jgi.p|Nanoce1779_2|581719, mRNA_2820 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581719
Unique Name	mRNA_2820
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1993
Alignment location	scaffold_5:1283087..1285079 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	581805
Track	FilteredModels2
ProteinId	581719

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:1283087..1285079 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581719	gene_2820	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581719	mRNA_2820-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2820	CDS_2820	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:1283087..1285079+
coding sequence from alignment at scaffold_5:1283087..1285079+

mRNA sequence

>mRNA_2820 ID=mRNA_2820|Name=jgi.p|Nanoce1779_2|581719|organism=Nannochloropsis oceanica|type=mRNA|length=1993bp
ACAGCCTCTACCTCGACGCCATATACAGGCGATTCGCTATACTGTTATCT
CACTACGACTTTCCAGATTTTGACATAATCGTAAACTTGAAGGATGAACC
TGCTGAAGAAACCAAGGCTTACGATGATTTTCCAGCTCCAATATTCTCTT
TTCAGACCACAGATGGTCATCTGGATCTACCGTTCACTTACTTGACCATG
TTCACGCAAAATTTTACTCAACCTATATACGACTGGATGGAAAGCAAAGA
GGTAGAGGAGATGGCGGCCATACCTTGGGAGAAGAAGCTAGATATAGCAA
TCTGGCGTGGAACACAAACAGGAGGGGCTTATACGCTAGAAAATTGGAGA
AATTTTCCGAGATCTCAACTTGTTCTATTTTCGCAACAGCATTCTGAACT
TATTGATGCTCGTTTTAGTGGCTTTACTCAGGTTACAGAAGATGCCAGAA
AAGACATTTTGAACGCATCTGCCGTGGGGGATGCAATATCGATGTTGGAA
TTCGGACGTTACAAGTACATAATCAACATGGATGGAAATGGTTGGGCGGC
ACGACTGCCCTTCCTTTTTGCACTAGGCTCGACGGTGCTAAAGGAGGAGT
CCAACTATATGGAATTCTGGTATTCGTCACTGAAGCCGTTTGTACACTAC
GTGCCCTTTAAAAGCGACCTGTCTGACCTTGAAGATAATATCAAATGGAT
GAGAGAGCATCCGAGGATGGCCAAGAGGATTGGTGAACATGGCCGTCAAT
TTGTTTTGGAGACTTTACGAGAGGAAGCGATCAACGGATATGCTGGTTGT
CTTTTAACCACCTACGCCCAGCGGATTTTTTACGATATTGAAAAGGTCGA
AGGCGCAATAGAGGTAGATTTGACAAGATTCTCGTAGACTTCCCCTATGA
GTTGCGGTTGTGCATGATCTCCAAGAGGGACAATTGACTTGAAGTTGGAA
GAAAATGAAGGAGAAGATGATTATAAGGCTAGCTAACAGCCAAAAGCGGA
GTGTGGTAAATGCTCGTCGATTCTCCCACACCACACATGATCTTTAGCAA
GCAACGACGATAAGTCGTCGCAGTCGTGCAGCAATCATCAAGGGACGACT
ATTCAGTATTCCGCAATCGACAACAACTCAGATCCTTCGCAATTATTCAT
ATTTTTTGTCTAACTACGATTACACGCCACAAAAAACAAAGGCTGTGATT
CTCTTAGTGTGATTGACCCCGCCGTCATAAGAGGAAGAATGAGATAGGGG
ACATGGAGGAAGCAGAAGCGGGGCCTGTGCTGCCCCGCGGTCACACGGCT
GTGGAGCTGCTTGGACAGAGGACGGAACAAAGAGCAGGAGGCCTCTGCGC
GAGGATATGATTAAGCATTTTGTGAAGGACATGTACCATTACACTGGAGA
CTGTGAAAACCCCTCCTATCTCTTTGATGACCCTGGCCTACTGACAATGA
AGTGAGTGAATAAGATGGCGGACACCAAAGAGCACGCTACGCCAGTTGAA
GATAAGAAAAATGCAATCATTGTTATGTTAGAGGGGTTTCATTTCAACAG
AGGGGTGGGGGGGATGAAGGTGAGGAGTTAGAGGAAGAGGACTTTTCGGC
ATCCAGCCGACCGCCACAGAGGACCTCCCAAGACTACACAAAGACGCCCC
TCTCTGACTTCATGGGGCTGACTGCTACGGAGGCGAAAGAGGCCATGTCA
TAACGAACACATAACAAGGAGGAATTTTAAAAGATCTTTCATTTGGATGA
GGGTTAGAGGGTCGGTGGCGAAGGAGGGGGAGAAGGAGGACGACGCCGAA
GCAGAAGAGAACGATTAATAGGCGATGGAAATAACGAGGTATGGAGCTTA
CGATGTTGCTAATGACGATGAGATTGACGACGATCATGATGATAATGATG
ATGGCGATGAATGATTAAGCATAGGTGGCGGATTGAAAAAGGGAAGGAAG
AACAAGGAGGAAAGAAAAAAGGAGGAAGGGATAGAGATGTGAC

