACTCTGTGGC
CCCTTGGGGGTTTTGCGGAAGTCACGCATGAGCAGGGCCCGAAGGAGGAC
TTGTGGGTGTCGTTTGCTGGCCCGTTGACGCACGTGCCGATGTGCGCTAT
TTGGTATGGAATTGTCGCGGCGGTTGTAAGGGGACCCTTCAATATTATGA
CCATCCCGTGCGATCTTTTCAACTCTCAACCCTGCTTCTGGACCAATGTC
TGCGTCTCCGCCGGCTTTTTGAATATCTGCCTGTTTCTCTTCAACCTGTT
GATCCCCGCCTACCCCCTGGACGCCTCCCGCATTCTCGTCGATTTTTTCG
CTTTGTGCAAAGTAGAAGTAAACAAGGCGGCGCTCATAACGGCAGGGATT
TCTATGCCCATCGGTTTGGGGTTGCTATGCTATGGGTTTTGGGGTTTTTC
CAGGGGGGCAGCTAACTATACAATGACTCTTTTTCTTGCTATTTTTATCC
TGTACTCCACCTGGGGGGTGTTTAAGGCCGCCCGATCGGGCAACGCTGCC
AGGCATCCTATGTTTGTTCATTACTATCGCACCAGCGTGCCAGTCGACGC
CTCAAGCAGCAGTAGCAGCAGCAGTAGCACTACGGGTTTTGGAGCAGCGA
ACGCAACAGCTGGAGGGAGAATCATGTCGCTGTGGGGAGGGGGGAGTGCC
ACGGCTGGCGCGGATGGGGATCCTGCTGGTACGGGCGGACCTGTTGCTAC
AAGTGGTGGGGTCACTGCCTTCTCAAAAATGGAAGCAGGCAAGGGGCATC
GGTTGGGAGGGAAGGCGGCACCAACAGGAGTGCCTGCAGCAGCACCAGTG
GGAGGAGGGAGGAGCACGAGTCAATCGGCCTTGTTGTCCTCGCAGGGGTC
CTCGTCGTCATCTAATATTTTGGGAGGGCCACCCGGTGGGAAGGGTGGTC
ATCGGTTGGGCTCAAAATAACAAGGAGGGGGAAAGGAAGGGTAGAAGGAT
GTGAGATGCGATGTGAAAAAATGAGTGTTGCGGAAATTGAGTCTTTCTGT
GACCGTGGTATGCAAACAGAAGAAGCAATCAAGTGAGGGAAAAGAGAAGC
ATAAGGAATCAGTAGTCAAAAAGAGGAAGAAGAGGTCGTGTACATTGATG
GCGGGATCTGCCACGGACTTGAGAGAGACGCCTTATATTTCATAAAGTTA
TCCCTTCCATTACTCTCGTACAATCTCAATATAACAAGAAAAAGAAACAG
ACGAAAGTATGATAAAAAAGAGGCCAAAGCATCAGCGGCACACCATCATC
CAACACAAAAAGAATGAACTAAGAGTGAGGAGGAAACTGATTGACAACGA
GAGGACAAATGATTTCATCTCTCTTTTGGGATTGTTCAGGAGGAAAATGA
TAGGCAATGAGAAAGCAACT

protein sequence of jgi.p|Nanoce1779_2|607884

>mRNA_9045-protein ID=mRNA_9045-protein|Name=jgi.p|Nanoce1779_2|607884|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp
MNRTGTGNNPAGVADNPFPKQWAWQMGTIHLKGQVVPVKLHFLLPIFWVL
SLLSGLAYGGTYIGFRFIIDVLILFVTVFAHELGHSYAAIQYSGKCHCIT
LWPLGGFAEVTHEQGPKEDLWVSFAGPLTHVPMCAIWYGIVAAVVRGPFN
IMTIPCDLFNSQPCFWTNVCVSAGFLNICLFLFNLLIPAYPLDASRILVD
FFALCKVEVNKAALITAGISMPIGLGLLCYGFWGFSRGAANYTMTLFLAI
FILYSTWGVFKAARSGNAARHPMFVHYYRTSVPVDASSSSSSSSSTTGFG
AANATAGGRIMSLWGGGSATAGADGDPAGTGGPVATSGGVTAFSKMEAGK
GHRLGGKAAPTGVPAAAPVGGGRSTSQSALLSSQGSSSSSNILGGPPGGK
GGHRLGSK*

