jgi.p|Nanoce1779_2|634506, mRNA_11194 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|634506
Unique NamemRNA_11194
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length768
Alignment locationscaffold_87:49686..50729 -

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Properties
Property NameValue
TranscriptId634592
TrackFilteredModels2
ProteinId634506
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_87supercontigscaffold_87:49686..50729 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|634506gene_11194Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|634506mRNA_11194-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11194CDS_11194Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11194 ID=mRNA_11194|Name=jgi.p|Nanoce1779_2|634506|organism=Nannochloropsis oceanica|type=mRNA|length=768bp
ACAGCTTACCTCAAAATGCAGCACCTGGAGGAAGACGGCGAGTTAGCCCG
GATGCTTGCCGAACAGGAAGCGTTCCTAGCGTCCCAAGAAGCACCGGCCG
CAAAAGTAGTGCGGCGGCAGGAGGGCGACAATGGAACTGAAGCAGCAGCA
GCGGCCTCCAACCAGCCACTGCAGCAGCAGCAGCCAGCAGCACCACTATT
GTCAGAGCCCTCAGAGCCCTCATTGCCAGTTTTGATCGGCTCAGTGGTGG
AAAAGACGGGGAAAGTGACTTGCCTGCCGTTGCCATTAAAGATTGGAGGA
GGTGTGCGTGGCTTCCCTAAGGCATTGCCACGAAAGGAGACGGCACCAGG
ACCTGCTCCAGGAGGGAGGGAGAGAGGCATGGGTCCCACAAAAAGCATGG
CACCACCAGCATCATATATTACGTCTGACACGAGGAATGCGAATAAAAGC
GAAGTAGGGGAGGGCAAGGAGGAGGAGGAGGAAGTGGAGGAGAAGGAAGT
AGAGGGGTTGGAGGAGGAGAGGGCACGTATGGAGGTAGGTCTCTCTCTGC
TCTTGTCGTTCCAATTAAATCACACGGAAGGAAATGCCCTCTCTTGGACC
TTCCCTTTCATTTGTCTTTCACCTTAGCTGCCTATGTTATTTAATTTAAG
ATGTATAAATGCGGAGTAGTGATCAATATCAAAGAAGAGGCAGCGTCCCC
TCGCTCTGCCACGCCATGACCCATCCCTTCCTCCCTCCCTTCCTTCCTCC
CTCCCTCCCTCCAGGCTC
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protein sequence of jgi.p|Nanoce1779_2|634506

>mRNA_11194-protein ID=mRNA_11194-protein|Name=jgi.p|Nanoce1779_2|634506|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MQHLEEDGELARMLAEQEAFLASQEAPAAKVVRRQEGDNGTEAAAAASNQ
PLQQQQPAAPLLSEPSEPSLPVLIGSVVEKTGKVTCLPLPLKIGGGVRGF
PKALPRKETAPGPAPGGRERGMGPTKSMAPPASYITSDTRNANKSEVGEG
KEEEEEVEEKEVEGLEEERARMEVGLSLLLSFQLNHTEGNALSWTFPFIC
LSP*
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mRNA from alignment at scaffold_87:49686..50729-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11194 ID=mRNA_11194|Name=jgi.p|Nanoce1779_2|634506|organism=Nannochloropsis oceanica|type=mRNA|length=1044bp|location=Sequence derived from alignment at scaffold_87:49686..50729- (Nannochloropsis oceanica)
ACAGCTTACCTCAAAATGCAGCACCTGGAGGAAGACGGCGAGTTAGCCCG
GATGCTTGCCGAACAGGAAGCGTTCCTAGCGTCCCAAGAAGCACCGGCCG
CAAAAGTAGTGCGGCGGCAGGAGGGCGACAATGGTACGTATGGGGAGAGG
CATTAAAGGCGTCGGAATATGAACAGGGTGGCGGCAGGGTGGGTTAAAAA
ACAACGGCTCGATGCGCAAACCACAGGCTTTCCCAATTTAACGTGACTAC
CTCCCTAACATCATCGCGCAGGAACTGAAGCAGCAGCAGCGGCCTCCAAC
CAGCCACTGCAGCAGCAGCAGCCAGCAGCACCACTATTGTCAGAGCCCTC
AGAGCCCTCATTGCCAGTTTTGATCGGCTCAGTGGTGGAAAAGACGGGGA
AAGGTATTGCTTTGAAGGAGGGGCCGAAGGGGGCGAAGGGGAGGGGGGGA
CTGGAGGCGACGCGCACCTTCTGACGTTTTTACCAGCCGTGTCAATGCTC
ACAAGCCTCTCATTTCGATTTCTTCAATTTCTAATTTTCAGTGACTTGCC
TGCCGTTGCCATTAAAGATTGGAGGAGGTGTGCGTGGCTTCCCTAAGGCA
TTGCCACGAAAGGAGACGGCACCAGGACCTGCTCCAGGAGGGAGGGAGAG
AGGCATGGGTCCCACAAAAAGCATGGCACCACCAGCATCATATATTACGT
CTGACACGAGGAATGCGAATAAAAGCGAAGTAGGGGAGGGCAAGGAGGAG
GAGGAGGAAGTGGAGGAGAAGGAAGTAGAGGGGTTGGAGGAGGAGAGGGC
ACGTATGGAGGTAGGTCTCTCTCTGCTCTTGTCGTTCCAATTAAATCACA
CGGAAGGAAATGCCCTCTCTTGGACCTTCCCTTTCATTTGTCTTTCACCT
TAGCTGCCTATGTTATTTAATTTAAGATGTATAAATGCGGAGTAGTGATC
AATATCAAAGAAGAGGCAGCGTCCCCTCGCTCTGCCACGCCATGACCCAT
CCCTTCCTCCCTCCCTTCCTTCCTCCCTCCCTCCCTCCAGGCTC
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Coding sequence (CDS) from alignment at scaffold_87:49686..50729-

