jgi.p|Nanoce1779_2|652348, mRNA_7414 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|652348
Unique Name	mRNA_7414
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1473
Alignment location	scaffold_19:457843..459315 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	652434
Track	FilteredModels2
ProteinId	652348

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:457843..459315 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|652348	gene_7414	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|652348	mRNA_7414-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7414	CDS_7414	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:457843..459315+
coding sequence from alignment at scaffold_19:457843..459315+

mRNA sequence

>mRNA_7414 ID=mRNA_7414|Name=jgi.p|Nanoce1779_2|652348|organism=Nannochloropsis oceanica|type=mRNA|length=1473bp
CTGCAAGTCGCTTGGTGACTTTTTGGACAGTGTCGTCTAGGGTGAAATTA
TAGAACTTGTCGTGACTGATCCCATTGGGAGAAGCGACGACAACCTCCCC
ACCTGCAAAGCGAAGCTATTTAATTAAAATGCAGTGTCGGCCAGCTCAGG
GGTGCAGTATTACTGAATCTATACATGGTAGTTAGGACAAAGGCAGAAGC
ATGCTGCCGCACGCTATCACAGCACGTCTCAGTGTCCCGGCCAAACGATT
CAGCGATGCAGCGTCACGGCGGTCACACGCTTTTTCCCCACTACCTTACG
ATCACCACAAATTGTTACAGGCAGCACCATGCTTCTTCTCCGTAGCGGCA
CCAGGAGCAGCAGCAGCGCCCGGACTGTAAATTCTCGATTCTTCCGGCTT
CCTGCAGCCCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACGAAACAT
AGTACTGATGCAACGGAAGCCCTGTACGAGTACCCACAAGAACAGCAGCG
CCACCTGCTTCCTTTCCTCCCTCCCTTGTACCTATTCCTCTACTCTACGC
GGTATCTCCTTTTCCTCCTCCTCCTCCTTCCCCTCCTCCTCTTCCTCCCC
CTCCTCCGTAACCTTTTCCACATCATCCTTCTCCGATATGGGCAATAATG
CCTTCCCTACCAATCAGAGGAGTGACCCTGACTTCGTCGTCTTTGGCGAG
AACTGCATGCTCAAGTTTCGCCTGACCACCTACCAACAACCCGGGGGGGG
GGTGGGCGGTGGTGGTGGTGGCGCTCCACCTGGAGGAGGAGGCGGAGGAG
GAGGCACTCTTAACTACAAGAACAATGCGCGGTTGCTCGTAGAATTTACG
AAGAAGGGCCCAAGTGGTGCGTATGAATGGAAGGGGACAAAAAGGCTCTC
CCTGACGGCAGAGGAGATCGGGCTTATGCTTGACAGTGGCCCGACAGAAG
AGCTCATATTCCGTCGTTCAGGGGGCGGAGGAGGAGGGGGAGGGGGAGGG
ATGCCGATGCCACCGAGGGAGATAAAGATCATCCCCACATCGACGGGGGA
TTGGATCTTCCATTTCTCGATGGAGGCGGAGGAGATGTTCGAGGTGACTG
TGACGAGGGGAAGGAAGGCGATTTTGAAACGATTAATACAGATGAGCCTG
CCTGCTATTTTTGGTTGGGGAGGAGGAGGAGGAGGAGGGGGAGCGGGAGG
AGGAACAGCAGCAGCGCCTCTAGGAGGAGGATTAGGAGGAGGAGGAGGGA
TGGGTAGGGGGGGAGGGATAGGGGTTGCAGGGATAGGAGGTGGAGGGATG
GGAGGAGGGGGTGAGAGGGGAGGAGGAATGACGCCTTTTTAGAGTGGAGG
GGAGGGAGGAAAGGAATATCTATACGAGTATGTGTCATTTATAATATATA
TTTGTATAAAATTAGGGTCGGAAAGATGAAGGCGTATGGGTGGGCGAACG
AGCCGAGGAGAGGGAGTCGAGAG

protein sequence of jgi.p|Nanoce1779_2|652348

>mRNA_7414-protein ID=mRNA_7414-protein|Name=jgi.p|Nanoce1779_2|652348|organism=Nannochloropsis oceanica|type=polypeptide|length=338bp
MLLLRSGTRSSSSARTVNSRFFRLPAAQQQQQQQQQQQRNIVLMQRKPCT
STHKNSSATCFLSSLPCTYSSTLRGISFSSSSSFPSSSSSPSSVTFSTSS
FSDMGNNAFPTNQRSDPDFVVFGENCMLKFRLTTYQQPGGGVGGGGGGAP
PGGGGGGGGTLNYKNNARLLVEFTKKGPSGAYEWKGTKRLSLTAEEIGLM
LDSGPTEELIFRRSGGGGGGGGGGMPMPPREIKIIPTSTGDWIFHFSMEA
EEMFEVTVTRGRKAILKRLIQMSLPAIFGWGGGGGGGGAGGGTAAAPLGG
GLGGGGGMGRGGGIGVAGIGGGGMGGGGERGGGMTPF*