mRNA from alignment at scaffold_40:723..2886+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9045 ID=mRNA_9045|Name=jgi.p|Nanoce1779_2|607884|organism=Nannochloropsis oceanica|type=mRNA|length=2164bp|location=Sequence derived from alignment at scaffold_40:723..2886+ (Nannochloropsis oceanica)
GCATAGAGAGATGATGCCCAAGTTATGCCTTCTCCCCGAAACAGTGCATA
GCATACCCCTCAAACGCCGAGTCCCATTGATCCTTCAATGCGCACAACCC
ACAACCAGCACTTTGTTGCCTCGGAGCTGTCGCACGCTCCTTCTATTCCT
CCCACCGCATACTTGACAGGCGCAAACTAAAGCTGCTTCTGGGCCTTGCT
TCGTCGTGCTCTGGGTTGTTCTGCTATCGCTTCCCGCGCTACGACGTCCA
AGCGCACAATACCGACGCTCATCTCTTTTCTCGAACCTGTCACCATCACA
GTATACTCAGAAGCCTGTCTATTCTTACTTCTCCGCGGTTATCTTTTCAC
CCAAGTCCCCTATTCAGCCACGGCCAGTAACACGCCCCTCATCATGAACC
GCACTGGCACGGGCAACAACCCGGCTGGCGTTGCGGACAATCCCTTCCCG
AAGCAATGGGCATGGCAAATGGGCACGATTCATCTCAAGGGGCAGGTGGT
GCCGGTCAAGCTTCATTTCCTGCTCCCCATTTTCTGGGTCTTGAGCTTGC
TGTCCGGCCTGGCGTATGGAGGGACTTACATTGGTTTTCGGTTTATCATC
GATGTGCTCATCTTATTCGTGACAGTGTTTGCCCACGAGCTCGGGCATAG
TTACGCCGCCATTCAGTACAGTGGGAAATGCCATTGTATTACTCTGTGGC
CCCTTGGGGGTTTTGCGGAAGTCACGCATGAGCAGGGCCCGAAGGAGGAC
TTGTGGGTGTCGTTTGCTGGCCCGTTGACGCACGTGCCGATGTGCGCTAT
TTGGTATGGAATTGTCGCGGCGGTTGTAAGGGGACCCTTCAATATTATGA
GTACGTACGAGGGTTGTGTGTGTCATTATTGAGGGTTTGTTCCATCCAAC
GCAATCCTCAACCTCCTCTCTCTTCTCTCCCCCATCCCCTTTAGCCATCC
CGTGCGATCTTTTCAACTCTCAACCCTGCTTCTGGACCAATGTCTGCGTC
TCCGCCGGCTTTTTGAATATCTGCCTGTTTCTCTTCAACCTGTTGATCCC
CGCCTACCCCCTGGACGCCTCCCGCATTCTCGTCGATTTTTTCGCTTTGT
GCAAAGTAGAAGTAAACAAGGCGGCGCTCATAACGGCAGGGATTTCTATG
CCCATCGGTTTGGGGTTGCTATGCTATGGGTTTTGGGGTTTTTCCAGGGG
GGCAGCTAACTATACAATGACTCTTTTTCTTGCTATTTTTATCCTGTACT
CCACCTGGGGGGTGTTTAAGGCCGCCCGATCGGGCAACGCTGCCAGGCAT
CCTATGTTTGTTCATTACTATCGCACCAGCGTGCCAGTCGACGCCTCAAG
CAGCAGTAGCAGCAGCAGTAGCACTACGGGTTTTGGAGCAGCGAACGCAA
CAGCTGGAGGGAGAATCATGTCGCTGTGGGGAGGGGGGAGTGCCACGGCT
GGCGCGGATGGGGATCCTGCTGGTACGGGCGGACCTGTTGCTACAAGTGG
TGGGGTCACTGCCTTCTCAAAAATGGAAGCAGGCAAGGGGCATCGGTTGG
GAGGGAAGGCGGCACCAACAGGAGTGCCTGCAGCAGCACCAGTGGGAGGA
GGGAGGAGCACGAGTCAATCGGCCTTGTTGTCCTCGCAGGGGTCCTCGTC
GTCATCTAATATTTTGGGAGGGCCACCCGGTGGGAAGGGTGGTCATCGGT
TGGGCTCAAAATAACAAGGAGGGGGAAAGGAAGGGTAGAAGGATGTGAGA
TGCGATGTGAAAAAATGAGTGTTGCGGAAATTGAGTCTTTCTGTGACCGT
GGTATGCAAACAGAAGAAGCAATCAAGTGAGGGAAAAGAGAAGCATAAGG
AATCAGTAGTCAAAAAGAGGAAGAAGAGGTCGTGTACATTGATGGCGGGA
TCTGCCACGGACTTGAGAGAGACGCCTTATATTTCATAAAGTTATCCCTT
CCATTACTCTCGTACAATCTCAATATAACAAGAAAAAGAAACAGACGAAA
GTATGATAAAAAAGAGGCCAAAGCATCAGCGGCACACCATCATCCAACAC
AAAAAGAATGAACTAAGAGTGAGGAGGAAACTGATTGACAACGAGAGGAC
AAATGATTTCATCTCTCTTTTGGGATTGTTCAGGAGGAAAATGATAGGCA
ATGAGAAAGCAACT

