jgi.p|Nanoce1779_2|576892, gene_309 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576892
Unique Name	gene_309
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Alignment location	scaffold_3:758652..768479 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576978
ProteinId	576892
Product name	expressed protein
Portal id	Nanoce1779_2

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:758652..768479 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE164714	2022-03-15
GO annotation for N. oceanica CCMP1779 v2	2020-03-30
PRJNA285666	2019-07-03
PRJNA157867	2019-07-02
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding
GO:0004842	ubiquitin-protein transferase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0000151	ubiquitin ligase complex

Vocabulary: **Biological Process**
Term	Definition
GO:0016567	protein ubiquitination

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniL047	ncniL047	Nannochloropsis oceanica (N. oceanica CCMP1779)	syntenic_region

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576892	mRNA_309-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576892	mRNA_309	Nannochloropsis oceanica (N. oceanica CCMP1779)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of jgi.p|Nanoce1779_2|576892

>mRNA_309-protein ID=mRNA_309-protein|Name=jgi.p|Nanoce1779_2|576892|organism=Nannochloropsis oceanica|type=polypeptide|length=3067bp
MESDDREVTEPDDNVPVSPSPLPPTSSPQPSVRSTTLPSLTAGLTHLTIQ
IFPENITSSEGMHGSSLTPGEVGAASPFSPIITPVGTPRELIPPAGPLPY
DGNADLEKAIRMAMKNRDTAAWKLLIKARTVRNNLPTSGENACISVADAA
RGGEELRPALTKLGWTENEVKWAQAKADGDLVEGIKLLLKEETSTHHHSN
SDGGGEDDQEENKDDDEQHNQQHEQLNGSGSSHQQQHRRRGKPVSEGAEV
AVTSSILRRLSIDSTWQLLQSTSRTTGDEAARRKAWMKSALLLVQVSSLQ
RQGRLSLLVKKKMKIAVAHGLQKEVEALLKVVHQRQARHRRDSVDREDSL
FTSYKCPLTDDLLYEPVTLVCGHTFSKRALEGVLSSGNRACPICRKPISV
ADADELKVNILMRDTITRLFSDRILQLVKHDIACLNPENIELAAEEIFFI
IERYKSNEDVVDLALRTLLIWTREKRNLAPLSRRGLGREVLALLRMPALR
ASPKFLRRTAVAGLQVLQALGSGSTHGARILSEGAVWATALSLLLEKPKI
KGPELAALAAEAFNLVALAINANQENAAMRLDPCLLAHQILAFALAHQQE
ASNEMIVAALRLVNDLMSLARIKGTQHYVLGHGDARQVLNLWFAWGRVGE
ATTEGSAATAAIETGVGAKGELLLDQACSATVVPVPEVVREVASLFSTAL
FLQKHGIDAEEDLASVLIQAGTVQRGLEALVVFSENTELLLAVVPLLLRL
GFSPGLEANIIREEVCHQLKAPKFLTDVTRYLERLEEKAQHADSPEIPMV
FEKASSHRIDIQENGVKVMANGKGWVVGSAIGAGTSIVTYEILQEDKGDE