mRNA from alignment at scaffold_19:457843..459315+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7414 ID=mRNA_7414|Name=jgi.p|Nanoce1779_2|652348|organism=Nannochloropsis oceanica|type=mRNA|length=1473bp|location=Sequence derived from alignment at scaffold_19:457843..459315+ (Nannochloropsis oceanica)
CTGCAAGTCGCTTGGTGACTTTTTGGACAGTGTCGTCTAGGGTGAAATTA
TAGAACTTGTCGTGACTGATCCCATTGGGAGAAGCGACGACAACCTCCCC
ACCTGCAAAGCGAAGCTATTTAATTAAAATGCAGTGTCGGCCAGCTCAGG
GGTGCAGTATTACTGAATCTATACATGGTAGTTAGGACAAAGGCAGAAGC
ATGCTGCCGCACGCTATCACAGCACGTCTCAGTGTCCCGGCCAAACGATT
CAGCGATGCAGCGTCACGGCGGTCACACGCTTTTTCCCCACTACCTTACG
ATCACCACAAATTGTTACAGGCAGCACCATGCTTCTTCTCCGTAGCGGCA
CCAGGAGCAGCAGCAGCGCCCGGACTGTAAATTCTCGATTCTTCCGGCTT
CCTGCAGCCCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACGAAACAT
AGTACTGATGCAACGGAAGCCCTGTACGAGTACCCACAAGAACAGCAGCG
CCACCTGCTTCCTTTCCTCCCTCCCTTGTACCTATTCCTCTACTCTACGC
GGTATCTCCTTTTCCTCCTCCTCCTCCTTCCCCTCCTCCTCTTCCTCCCC
CTCCTCCGTAACCTTTTCCACATCATCCTTCTCCGATATGGGCAATAATG
CCTTCCCTACCAATCAGAGGAGTGACCCTGACTTCGTCGTCTTTGGCGAG
AACTGCATGCTCAAGTTTCGCCTGACCACCTACCAACAACCCGGGGGGGG
GGTGGGCGGTGGTGGTGGTGGCGCTCCACCTGGAGGAGGAGGCGGAGGAG
GAGGCACTCTTAACTACAAGAACAATGCGCGGTTGCTCGTAGAATTTACG
AAGAAGGGCCCAAGTGGTGCGTATGAATGGAAGGGGACAAAAAGGCTCTC
CCTGACGGCAGAGGAGATCGGGCTTATGCTTGACAGTGGCCCGACAGAAG
AGCTCATATTCCGTCGTTCAGGGGGCGGAGGAGGAGGGGGAGGGGGAGGG
ATGCCGATGCCACCGAGGGAGATAAAGATCATCCCCACATCGACGGGGGA
TTGGATCTTCCATTTCTCGATGGAGGCGGAGGAGATGTTCGAGGTGACTG
TGACGAGGGGAAGGAAGGCGATTTTGAAACGATTAATACAGATGAGCCTG
CCTGCTATTTTTGGTTGGGGAGGAGGAGGAGGAGGAGGGGGAGCGGGAGG
AGGAACAGCAGCAGCGCCTCTAGGAGGAGGATTAGGAGGAGGAGGAGGGA
TGGGTAGGGGGGGAGGGATAGGGGTTGCAGGGATAGGAGGTGGAGGGATG
GGAGGAGGGGGTGAGAGGGGAGGAGGAATGACGCCTTTTTAGAGTGGAGG
GGAGGGAGGAAAGGAATATCTATACGAGTATGTGTCATTTATAATATATA
TTTGTATAAAATTAGGGTCGGAAAGATGAAGGCGTATGGGTGGGCGAACG
AGCCGAGGAGAGGGAGTCGAGAG

Coding sequence (CDS) from alignment at scaffold_19:457843..459315+

>mRNA_7414 ID=mRNA_7414|Name=jgi.p|Nanoce1779_2|652348|organism=Nannochloropsis oceanica|type=CDS|length=1014bp|location=Sequence derived from alignment at scaffold_19:457843..459315+ (Nannochloropsis oceanica)
ATGCTTCTTCTCCGTAGCGGCACCAGGAGCAGCAGCAGCGCCCGGACTGT
AAATTCTCGATTCTTCCGGCTTCCTGCAGCCCAGCAGCAGCAGCAGCAGC
AGCAGCAACAGCAACGAAACATAGTACTGATGCAACGGAAGCCCTGTACG
AGTACCCACAAGAACAGCAGCGCCACCTGCTTCCTTTCCTCCCTCCCTTG
TACCTATTCCTCTACTCTACGCGGTATCTCCTTTTCCTCCTCCTCCTCCT
TCCCCTCCTCCTCTTCCTCCCCCTCCTCCGTAACCTTTTCCACATCATCC
TTCTCCGATATGGGCAATAATGCCTTCCCTACCAATCAGAGGAGTGACCC
TGACTTCGTCGTCTTTGGCGAGAACTGCATGCTCAAGTTTCGCCTGACCA
CCTACCAACAACCCGGGGGGGGGGTGGGCGGTGGTGGTGGTGGCGCTCCA
CCTGGAGGAGGAGGCGGAGGAGGAGGCACTCTTAACTACAAGAACAATGC
GCGGTTGCTCGTAGAATTTACGAAGAAGGGCCCAAGTGGTGCGTATGAAT
GGAAGGGGACAAAAAGGCTCTCCCTGACGGCAGAGGAGATCGGGCTTATG
CTTGACAGTGGCCCGACAGAAGAGCTCATATTCCGTCGTTCAGGGGGCGG
AGGAGGAGGGGGAGGGGGAGGGATGCCGATGCCACCGAGGGAGATAAAGA
TCATCCCCACATCGACGGGGGATTGGATCTTCCATTTCTCGATGGAGGCG
GAGGAGATGTTCGAGGTGACTGTGACGAGGGGAAGGAAGGCGATTTTGAA
ACGATTAATACAGATGAGCCTGCCTGCTATTTTTGGTTGGGGAGGAGGAG
GAGGAGGAGGGGGAGCGGGAGGAGGAACAGCAGCAGCGCCTCTAGGAGGA
GGATTAGGAGGAGGAGGAGGGATGGGTAGGGGGGGAGGGATAGGGGTTGC
AGGGATAGGAGGTGGAGGGATGGGAGGAGGGGGTGAGAGGGGAGGAGGAA
TGACGCCTTTTTAG

Synonyms

Publications