Coding sequence (CDS) from alignment at scaffold_40:723..2886+

>mRNA_9045 ID=mRNA_9045|Name=jgi.p|Nanoce1779_2|607884|organism=Nannochloropsis oceanica|type=CDS|length=2454bp|location=Sequence derived from alignment at scaffold_40:723..2886+ (Nannochloropsis oceanica)
ATGAACCGCACTGGCACGGGCAACAACCCGGCTGGCGTTGCGGACAATCC
CTTCCCGAAGCAATGGGCATGGCAAATGGGCACGATTCATCTCAAGGGGC
AGGTGGTGCCGGTCAAGCTTCATTTCCTGCTCCCCATTTTCTGGGTCTTG
AGCTTGCTGTCCGGCCTGGCGTATGGAGGGACTTACATTGGTTTTCGGTT
TATCATCGATGTGCTCATCTTATTCGTGACAGTGTTTGCCCACGAGCTCG
GGCATAGTTACGCCGCCATTCAGTACAGTGGGAAATGCCATTGTATTACT
CTGTGGCCCCTTGGGGGTTTTGCGGAAGTCACGCATGAGCAGGGCCCGAA
GGAGGACTTGTGGGTGTCGTTTGCTGGCCCGTTGACGCACGTGCCGATGT
GCGCTATTTGGTATGGAATTGTCGCGGCGGTTGTAAGGGGACCCTTCAAT
ATTATGACCATCCCGTGCGATCTTTTCAACTCTCAACCCTGCTTCTGGAC
CAATGTCTGCGTCTCCGCCGGCTTTTTGAATATCTGCCTGTTTCTCTTCA
ACCTGTTGATCCCCGCCTACCCCCTGGACGCCTCCCGCATTCTCGTCGAT
TTTTTCGCTTTGTGCAAAGTAGAAGTAAACAAGGCGGCGCTCATAACGGC
AGGGATTTCTATGCCCATCGGTTTGGGGTTGCTATGCTATGGGTTTTGGG
GTTTTTCCAGGGGGGCAGCTAACTATACAATGACTCTTTTTCTTGCTATT
TTTATCCTGTACTCCACCTGGGGGGTGTTTAAGGCCGCCCGATCGGGCAA
CGCTGCCAGGCATCCTATGTTTGTTCATTACTATCGCACCAGCGTGCCAG
TCGACGCCTCAAGCAGCAGTAGCAGCAGCAGTAGCACTACGGGTTTTGGA
GCAGCGAACGCAACAGCTGGAGGGAGAATCATGTCGCTGTGGGGAGGGGG
GAGTGCCACGGCTGGCGCGGATGGGGATCCTGCTGGTACGGGCGGACCTG
TTGCTACAAGTGGTGGGGTCACTGCCTTCTCAAAAATGGAAGCAGGCAAG
GGGCATCGGTTGGGAGGGAAGGCGGCACCAACAGGAGTGCCTGCAGCAGC
