jgi.p|Nanoce1779_2|411143, mRNA_10944 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|411143
Unique NamemRNA_10944
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1191
Alignment locationscaffold_77:2335..4187 -

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Properties
Property NameValue
TranscriptId411229
TrackFilteredModels2
ProteinId411143
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_77supercontigscaffold_77:2335..4187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|411143gene_10944Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|411143mRNA_10944-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10944CDS_10944Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10944 ID=mRNA_10944|Name=jgi.p|Nanoce1779_2|411143|organism=Nannochloropsis oceanica|type=mRNA|length=1191bp
CCTTCGCGGCGGTTCTCTGGCCCTCCGTCCCTTTCACAGTCCCCGAGGAT
CGGGTCGGGGTGGCGTACGGCCTCACCACCGCCATTCAAAATGGAGGCCT
GGCCCTCTTTCCTCTCTTGGCGGCGGCTATCTACAAGAGAGCTACTACGA
TCGTTGGTATGAGGTAGTGATGCACCTATCCTCTTCTCCCCTCCTCTTTC
GGCTGCGTCGTCGTCGTATCCCCCTGCCCTCGACCTGGTACGACTGGTGG
GAGAGAAGGAGAATCGCGCACAGGCTGACCAAGGAAACGCTATGGAGAAA
CCTGGTGGTGGCGCCACTGACGGAGGAAGTCGTATTCCGTGCCTGCATGC
TCCCTCTCCTTTACCAAGCTTCCTCCTCCCCTTCCTCCCTGGATTCCCCC
CGAGCTATCCCTTTCGTGAAACTGATCTTCTTGTCACCCCTTTTTTTTGG
TCTGGCGCACGCCCACCACGCCCTGCAGCGGGTGCGAGAAGGATTGCCGC
CCGCACAGGCCCTCCTCGAAGTAGCGTTGCAAGTTGCCTACACCAGCATC
TTCGGCTGGTATGCAGCGTTCCTTTTCCTCCGCACCGGCTCTCTCCTGCC
CTGCATCCTAACCCACTCCTTCTGCAACTTTGTGGGCCTCCCAAACCTGG
CCTTTATGCTTTCACCCTCCTCTCTTACGCCCTATCCTGCCTTCGCCTTC
CTCCTGTACGTGCATCGATGGAAGTTTCTCGCTGCTCACCTTCTAGGGAT
CGCCCTTTTTGTCGCACTTTTGTTCCCATTCTCGGATCCGAAGCTGTTCA
CCGAGAGAAGATTAGAGGGGGAAAGAGGTGTGCCATTATACTGGCAATTA
GAACGGCAAAAAAGGCATGCGAGGGCGAGGGGGTTGTGGATAAATTCGTC
CTTGAAAGGGAGCTCTGGAGGAATTAATCAAAGTAAAGAAATGAAATGAA
AATGTCTCTTTAAGTAGGCTTCGGCATATTTAGCGCTAAATATCCCATTT
GGCAATTGATGCTCGCTATTTTGCTTTTGATGACAGTGAATTGTGGGCGT
TAATCATTTATGATACTGGCCATGTATTCGACGCGCCCGCGCCGCATCAT
CATATTTGGGAGAAATGAGACGGATCTCGAAGGAAGTAAGTGCCCACCCA
ACAATTCACAGGCGAGGCCCAAGAATGTCTTTTACGTGATT
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protein sequence of jgi.p|Nanoce1779_2|411143

