jgi.p|Nanoce1779_2|573369, gene_1762 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573369
Unique Namegene_1762
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_1:1449705..1451182 -

Link to JBrowse

Properties
Property NameValue
TranscriptId573455
ProteinId573369
Product nameFormamidopyrimidine-DNA glycosylase H2TH domain-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1449705..1451182 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006289nucleotide-excision repair
GO:0006284base-excision repair
Vocabulary: Molecular Function
TermDefinition
GO:0003684damaged DNA binding
GO:0003906DNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0008270zinc ion binding
GO:0016799hydrolase activity, hydrolyzing N-glycosyl compounds
GO:0003676nucleic acid binding
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL000ncniL000Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05500NO03G05500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573369mRNA_1762-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573369mRNA_1762Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|573369

>mRNA_1762-protein ID=mRNA_1762-protein|Name=jgi.p|Nanoce1779_2|573369|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp
MPELPEVAALVAAIENEAKSKRLLRVLTKEAGGGPRDGLYDDLVFSGTEE
QEMHRVLEGRALTGVGRKGKHLWMELSLLPSPPSTSAAFGVGNGRRGGDE
GARNTSTLTTSSAPQEDKRFVLFHMGMTGSLLFQHVAIPQYRSFSLDVSK
GWPPKFCKAQFIFCNCEEGKDDEAIQLAFCDQRRWGRVQLLPAGVKDPRM
EAPLKELAPDAWKERPSLQVFRDKLKETDIAIKAALLDQGRVLSGLGNWV
CDEVLFQAKVDPARRCKALTEGDVRRVWESVDYVCATACAANARSEGFPI
GWLFHYRWVKTKKDMAGAKGPEGRRMVFETVGGRTTAIVPSVQRVRKGGD
EEKEKGEPGEDGAGVCRGKRKQKEEEDEFEQIMTKKKISKGKRCVKEELM
EEEVGIGRGDEKAESPSTISERATKVIKMEKDVKMNIPASDKTTAPRRSS
PRVKAGEVKTKGKRAKK*
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Synonyms
Publications