jgi.p|Nanoce1779_2|573369, mRNA_1762 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573369
Unique NamemRNA_1762
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1478
Alignment locationscaffold_1:1449705..1451182 -

Link to JBrowse

Properties
Property NameValue
TranscriptId573455
TrackFilteredModels2
ProteinId573369
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1449705..1451182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573369gene_1762Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573369mRNA_1762-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1762CDS_1762Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1762 ID=mRNA_1762|Name=jgi.p|Nanoce1779_2|573369|organism=Nannochloropsis oceanica|type=mRNA|length=1478bp
CAGGCAGACGCACCAAGACGTATGCCGGAGCTCCCCGAAGTTGCTGCCCT
GGTCGCCGCCATCGAAAATGAAGCCAAAAGTAAGCGGTTGCTTCGAGTGT
TGACCAAGGAAGCGGGCGGGGGACCCCGGGATGGTTTGTACGACGACTTG
GTATTCAGTGGCACCGAGGAGCAGGAAATGCACCGCGTGCTGGAAGGACG
TGCCTTGACAGGCGTGGGTCGGAAGGGGAAGCATCTATGGATGGAGCTAT
CGTTGCTTCCCTCCCCCCCTTCAACCTCCGCTGCATTCGGTGTTGGGAAT
GGGAGAAGAGGAGGAGATGAAGGCGCCCGCAACACTTCTACCCTAACAAC
CTCTTCTGCTCCTCAAGAAGACAAGCGCTTCGTCCTCTTCCACATGGGAA
TGACAGGCTCCCTCCTATTCCAGCACGTGGCCATCCCACAATACAGATCA
TTTTCCCTCGACGTCTCGAAAGGCTGGCCACCCAAGTTCTGCAAGGCCCA
ATTTATCTTCTGTAATTGTGAGGAAGGGAAGGATGACGAGGCAATTCAAC
TAGCGTTTTGCGACCAACGACGGTGGGGCCGCGTACAGCTTCTACCAGCT
GGAGTGAAGGACCCTCGGATGGAGGCCCCGCTCAAAGAATTAGCGCCGGA
TGCCTGGAAGGAACGACCTTCATTGCAAGTGTTCAGGGATAAGTTAAAAG
AGACCGACATTGCCATTAAGGCGGCCTTATTGGATCAGGGGAGGGTTTTG
TCGGGATTGGGCAATTGGGTGTGCGATGAGGTGCTGTTCCAGGCCAAGGT
GGACCCGGCGCGAAGGTGCAAGGCGCTGACGGAGGGGGACGTGAGGAGGG
TGTGGGAGTCGGTGGACTACGTGTGTGCGACGGCGTGTGCGGCTAATGCG
CGGAGCGAAGGATTTCCTATTGGTTGGTTATTCCATTATCGGTGGGTCAA
GACCAAGAAGGACATGGCGGGAGCTAAGGGTCCGGAGGGGAGAAGAATGG
TGTTTGAGACAGTTGGAGGGAGGACAACGGCGATTGTGCCTTCGGTGCAG
CGGGTGAGAAAGGGGGGGGATGAGGAGAAGGAGAAGGGAGAGCCAGGAGA
GGATGGGGCTGGGGTATGTAGAGGAAAAAGAAAACAAAAGGAGGAGGAAG
ATGAATTTGAACAGATCATGACGAAGAAGAAGATAAGCAAGGGAAAGAGG
TGTGTGAAGGAAGAGCTGATGGAAGAGGAGGTTGGTATTGGGCGAGGAGA
CGAGAAGGCAGAATCGCCCTCGACCATATCCGAACGGGCCACCAAGGTGA
TTAAGATGGAGAAAGATGTGAAAATGAATATACCAGCATCCGATAAGACG
ACGGCACCGCGACGCAGCAGTCCACGTGTGAAGGCGGGCGAAGTCAAGAC
GAAAGGAAAGAGAGCAAAAAAATGAAAGTTAAGTTCAAACAAAGACAAAA
ACAAGAAAGACAAACCAAAAAATTCAAG
back to top