>mRNA_10944-protein ID=mRNA_10944-protein|Name=jgi.p|Nanoce1779_2|411143|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MHLSSSPLLFRLRRRRIPLPSTWYDWWERRRIAHRLTKETLWRNLVVAPL
TEEVVFRACMLPLLYQASSSPSSLDSPRAIPFVKLIFLSPLFFGLAHAHH
ALQRVREGLPPAQALLEVALQVAYTSIFGWYAAFLFLRTGSLLPCILTHS
FCNFVGLPNLAFMLSPSSLTPYPAFAFLLYVHRWKFLAAHLLGIALFVAL
LFPFSDPKLFTERRLEGERGVPLYWQLERQKRHARARGLWINSSLKGSSG
GINQSKEMK*
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mRNA from alignment at scaffold_77:2335..4187-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10944 ID=mRNA_10944|Name=jgi.p|Nanoce1779_2|411143|organism=Nannochloropsis oceanica|type=mRNA|length=1853bp|location=Sequence derived from alignment at scaffold_77:2335..4187- (Nannochloropsis oceanica)
CCTTCGCGGCGGTTCTCTGGCCCTCCGTCCCTTTCACAGTCCCCGAGGAT
CGGGTCGGGGTGGCGTACGGCCTCACCACCGCCATTCAAAATGGAGGCCT
GGCCCTCTTTCCTCTCTTGGCGGCGGCTATCTACAAGGTAGGAGGAATGG
GGAAGGAGTAAGGGTGGGAATGCCGACGGGGATTAGGGATAAACGCACTG
CTGTAATTTGCTAAATTTGCTTTCTCCCACTCTTTTCCCGCTTTTTAACT
TCCAATCCTCCCTCCCTTTTTCGCTCAGGCCGCCGATTCTCGCTACCTTC
CTCATGTGGAGCTTTTGTTTGTGTGCTTGGCTATAGTGGGCGTCTTCTCC
CTGTCCTGTCCTTTCCCCTTCCTCCTCTCATCCCTATCTGCTTACCTCCC
TCCTGTTCTTCTCTTAGAGAGCTACTACGATCGTTGGTATGAGGTAGTGA
TGCACCTATCCTCTTCTCCCCTCCTCTTTCGGCTGCGTCGTCGTCGTATC
CCCCTGCCCTCGACCTGGTACGACTGGTGGGAGAGAAGGAGAATCGCGCA
CAGGCTGACCAAGGAAACGCTATGGAGAAACCTGGTGGTGGCGCCACTGA
CGGAGGTAGGGCATGGGAGGGTCAACACAAAGGGACAGAAATTTGAGAAC
TTCATTCCATCCATCGCCCGGCCTCGACTTGAACCTATCTGCCTTCTTTT
TTCAAGGTCCCTTCTTCCCTCCCTCCTTCCGCTTACAGGAAGTCGTATTC
CGTGCCTGCATGCTCCCTCTCCTTTACCAAGCTTCCTCCTCCCCTTCCTC
CCTGGATTCCCCCCGAGCTATCCCTTTCGTGAAACTGATCTTCTTGTCAC
CCCTTTTTTTTGGTCTGGCGCACGCCCACCACGCCCTGCAGCGGGTGCGA
GAAGGATTGCCGGTAGGGGACGAGGGAAGGCGGGATGAAGGAGGCAAATC
CTAAAAGAGAGAGCACCTATGAAGAGCTGAGGCAAAAGAGCGTGAGGTTC
ATGAAATTCTGTTTTTCTCCCCTTCGCTCTCCTCGTTTGCCTCACAGCCC
GCACAGGCCCTCCTCGAAGTAGCGTTGCAAGTTGCCTACACCAGCATCTT
CGGCTGGTATGCAGGTAAGGGCATGTTGGGGGCCGGAGGGATAGAGAGAA
AGTTAGGAAAGAGGACGCCTTCAACTTTTCCCCATTCTCGATTATATATT
CAGTTACCTCTCTTTTTCCACTCTCCAGCGTTCCTTTTCCTCCGCACCGG