CSCLGISLVEDPSITAEYRSTGSPFITLRCFSGEIYRDSRVLHASEALKV
HPGGVVRIFIDMEAGTMSFQVNDGPPVLVASDLKGRTIYPAAYFYLGEPQ
PDRSTHPIIRMSITGSQVAKTLAIAVDAALAFAFPAPLRALVDIAGRRSR
SSSACASPLYQEGQIIRRRCTAVTTISDKTAVHEDPLFSAYCYGVGPGVT
SGIHTYVFKASSILSICFGMVASDAVEPVLRLGPGPPEGIRTSLIVTLWS
SGRVSSGGLLEGLRPVPYDAQDFFKAEEPVTIRVRLEGKENVLEVVRGAR
VIHVVEQLDRRLPGGQALHPFVGLLSANDSVSVEYRVSSPVHALGSEGIP
DRKAWTLKAQAALEELGQARCDSRTLLLQSPTRLSLPATFQYLEEATGPY
KPISLLEELKGRVCAGGLKADVLSDIAWNICRSVSRGMNWESNVREKALQ
LLASLPQGLEGKALVVGNNAGVRRGDISENLGSTSKGSSNIGSGGFLVPA
GALGLVVASSQDGCLTPGGLDLLTSLLGPPPCSPVFQAYARELGIVPLLL
TTMEGGSSRPRDVGSGADPMKGNSDDNRSLDLLLLLLQGPAAPLEAIRSE
VLSLGLLRTLLEHLTVRYINIPLEAQAFRRNHLQLIVELVAGKDWNQESL
FSELLQMDAPVTAANPFLIRPHTLDEPASTAAMMTGAVATAPGTVLSPNV
STGPFTTSSGGGADILLQRHKATKLQEGWRGHVSQSGEASTSWQDAAFWA
LKDGDLDMLRVLLAAPYSIPFIADRVIFAPAWPGPWRGVLSEPVTMLGAL
MVLARPNQVEEMKAFLETRAQAYRRQKRENVDDKPSISVSQPSMSFLRHP
NADGTLGTFAVDVQATEQFGFHHNDLVYAAAAPQWGHARVLGVQSKRLWL
QFQGCLGAVTCPSSGWAPLDLRLLRARREAEGSGTSTTFRLPLERGTRVV
RGPHWEWGIQDAFAGNLGTVLGNGGGDGWYRVMWDTSHTSNSYQYTPEHQ
DISRYNDPLGTSLSSLFPSLPACGSDYVDGRELGEEGENVEVCESSVNVV
TYAGEALANAGMDSLLALLHKLWPKAGNQWDDEEHVHQRHLLWICVSRLG
LRNPARMAKIVEHPSAQPLVNAAIYQLQHPDGEQAMGHLFFLAVAARHGS
NVILSAIEGALPYLLQLMAAPTSSTRAVVLSLSVINSLMYHHRQGASVHR
MVECNFENDHSALYAIMCACLQRVLLPTRENPHAAAHILAIRFLQSLFET
DPVVLHTSKNEEEQLEQLQDEFVTLLETYATFAFPKTMIEELLLLLLAWM
RATAMTDGGEIDPEKLRLAKERGAKVTFLARALLDEFEAANETLLQAPRQ
VLLSAPSILRRALTARKDISMRKRSVNLFLRAGTLGVLFQGDYEWTGAEA
GHVLALCTFLQTLLEAAPGRKEDIITLPLMRDLMPVLLDTNTDLAVTKAI
LQTYVSRLPEEESITEPVVVATTADGRRGNWRGNSESGISSSRSGACTST
SNSSKECTFWTSLGFGLAHALCVTYKRVMAEQTTASLALTLLASVVQETR
SLEQKDLEILLYPSPRSLPTVPASEVGAELGERYDDGAVAQIAAKLKIIG
MACHSFETDAHVDTNALVVRVVQWLQAYVTEQPVVEAALHLLQLLVDSTH
VLLPEQIIQSSGSLCTKSLFVAPPSSRHAPHHISSYPFSAPTLSSPTRLQ
RGVSASLGRQRMRRWHSSSEAVEELDLRMDEENDGMDGDEEAGARTAEEG
SEQEPEEEGADEWLTDRTSMQGMNGASMYLSRMTTMQDVAGGRVDNGSEL
SSSPFLEEVVRAEALPTTSVAGANEEKDEGLNGAVPDQGGVEVAFPMSVS
SEMDLAAAKPGWEPTGIRLPHWIQFHLPKEKRVGFGPATSVAQGAPPALM
LGEAKALLQHWRALQLEQRDYQNNTPKVLEISVGRLSSGASLPLPASSLR
IVRVIEQVNHRQTGWLSLVNDVELQEGEDVVQVLFSANFGADEVSTKTGR
FRVLARTRISVEQIQAQLHMTELLPELVAMAMAHAEDRSFLRTVTFFFRR
FYPADTASLPALANSEYDLARGQAAGITFSEDGKWATFPFGPKLLVSTLN
SSEGILRWVFRSSGNSSWAVGAIPASKIDRHDVMMTEQSLAVATTGLAGG
RMALRKEIQKRNVEVVIDVQAGHLMLTVENHSDSPILLPMPPDSQEPYHL
AAMGYSNTVIQFLDKL*

Synonyms

Publications