jgi.p|Nanoce1779_2|613572, mRNA_10682 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|613572
Unique NamemRNA_10682
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length673
Alignment locationscaffold_76:27107..28349 -

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Properties
Property NameValue
TranscriptId613658
TrackFilteredModels2
ProteinId613572
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_76supercontigscaffold_76:27107..28349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613572gene_10682Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613572mRNA_10682-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10682CDS_10682Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10682 ID=mRNA_10682|Name=jgi.p|Nanoce1779_2|613572|organism=Nannochloropsis oceanica|type=mRNA|length=673bp
AACAGACACAGCGAAGGCCCTTCCCACACGCGAGGCCTCATCATCATGCG
CGCCCATCTCTCCCTCCTCCTCCTGGCCCTTGTGGCAGCCTTCATCGGCC
TGGCTACCGTCACGTCTGCGGCCGACCCCAAGGACTGCGAAGTCTGTATC
GGCGTGCTCGAGAAAATCGATGCGGGCCTCGACGCCAAGGCCAAGAAGAA
CAAGCTCGCCATCGAGGAAGCCATTGAGACCTACTGCACCCGCAAAGACA
TCGACAACAAGGAGAAGAAACTCTGTTATTTCCTCAAGCCCATCAAGAGG
GATGTGTCTCAGCCGTTTTCGACGGGCATGCCCAAGGCCAAGGTCTGCGA
GCGGCTCAAAAAGAAGAGTGCCGAGATCTGCACGATCAAGTATCCCGTCA
AGGTAGACAGCCAGACGGACTACAGCAAGCTTCGTGTCAAGGAGCTGAAG
GCTATCCTATCTGAGCGAGGGGTAGAGTGCACGGGGTGTCTGGAAAAGCC
AGACTTCATTAAGAAGTGTGAGGAGACTGCGCATTTGTCTGCTGAGCTCT
AAAGAAAGAGGAAAGGACGGGAGGAAAGGGCGTAGGGAGGGAGATAAAGC
AACAATGCTGTGTGGAGAGTGCCAGAGCGATGGTAAGGCGCTGCATGTCT
CCTTCAAAGAGTTGCGATTTTGT
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protein sequence of jgi.p|Nanoce1779_2|613572

>mRNA_10682-protein ID=mRNA_10682-protein|Name=jgi.p|Nanoce1779_2|613572|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
MRAHLSLLLLALVAAFIGLATVTSAADPKDCEVCIGVLEKIDAGLDAKAK
KNKLAIEEAIETYCTRKDIDNKEKKLCYFLKPIKRDVSQPFSTGMPKAKV
CERLKKKSAEICTIKYPVKVDSQTDYSKLRVKELKAILSERGVECTGCLE
KPDFIKKCEETAHLSAEL*
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mRNA from alignment at scaffold_76:27107..28349-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10682 ID=mRNA_10682|Name=jgi.p|Nanoce1779_2|613572|organism=Nannochloropsis oceanica|type=mRNA|length=1243bp|location=Sequence derived from alignment at scaffold_76:27107..28349- (Nannochloropsis oceanica)
AACAGACACAGCGAAGGCCCTTCCCACACGCGAGGCCTCATCATCATGCG
CGCCCATCTCTCCCTCCTCCTCCTGGCCCTTGTGGCAGCCTTCATCGGCC
TGGCTACCGTCACGTCTGCGGCCGACCCCAAGGACTGCGAAGGTAAGGAG
ACGTGTGAAATAGCTGATCCAATGCATGGTTGGTATTCTTGGAGGATCAA
GGACCTGTTGGGCGTTTTTGAAATCAGGAGCGTGCGCTTCCCTACTTCCA
GAAAAGTGGCGGGGAAGAGGAGTCCTGTTACATTTTACATCGACACACAA
ACCACCAGTCGAATCATTCAGAGGCATTTTCTTGTCGTCGGGAAAGAGGC
TTTGACAACACTTGCTCCCACCCAGCTTTTCACACTTTTTCACCAGCAGC
CCTCTGATCGTGTACCAAGGAGAGCGATCATTTCCCCCAGACCCTCATAT
ACACGACACTTTCCCCTACCTCTATTAGGCATTGCGAATTGAGGGTTTTG
ACCAAGAGTTTAACTGTCACCACCATCCGCTTTCTTGCCCTAAACCCCTC
TCTCCCCCCTCTCCCTCCATGCCCATAGTCTGTATCGGCGTGCTCGAGAA
AATCGATGCGGGCCTCGACGCCAAGGCCAAGAAGAACAAGCTCGCCATCG
AGGAAGCCATTGAGACCTACTGCACCCGCAAAGACATCGACAACAAGGAG
AAGAAACTCTGTTATTTCCTCAAGCCCATCAAGAGGGATGTGTCTCAGCC
GTTTTCGACGGGCATGCCCAAGGCCAAGGTCTGCGAGCGGCTCAAAAAGA
AGAGTGCCGAGATCTGCACGATCAAGTATCGTAAGTACTCAAAGAGAGGG
AAGGAGACAGGAAGGGTCAGCATATTGTTATGGATGCTTGTAGAGCTAAC
AAAAAATAATGATGCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCTCTCC
CCCTCCCCCTTCAGCCGTCAAGGTAGACAGCCAGACGGACTACAGCAAGC
TTCGTGTCAAGGAGCTGAAGGCTATCCTATCTGAGCGAGGGGTAGAGTGC
ACGGGGTGTCTGGAAAAGCCAGACTTCATTAAGAAGTGTGAGGAGACTGC
GCATTTGTCTGCTGAGCTCTAAAGAAAGAGGAAAGGACGGGAGGAAAGGG
CGTAGGGAGGGAGATAAAGCAACAATGCTGTGTGGAGAGTGCCAGAGCGA
TGGTAAGGCGCTGCATGTCTCCTTCAAAGAGTTGCGATTTTGT
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Coding sequence (CDS) from alignment at scaffold_76:27107..28349-