CTCTCTCCTGCCCTGCATCCTAACCCACTCCTTCTGCAACTTTGTGGGCC
TCCCAAACCTGGCCTTTATGCTTTCACCCTCCTCTCTTACGCCCTATCCT
GCCTTCGCCTTCCTCCTGTACGTGCATCGATGGAAGTTTCTCGCTGCTCA
CCTTCTAGGGATCGCCCTTTTTGTCGCACTTTTGTTCCCATTCTCGGATC
CGAAGCTGTTCACCGAGAGAAGATTAGAGGGGGAAAGAGGTGTGCCATTA
TACTGGCAATTAGAACGGCAAAAAAGGCATGCGAGGGCGAGGGGGTTGTG
GATAAATTCGTCCTTGAAAGGGAGCTCTGGAGGAATTAATCAAAGTAAAG
AAATGAAATGAAAATGTCTCTTTAAGTAGGCTTCGGCATATTTAGCGCTA
AATATCCCATTTGGCAATTGATGCTCGCTATTTTGCTTTTGATGACAGTG
AATTGTGGGCGTTAATCATTTATGATACTGGCCATGTATTCGACGCGCCC
GCGCCGCATCATCATATTTGGGAGAAATGAGACGGATCTCGAAGGAAGTA
AGTGCCCACCCAACAATTCACAGGCGAGGCCCAAGAATGTCTTTTACGTG
ATT
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Coding sequence (CDS) from alignment at scaffold_77:2335..4187-

>mRNA_10944 ID=mRNA_10944|Name=jgi.p|Nanoce1779_2|411143|organism=Nannochloropsis oceanica|type=CDS|length=3120bp|location=Sequence derived from alignment at scaffold_77:2335..4187- (Nannochloropsis oceanica)
CGTTCCTTTTCCTCCGCACCGGCTCTCTCCTGCCCTGCATCCTAACCCAC
TCCTTCTGCAACTTTGTGGGCCTCCCAAACCTGGCCTTTATGCTTTCACC
CTCCTCTCTTACGCCCTATCCTGCCTTCGCCTTCCTCCTGTACGTGCATC
GATGGAAGTTTCTCGCTGCTCACCTTCTAGGGATCGCCCTTTTTGTCGCA
CTTTTGTTCCCATTCTCGGATCCGAAGCTGTTCACCGAGAGAAGATTAGA
GGGGGAAAGAGGTGTGCCATTATACTGGCAATTAGAACGGCAAAAAAGGC
ATGCGAGGGCGAGGGGGTTGTGGATAAATTCGTCCTTGAAAGGGAGCTCT
GGAGGAATTAATCAAAGTAAAGAAATGAAATGACCCGCACAGGCCCTCCT
CGAAGTAGCGTTGCAAGTTGCCTACACCAGCATCTTCGGCTGGTATGCAG
GAAGTCGTATTCCGTGCCTGCATGCTCCCTCTCCTTTACCAAGCTTCCTC
CTCCCCTTCCTCCCTGGATTCCCCCCGAGCTATCCCTTTCGTGAAACTGA
TCTTCTTGTCACCCCTTTTTTTTGGTCTGGCGCACGCCCACCACGCCCTG
CAGCGGGTGCGAGAAGGATTGCCGATGCACCTATCCTCTTCTCCCCTCCT
CTTTCGGCTGCGTCGTCGTCGTATCCCCCTGCCCTCGACCTGGTACGACT
GGTGGGAGAGAAGGAGAATCGCGCACAGGCTGACCAAGGAAACGCTATGG
AGAAACCTGGTGGTGGCGCCACTGACGGAGCGTTCCTTTTCCTCCGCACC
GGCTCTCTCCTGCCCTGCATCCTAACCCACTCCTTCTGCAACTTTGTGGG
CCTCCCAAACCTGGCCTTTATGCTTTCACCCTCCTCTCTTACGCCCTATC
CTGCCTTCGCCTTCCTCCTGTACGTGCATCGATGGAAGTTTCTCGCTGCT
CACCTTCTAGGGATCGCCCTTTTTGTCGCACTTTTGTTCCCATTCTCGGA
TCCGAAGCTGTTCACCGAGAGAAGATTAGAGGGGGAAAGAGGTGTGCCAT
TATACTGGCAATTAGAACGGCAAAAAAGGCATGCGAGGGCGAGGGGGTTG
TGGATAAATTCGTCCTTGAAAGGGAGCTCTGGAGGAATTAATCAAAGTAA