protein sequence of jgi.p|Nanoce1779_2|581719

>mRNA_2820-protein ID=mRNA_2820-protein|Name=jgi.p|Nanoce1779_2|581719|organism=Nannochloropsis oceanica|type=polypeptide|length=230bp
MFTQNFTQPIYDWMESKEVEEMAAIPWEKKLDIAIWRGTQTGGAYTLENW
RNFPRSQLVLFSQQHSELIDARFSGFTQVTEDARKDILNASAVGDAISML
EFGRYKYIINMDGNGWAARLPFLFALGSTVLKEESNYMEFWYSSLKPFVH
YVPFKSDLSDLEDNIKWMREHPRMAKRIGEHGRQFVLETLREEAINGYAG
CLLTTYAQRIFYDIEKVEGAIEVDLTRFS*

mRNA from alignment at scaffold_5:1283087..1285079+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2820 ID=mRNA_2820|Name=jgi.p|Nanoce1779_2|581719|organism=Nannochloropsis oceanica|type=mRNA|length=1993bp|location=Sequence derived from alignment at scaffold_5:1283087..1285079+ (Nannochloropsis oceanica)
ACAGCCTCTACCTCGACGCCATATACAGGCGATTCGCTATACTGTTATCT
CACTACGACTTTCCAGATTTTGACATAATCGTAAACTTGAAGGATGAACC
TGCTGAAGAAACCAAGGCTTACGATGATTTTCCAGCTCCAATATTCTCTT
TTCAGACCACAGATGGTCATCTGGATCTACCGTTCACTTACTTGACCATG
TTCACGCAAAATTTTACTCAACCTATATACGACTGGATGGAAAGCAAAGA
GGTAGAGGAGATGGCGGCCATACCTTGGGAGAAGAAGCTAGATATAGCAA
TCTGGCGTGGAACACAAACAGGAGGGGCTTATACGCTAGAAAATTGGAGA
AATTTTCCGAGATCTCAACTTGTTCTATTTTCGCAACAGCATTCTGAACT
TATTGATGCTCGTTTTAGTGGCTTTACTCAGGTTACAGAAGATGCCAGAA
AAGACATTTTGAACGCATCTGCCGTGGGGGATGCAATATCGATGTTGGAA
TTCGGACGTTACAAGTACATAATCAACATGGATGGAAATGGTTGGGCGGC
ACGACTGCCCTTCCTTTTTGCACTAGGCTCGACGGTGCTAAAGGAGGAGT
CCAACTATATGGAATTCTGGTATTCGTCACTGAAGCCGTTTGTACACTAC
GTGCCCTTTAAAAGCGACCTGTCTGACCTTGAAGATAATATCAAATGGAT
GAGAGAGCATCCGAGGATGGCCAAGAGGATTGGTGAACATGGCCGTCAAT
TTGTTTTGGAGACTTTACGAGAGGAAGCGATCAACGGATATGCTGGTTGT
CTTTTAACCACCTACGCCCAGCGGATTTTTTACGATATTGAAAAGGTCGA
AGGCGCAATAGAGGTAGATTTGACAAGATTCTCGTAGACTTCCCCTATGA
GTTGCGGTTGTGCATGATCTCCAAGAGGGACAATTGACTTGAAGTTGGAA
GAAAATGAAGGAGAAGATGATTATAAGGCTAGCTAACAGCCAAAAGCGGA
GTGTGGTAAATGCTCGTCGATTCTCCCACACCACACATGATCTTTAGCAA
GCAACGACGATAAGTCGTCGCAGTCGTGCAGCAATCATCAAGGGACGACT
ATTCAGTATTCCGCAATCGACAACAACTCAGATCCTTCGCAATTATTCAT
ATTTTTTGTCTAACTACGATTACACGCCACAAAAAACAAAGGCTGTGATT
CTCTTAGTGTGATTGACCCCGCCGTCATAAGAGGAAGAATGAGATAGGGG
ACATGGAGGAAGCAGAAGCGGGGCCTGTGCTGCCCCGCGGTCACACGGCT
GTGGAGCTGCTTGGACAGAGGACGGAACAAAGAGCAGGAGGCCTCTGCGC
GAGGATATGATTAAGCATTTTGTGAAGGACATGTACCATTACACTGGAGA
CTGTGAAAACCCCTCCTATCTCTTTGATGACCCTGGCCTACTGACAATGA
AGTGAGTGAATAAGATGGCGGACACCAAAGAGCACGCTACGCCAGTTGAA
GATAAGAAAAATGCAATCATTGTTATGTTAGAGGGGTTTCATTTCAACAG
AGGGGTGGGGGGGATGAAGGTGAGGAGTTAGAGGAAGAGGACTTTTCGGC
ATCCAGCCGACCGCCACAGAGGACCTCCCAAGACTACACAAAGACGCCCC
TCTCTGACTTCATGGGGCTGACTGCTACGGAGGCGAAAGAGGCCATGTCA
TAACGAACACATAACAAGGAGGAATTTTAAAAGATCTTTCATTTGGATGA
GGGTTAGAGGGTCGGTGGCGAAGGAGGGGGAGAAGGAGGACGACGCCGAA
GCAGAAGAGAACGATTAATAGGCGATGGAAATAACGAGGTATGGAGCTTA
CGATGTTGCTAATGACGATGAGATTGACGACGATCATGATGATAATGATG
ATGGCGATGAATGATTAAGCATAGGTGGCGGATTGAAAAAGGGAAGGAAG
AACAAGGAGGAAAGAAAAAAGGAGGAAGGGATAGAGATGTGAC