protein sequence of jgi.p|Nanoce1779_2|573369

>mRNA_1762-protein ID=mRNA_1762-protein|Name=jgi.p|Nanoce1779_2|573369|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp
MPELPEVAALVAAIENEAKSKRLLRVLTKEAGGGPRDGLYDDLVFSGTEE
QEMHRVLEGRALTGVGRKGKHLWMELSLLPSPPSTSAAFGVGNGRRGGDE
GARNTSTLTTSSAPQEDKRFVLFHMGMTGSLLFQHVAIPQYRSFSLDVSK
GWPPKFCKAQFIFCNCEEGKDDEAIQLAFCDQRRWGRVQLLPAGVKDPRM
EAPLKELAPDAWKERPSLQVFRDKLKETDIAIKAALLDQGRVLSGLGNWV
CDEVLFQAKVDPARRCKALTEGDVRRVWESVDYVCATACAANARSEGFPI
GWLFHYRWVKTKKDMAGAKGPEGRRMVFETVGGRTTAIVPSVQRVRKGGD
EEKEKGEPGEDGAGVCRGKRKQKEEEDEFEQIMTKKKISKGKRCVKEELM
EEEVGIGRGDEKAESPSTISERATKVIKMEKDVKMNIPASDKTTAPRRSS
PRVKAGEVKTKGKRAKK*
back to top

mRNA from alignment at scaffold_1:1449705..1451182-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1762 ID=mRNA_1762|Name=jgi.p|Nanoce1779_2|573369|organism=Nannochloropsis oceanica|type=mRNA|length=1478bp|location=Sequence derived from alignment at scaffold_1:1449705..1451182- (Nannochloropsis oceanica)
CAGGCAGACGCACCAAGACGTATGCCGGAGCTCCCCGAAGTTGCTGCCCT
GGTCGCCGCCATCGAAAATGAAGCCAAAAGTAAGCGGTTGCTTCGAGTGT
TGACCAAGGAAGCGGGCGGGGGACCCCGGGATGGTTTGTACGACGACTTG
GTATTCAGTGGCACCGAGGAGCAGGAAATGCACCGCGTGCTGGAAGGACG
TGCCTTGACAGGCGTGGGTCGGAAGGGGAAGCATCTATGGATGGAGCTAT
CGTTGCTTCCCTCCCCCCCTTCAACCTCCGCTGCATTCGGTGTTGGGAAT
GGGAGAAGAGGAGGAGATGAAGGCGCCCGCAACACTTCTACCCTAACAAC
CTCTTCTGCTCCTCAAGAAGACAAGCGCTTCGTCCTCTTCCACATGGGAA
TGACAGGCTCCCTCCTATTCCAGCACGTGGCCATCCCACAATACAGATCA
TTTTCCCTCGACGTCTCGAAAGGCTGGCCACCCAAGTTCTGCAAGGCCCA
ATTTATCTTCTGTAATTGTGAGGAAGGGAAGGATGACGAGGCAATTCAAC
TAGCGTTTTGCGACCAACGACGGTGGGGCCGCGTACAGCTTCTACCAGCT
GGAGTGAAGGACCCTCGGATGGAGGCCCCGCTCAAAGAATTAGCGCCGGA
TGCCTGGAAGGAACGACCTTCATTGCAAGTGTTCAGGGATAAGTTAAAAG
AGACCGACATTGCCATTAAGGCGGCCTTATTGGATCAGGGGAGGGTTTTG
TCGGGATTGGGCAATTGGGTGTGCGATGAGGTGCTGTTCCAGGCCAAGGT
GGACCCGGCGCGAAGGTGCAAGGCGCTGACGGAGGGGGACGTGAGGAGGG
TGTGGGAGTCGGTGGACTACGTGTGTGCGACGGCGTGTGCGGCTAATGCG
CGGAGCGAAGGATTTCCTATTGGTTGGTTATTCCATTATCGGTGGGTCAA
GACCAAGAAGGACATGGCGGGAGCTAAGGGTCCGGAGGGGAGAAGAATGG
TGTTTGAGACAGTTGGAGGGAGGACAACGGCGATTGTGCCTTCGGTGCAG
CGGGTGAGAAAGGGGGGGGATGAGGAGAAGGAGAAGGGAGAGCCAGGAGA
GGATGGGGCTGGGGTATGTAGAGGAAAAAGAAAACAAAAGGAGGAGGAAG
ATGAATTTGAACAGATCATGACGAAGAAGAAGATAAGCAAGGGAAAGAGG
TGTGTGAAGGAAGAGCTGATGGAAGAGGAGGTTGGTATTGGGCGAGGAGA
CGAGAAGGCAGAATCGCCCTCGACCATATCCGAACGGGCCACCAAGGTGA
TTAAGATGGAGAAAGATGTGAAAATGAATATACCAGCATCCGATAAGACG
ACGGCACCGCGACGCAGCAGTCCACGTGTGAAGGCGGGCGAAGTCAAGAC
GAAAGGAAAGAGAGCAAAAAAATGAAAGTTAAGTTCAAACAAAGACAAAA
ACAAGAAAGACAAACCAAAAAATTCAAG
back to top