ACCAGTGGGAGGAGGGAGGAGCACGAGTCAATCGGCCTTGTTGTCCTCGC
AGGGGTCCTCGTCGTCATCTAATATTTTGGGAGGGCCACCCGGTGGGAAG
GGTGGTCATCGGTTGGGCTCAAAATAAATGAACCGCACTGGCACGGGCAA
CAACCCGGCTGGCGTTGCGGACAATCCCTTCCCGAAGCAATGGGCATGGC
AAATGGGCACGATTCATCTCAAGGGGCAGGTGGTGCCGGTCAAGCTTCAT
TTCCTGCTCCCCATTTTCTGGGTCTTGAGCTTGCTGTCCGGCCTGGCGTA
TGGAGGGACTTACATTGGTTTTCGGTTTATCATCGATGTGCTCATCTTAT
TCGTGACAGTGTTTGCCCACGAGCTCGGGCATAGTTACGCCGCCATTCAG
TACAGTGGGAAATGCCATTGTATTACTCTGTGGCCCCTTGGGGGTTTTGC
GGAAGTCACGCATGAGCAGGGCCCGAAGGAGGACTTGTGGGTGTCGTTTG
CTGGCCCGTTGACGCACGTGCCGATGTGCGCTATTTGGTATGGAATTGTC
GCGGCGGTTGTAAGGGGACCCTTCAATATTATGACCATCCCGTGCGATCT
TTTCAACTCTCAACCCTGCTTCTGGACCAATGTCTGCGTCTCCGCCGGCT
TTTTGAATATCTGCCTGTTTCTCTTCAACCTGTTGATCCCCGCCTACCCC
CTGGACGCCTCCCGCATTCTCGTCGATTTTTTCGCTTTGTGCAAAGTAGA
AGTAAACAAGGCGGCGCTCATAACGGCAGGGATTTCTATGCCCATCGGTT
TGGGGTTGCTATGCTATGGGTTTTGGGGTTTTTCCAGGGGGGCAGCTAAC
TATACAATGACTCTTTTTCTTGCTATTTTTATCCTGTACTCCACCTGGGG
GGTGTTTAAGGCCGCCCGATCGGGCAACGCTGCCAGGCATCCTATGTTTG
TTCATTACTATCGCACCAGCGTGCCAGTCGACGCCTCAAGCAGCAGTAGC
AGCAGCAGTAGCACTACGGGTTTTGGAGCAGCGAACGCAACAGCTGGAGG
GAGAATCATGTCGCTGTGGGGAGGGGGGAGTGCCACGGCTGGCGCGGATG
GGGATCCTGCTGGTACGGGCGGACCTGTTGCTACAAGTGGTGGGGTCACT
GCCTTCTCAAAAATGGAAGCAGGCAAGGGGCATCGGTTGGGAGGGAAGGC
GGCACCAACAGGAGTGCCTGCAGCAGCACCAGTGGGAGGAGGGAGGAGCA
CGAGTCAATCGGCCTTGTTGTCCTCGCAGGGGTCCTCGTCGTCATCTAAT
ATTTTGGGAGGGCCACCCGGTGGGAAGGGTGGTCATCGGTTGGGCTCAAA
ATAA

Synonyms

Publications