Coding sequence (CDS) from alignment at scaffold_5:1283087..1285079+

>mRNA_2820 ID=mRNA_2820|Name=jgi.p|Nanoce1779_2|581719|organism=Nannochloropsis oceanica|type=CDS|length=690bp|location=Sequence derived from alignment at scaffold_5:1283087..1285079+ (Nannochloropsis oceanica)
ATGTTCACGCAAAATTTTACTCAACCTATATACGACTGGATGGAAAGCAA
AGAGGTAGAGGAGATGGCGGCCATACCTTGGGAGAAGAAGCTAGATATAG
CAATCTGGCGTGGAACACAAACAGGAGGGGCTTATACGCTAGAAAATTGG
AGAAATTTTCCGAGATCTCAACTTGTTCTATTTTCGCAACAGCATTCTGA
ACTTATTGATGCTCGTTTTAGTGGCTTTACTCAGGTTACAGAAGATGCCA
GAAAAGACATTTTGAACGCATCTGCCGTGGGGGATGCAATATCGATGTTG
GAATTCGGACGTTACAAGTACATAATCAACATGGATGGAAATGGTTGGGC
GGCACGACTGCCCTTCCTTTTTGCACTAGGCTCGACGGTGCTAAAGGAGG
AGTCCAACTATATGGAATTCTGGTATTCGTCACTGAAGCCGTTTGTACAC
TACGTGCCCTTTAAAAGCGACCTGTCTGACCTTGAAGATAATATCAAATG
GATGAGAGAGCATCCGAGGATGGCCAAGAGGATTGGTGAACATGGCCGTC
AATTTGTTTTGGAGACTTTACGAGAGGAAGCGATCAACGGATATGCTGGT
TGTCTTTTAACCACCTACGCCCAGCGGATTTTTTACGATATTGAAAAGGT
CGAAGGCGCAATAGAGGTAGATTTGACAAGATTCTCGTAG

Synonyms

Publications