Coding sequence (CDS) from alignment at scaffold_1:1449705..1451182-

>mRNA_1762 ID=mRNA_1762|Name=jgi.p|Nanoce1779_2|573369|organism=Nannochloropsis oceanica|type=CDS|length=1404bp|location=Sequence derived from alignment at scaffold_1:1449705..1451182- (Nannochloropsis oceanica)
ATGCCGGAGCTCCCCGAAGTTGCTGCCCTGGTCGCCGCCATCGAAAATGA
AGCCAAAAGTAAGCGGTTGCTTCGAGTGTTGACCAAGGAAGCGGGCGGGG
GACCCCGGGATGGTTTGTACGACGACTTGGTATTCAGTGGCACCGAGGAG
CAGGAAATGCACCGCGTGCTGGAAGGACGTGCCTTGACAGGCGTGGGTCG
GAAGGGGAAGCATCTATGGATGGAGCTATCGTTGCTTCCCTCCCCCCCTT
CAACCTCCGCTGCATTCGGTGTTGGGAATGGGAGAAGAGGAGGAGATGAA
GGCGCCCGCAACACTTCTACCCTAACAACCTCTTCTGCTCCTCAAGAAGA
CAAGCGCTTCGTCCTCTTCCACATGGGAATGACAGGCTCCCTCCTATTCC
AGCACGTGGCCATCCCACAATACAGATCATTTTCCCTCGACGTCTCGAAA
GGCTGGCCACCCAAGTTCTGCAAGGCCCAATTTATCTTCTGTAATTGTGA
GGAAGGGAAGGATGACGAGGCAATTCAACTAGCGTTTTGCGACCAACGAC
GGTGGGGCCGCGTACAGCTTCTACCAGCTGGAGTGAAGGACCCTCGGATG
GAGGCCCCGCTCAAAGAATTAGCGCCGGATGCCTGGAAGGAACGACCTTC
ATTGCAAGTGTTCAGGGATAAGTTAAAAGAGACCGACATTGCCATTAAGG
CGGCCTTATTGGATCAGGGGAGGGTTTTGTCGGGATTGGGCAATTGGGTG
TGCGATGAGGTGCTGTTCCAGGCCAAGGTGGACCCGGCGCGAAGGTGCAA
GGCGCTGACGGAGGGGGACGTGAGGAGGGTGTGGGAGTCGGTGGACTACG
TGTGTGCGACGGCGTGTGCGGCTAATGCGCGGAGCGAAGGATTTCCTATT
GGTTGGTTATTCCATTATCGGTGGGTCAAGACCAAGAAGGACATGGCGGG
AGCTAAGGGTCCGGAGGGGAGAAGAATGGTGTTTGAGACAGTTGGAGGGA
GGACAACGGCGATTGTGCCTTCGGTGCAGCGGGTGAGAAAGGGGGGGGAT
GAGGAGAAGGAGAAGGGAGAGCCAGGAGAGGATGGGGCTGGGGTATGTAG
AGGAAAAAGAAAACAAAAGGAGGAGGAAGATGAATTTGAACAGATCATGA
CGAAGAAGAAGATAAGCAAGGGAAAGAGGTGTGTGAAGGAAGAGCTGATG
GAAGAGGAGGTTGGTATTGGGCGAGGAGACGAGAAGGCAGAATCGCCCTC
GACCATATCCGAACGGGCCACCAAGGTGATTAAGATGGAGAAAGATGTGA
AAATGAATATACCAGCATCCGATAAGACGACGGCACCGCGACGCAGCAGT
CCACGTGTGAAGGCGGGCGAAGTCAAGACGAAAGGAAAGAGAGCAAAAAA
ATGA
back to top
Synonyms
Publications