>mRNA_11194 ID=mRNA_11194|Name=jgi.p|Nanoce1779_2|634506|organism=Nannochloropsis oceanica|type=CDS|length=1836bp|location=Sequence derived from alignment at scaffold_87:49686..50729- (Nannochloropsis oceanica)
TGACTTGCCTGCCGTTGCCATTAAAGATTGGAGGAGGTGTGCGTGGCTTC
CCTAAGGCATTGCCACGAAAGGAGACGGCACCAGGACCTGCTCCAGGAGG
GAGGGAGAGAGGCATGGGTCCCACAAAAAGCATGGCACCACCAGCATCAT
ATATTACGTCTGACACGAGGAATGCGAATAAAAGCGAAGTAGGGGAGGGC
AAGGAGGAGGAGGAGGAAGTGGAGGAGAAGGAAGTAGAGGGGTTGGAGGA
GGAGAGGGCACGTATGGAGGTAGGTCTCTCTCTGCTCTTGTCGTTCCAAT
TAAATCACACGGAAGGAAATGCCCTCTCTTGGACCTTCCCTTTCATTTGT
CTTTCACCTTAGGAACTGAAGCAGCAGCAGCGGCCTCCAACCAGCCACTG
CAGCAGCAGCAGCCAGCAGCACCACTATTGTCAGAGCCCTCAGAGCCCTC
ATTGCCAGTTTTGATCGGCTCAGTGGTGGAAAAGACGGGGAAAGATGCAG
CACCTGGAGGAAGACGGCGAGTTAGCCCGGATGCTTGCCGAACAGGAAGC
GTTCCTAGCGTCCCAAGAAGCACCGGCCGCAAAAGTAGTGCGGCGGCAGG
AGGGCGACAATGTGACTTGCCTGCCGTTGCCATTAAAGATTGGAGGAGGT
GTGCGTGGCTTCCCTAAGGCATTGCCACGAAAGGAGACGGCACCAGGACC
TGCTCCAGGAGGGAGGGAGAGAGGCATGGGTCCCACAAAAAGCATGGCAC
CACCAGCATCATATATTACGTCTGACACGAGGAATGCGAATAAAAGCGAA
GTAGGGGAGGGCAAGGAGGAGGAGGAGGAAGTGGAGGAGAAGGAAGTAGA
GGGGTTGGAGGAGGAGAGGGCACGTATGGAGGTAGGTCTCTCTCTGCTCT
TGTCGTTCCAATTAAATCACACGGAAGGAAATGCCCTCTCTTGGACCTTC
CCTTTCATTTGTCTTTCACCTTAGGAACTGAAGCAGCAGCAGCGGCCTCC
AACCAGCCACTGCAGCAGCAGCAGCCAGCAGCACCACTATTGTCAGAGCC
CTCAGAGCCCTCATTGCCAGTTTTGATCGGCTCAGTGGTGGAAAAGACGG
GGAAAGATGCAGCACCTGGAGGAAGACGGCGAGTTAGCCCGGATGCTTGC
CGAACAGGAAGCGTTCCTAGCGTCCCAAGAAGCACCGGCCGCAAAAGTAG
TGCGGCGGCAGGAGGGCGACAATGTGACTTGCCTGCCGTTGCCATTAAAG
ATTGGAGGAGGTGTGCGTGGCTTCCCTAAGGCATTGCCACGAAAGGAGAC
GGCACCAGGACCTGCTCCAGGAGGGAGGGAGAGAGGCATGGGTCCCACAA
AAAGCATGGCACCACCAGCATCATATATTACGTCTGACACGAGGAATGCG
AATAAAAGCGAAGTAGGGGAGGGCAAGGAGGAGGAGGAGGAAGTGGAGGA
GAAGGAAGTAGAGGGGTTGGAGGAGGAGAGGGCACGTATGGAGGTAGGTC
TCTCTCTGCTCTTGTCGTTCCAATTAAATCACACGGAAGGAAATGCCCTC
TCTTGGACCTTCCCTTTCATTTGTCTTTCACCTTAGGAACTGAAGCAGCA
GCAGCGGCCTCCAACCAGCCACTGCAGCAGCAGCAGCCAGCAGCACCACT
ATTGTCAGAGCCCTCAGAGCCCTCATTGCCAGTTTTGATCGGCTCAGTGG
TGGAAAAGACGGGGAAAGATGCAGCACCTGGAGGAAGACGGCGAGTTAGC
CCGGATGCTTGCCGAACAGGAAGCGTTCCTAGCGTCCCAAGAAGCACCGG
CCGCAAAAGTAGTGCGGCGGCAGGAGGGCGACAATG
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Synonyms
Publications