AGAAATGAAATGACCCGCACAGGCCCTCCTCGAAGTAGCGTTGCAAGTTG
CCTACACCAGCATCTTCGGCTGGTATGCAGGAAGTCGTATTCCGTGCCTG
CATGCTCCCTCTCCTTTACCAAGCTTCCTCCTCCCCTTCCTCCCTGGATT
CCCCCCGAGCTATCCCTTTCGTGAAACTGATCTTCTTGTCACCCCTTTTT
TTTGGTCTGGCGCACGCCCACCACGCCCTGCAGCGGGTGCGAGAAGGATT
GCCGATGCACCTATCCTCTTCTCCCCTCCTCTTTCGGCTGCGTCGTCGTC
GTATCCCCCTGCCCTCGACCTGGTACGACTGGTGGGAGAGAAGGAGAATC
GCGCACAGGCTGACCAAGGAAACGCTATGGAGAAACCTGGTGGTGGCGCC
ACTGACGGAGCGTTCCTTTTCCTCCGCACCGGCTCTCTCCTGCCCTGCAT
CCTAACCCACTCCTTCTGCAACTTTGTGGGCCTCCCAAACCTGGCCTTTA
TGCTTTCACCCTCCTCTCTTACGCCCTATCCTGCCTTCGCCTTCCTCCTG
TACGTGCATCGATGGAAGTTTCTCGCTGCTCACCTTCTAGGGATCGCCCT
TTTTGTCGCACTTTTGTTCCCATTCTCGGATCCGAAGCTGTTCACCGAGA
GAAGATTAGAGGGGGAAAGAGGTGTGCCATTATACTGGCAATTAGAACGG
CAAAAAAGGCATGCGAGGGCGAGGGGGTTGTGGATAAATTCGTCCTTGAA
AGGGAGCTCTGGAGGAATTAATCAAAGTAAAGAAATGAAATGACCCGCAC
AGGCCCTCCTCGAAGTAGCGTTGCAAGTTGCCTACACCAGCATCTTCGGC
TGGTATGCAGGAAGTCGTATTCCGTGCCTGCATGCTCCCTCTCCTTTACC
AAGCTTCCTCCTCCCCTTCCTCCCTGGATTCCCCCCGAGCTATCCCTTTC
GTGAAACTGATCTTCTTGTCACCCCTTTTTTTTGGTCTGGCGCACGCCCA
CCACGCCCTGCAGCGGGTGCGAGAAGGATTGCCGATGCACCTATCCTCTT
CTCCCCTCCTCTTTCGGCTGCGTCGTCGTCGTATCCCCCTGCCCTCGACC
TGGTACGACTGGTGGGAGAGAAGGAGAATCGCGCACAGGCTGACCAAGGA
AACGCTATGGAGAAACCTGGTGGTGGCGCCACTGACGGAGCGTTCCTTTT
CCTCCGCACCGGCTCTCTCCTGCCCTGCATCCTAACCCACTCCTTCTGCA
ACTTTGTGGGCCTCCCAAACCTGGCCTTTATGCTTTCACCCTCCTCTCTT
ACGCCCTATCCTGCCTTCGCCTTCCTCCTGTACGTGCATCGATGGAAGTT
TCTCGCTGCTCACCTTCTAGGGATCGCCCTTTTTGTCGCACTTTTGTTCC
CATTCTCGGATCCGAAGCTGTTCACCGAGAGAAGATTAGAGGGGGAAAGA
GGTGTGCCATTATACTGGCAATTAGAACGGCAAAAAAGGCATGCGAGGGC
GAGGGGGTTGTGGATAAATTCGTCCTTGAAAGGGAGCTCTGGAGGAATTA
ATCAAAGTAAAGAAATGAAATGACCCGCACAGGCCCTCCTCGAAGTAGCG
TTGCAAGTTGCCTACACCAGCATCTTCGGCTGGTATGCAGGAAGTCGTAT
TCCGTGCCTGCATGCTCCCTCTCCTTTACCAAGCTTCCTCCTCCCCTTCC
TCCCTGGATTCCCCCCGAGCTATCCCTTTCGTGAAACTGATCTTCTTGTC
ACCCCTTTTTTTTGGTCTGGCGCACGCCCACCACGCCCTGCAGCGGGTGC
GAGAAGGATTGCCGATGCACCTATCCTCTTCTCCCCTCCTCTTTCGGCTG
CGTCGTCGTCGTATCCCCCTGCCCTCGACCTGGTACGACTGGTGGGAGAG
AAGGAGAATCGCGCACAGGCTGACCAAGGAAACGCTATGGAGAAACCTGG
TGGTGGCGCCACTGACGGAG
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Synonyms
Publications