>mRNA_10682 ID=mRNA_10682|Name=jgi.p|Nanoce1779_2|613572|organism=Nannochloropsis oceanica|type=CDS|length=1521bp|location=Sequence derived from alignment at scaffold_76:27107..28349- (Nannochloropsis oceanica)
CCGTCAAGGTAGACAGCCAGACGGACTACAGCAAGCTTCGTGTCAAGGAG
CTGAAGGCTATCCTATCTGAGCGAGGGGTAGAGTGCACGGGGTGTCTGGA
AAAGCCAGACTTCATTAAGAAGTGTGAGGAGACTGCGCATTTGTCTGCTG
AGCTCTAATCTGTATCGGCGTGCTCGAGAAAATCGATGCGGGCCTCGACG
CCAAGGCCAAGAAGAACAAGCTCGCCATCGAGGAAGCCATTGAGACCTAC
TGCACCCGCAAAGACATCGACAACAAGGAGAAGAAACTCTGTTATTTCCT
CAAGCCCATCAAGAGGGATGTGTCTCAGCCGTTTTCGACGGGCATGCCCA
AGGCCAAGGTCTGCGAGCGGCTCAAAAAGAAGAGTGCCGAGATCTGCACG
ATCAAGTATCATGCGCGCCCATCTCTCCCTCCTCCTCCTGGCCCTTGTGG
CAGCCTTCATCGGCCTGGCTACCGTCACGTCTGCGGCCGACCCCAAGGAC
TGCGAAGCCGTCAAGGTAGACAGCCAGACGGACTACAGCAAGCTTCGTGT
CAAGGAGCTGAAGGCTATCCTATCTGAGCGAGGGGTAGAGTGCACGGGGT
GTCTGGAAAAGCCAGACTTCATTAAGAAGTGTGAGGAGACTGCGCATTTG
TCTGCTGAGCTCTAATCTGTATCGGCGTGCTCGAGAAAATCGATGCGGGC
CTCGACGCCAAGGCCAAGAAGAACAAGCTCGCCATCGAGGAAGCCATTGA
GACCTACTGCACCCGCAAAGACATCGACAACAAGGAGAAGAAACTCTGTT
ATTTCCTCAAGCCCATCAAGAGGGATGTGTCTCAGCCGTTTTCGACGGGC
ATGCCCAAGGCCAAGGTCTGCGAGCGGCTCAAAAAGAAGAGTGCCGAGAT
CTGCACGATCAAGTATCATGCGCGCCCATCTCTCCCTCCTCCTCCTGGCC
CTTGTGGCAGCCTTCATCGGCCTGGCTACCGTCACGTCTGCGGCCGACCC
CAAGGACTGCGAAGCCGTCAAGGTAGACAGCCAGACGGACTACAGCAAGC
TTCGTGTCAAGGAGCTGAAGGCTATCCTATCTGAGCGAGGGGTAGAGTGC
ACGGGGTGTCTGGAAAAGCCAGACTTCATTAAGAAGTGTGAGGAGACTGC
GCATTTGTCTGCTGAGCTCTAATCTGTATCGGCGTGCTCGAGAAAATCGA
TGCGGGCCTCGACGCCAAGGCCAAGAAGAACAAGCTCGCCATCGAGGAAG
CCATTGAGACCTACTGCACCCGCAAAGACATCGACAACAAGGAGAAGAAA
CTCTGTTATTTCCTCAAGCCCATCAAGAGGGATGTGTCTCAGCCGTTTTC
GACGGGCATGCCCAAGGCCAAGGTCTGCGAGCGGCTCAAAAAGAAGAGTG
CCGAGATCTGCACGATCAAGTATCATGCGCGCCCATCTCTCCCTCCTCCT
CCTGGCCCTTGTGGCAGCCTTCATCGGCCTGGCTACCGTCACGTCTGCGG
CCGACCCCAAGGACTGCGAAG
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Synonyms
Publications