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Properties
| Property Name | Value |
|---|
| TranscriptId | 590268 |
| Track | FilteredModels2 |
| ProteinId | 590182 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:463553..465417 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5742 ID=mRNA_5742|Name=jgi.p|Nanoce1779_2|590182|organism=Nannochloropsis oceanica|type=mRNA|length=1486bp
CAGACAGGCCTTGTTGTCCAAGATTTGGCAACTTGCCTGCGCCCTGCGCG
GGGTCAACGCGATCGCTCGCCAAATCCAGCACCTCATGGCCCAGCCGCCC
TCCCTCCCGCCCCTGCTCTGCCTCGGCCTCTGCCTTCTGAGTCTTGCCGT
TAGAACAACAAGCAGCAACGAGGATGGCATGGACACTTGGGTCGTGATGG
CATGTACGTCTCGCTTCTGGTTCAACTACCGGCATGTGGCTAACGCCCTC
TCCTTCTATCGGTTGGTCAAGCGCTTGGGGGTGCCTGACAGTCAGATTGT
GCTGATGCTGGCGGACGACATGCCTTGCAACCCCCGGAACGCCCGGCCAG
GCAAGGTGTACCGTGCCACGACGCATGCCACGGACCTGTGCACAGACGGA
ATTGAAGTGGACTACAAGGGGGACGAAGTGACTGTCGAGAATTTTGTTCG
AGTCTTGACGGGGCGGCACCCCGCAGGATGGCCTCTCTCCAAGCGTCTTT
TGAGCACCAATAGAAGCCGCGTACTCTTATACATGACAGGCCATGGTGGG
GACGAGTTTTTGAAGTTTCACAACCACGAGGAGATAAGCAGCAATGACCT
GGCCCATACCCTGGAAGACATGCAGGCCGCAGGGCGTTTCCAAGACTTGT
TCTTCATCGTCGATACCTGCCAAGGCGGCACGCTCTTCCGACAACTCCGC
ACGCCGGGTGTTCTGGCGATGGGCAGCAGTGGCCGGGGCGAAAATTCGTT
CGCCCATCAAAATGACATGAAATTAGGTATCGCCTTGATCGACCGCTTCA
CGGACGCCTCATGCGAGTATGTCCACAAGCTCGCTGACCGTGCGACTACG
TCAGAACTAAGCTCCGAGCTTGCTTTTTTGGCACAGATTTCTTTGTCCAT
GATGCTGCGGTCATACAATCCCGTGCAGCTCAAGTCTACGCCAGTTCTAC
GCACGGATTACTTTAGGACGGACAGAAAGAATGAGGGCGAGGAAGGAGGA
GACATCAACAATAATATTAGTGAGCACTTTGCCCGCATATCTGTCGCGTA
CTTTTTCGCCCAATCCAGGCAGGTTCGTTTGATCGCGATGAAGGCAGAGG
ATAAGGACAAAGACGAGGATGAATGCTGGAAAAGCAATTTCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGTTTTGATGGGTCCTGGCAAATATTTTC
TGTGCATGGCACGAACCGTCCTGACTCTGAACCACCGTCACATGTACCCA
TCATGTCAGCACATTTTCTAGAGAATCGCATGATTCATGCGTTGGCAATT
TTTCCTGTGTGTGCCGTGAGCTGGGCAGCGTGTAGAATGCGGTGATGAGA
GGAAACTTTTATGTGTAGGGCGAGTGATGCGACCCCACAATCGTTGTTGA
GACAATAATTCACATAAAGCTGAACAAGGCTAGATTCCCCTAATGCTAAC
AAAGTAGTAATCAAAAGAGCACTTGCTTGCTTGCCG back to topprotein sequence of jgi.p|Nanoce1779_2|590182 >mRNA_5742-protein ID=mRNA_5742-protein|Name=jgi.p|Nanoce1779_2|590182|organism=Nannochloropsis oceanica|type=polypeptide|length=420bp
MAQPPSLPPLLCLGLCLLSLAVRTTSSNEDGMDTWVVMACTSRFWFNYRH
VANALSFYRLVKRLGVPDSQIVLMLADDMPCNPRNARPGKVYRATTHATD
LCTDGIEVDYKGDEVTVENFVRVLTGRHPAGWPLSKRLLSTNRSRVLLYM
TGHGGDEFLKFHNHEEISSNDLAHTLEDMQAAGRFQDLFFIVDTCQGGTL
FRQLRTPGVLAMGSSGRGENSFAHQNDMKLGIALIDRFTDASCEYVHKLA
DRATTSELSSELAFLAQISLSMMLRSYNPVQLKSTPVLRTDYFRTDRKNE
GEEGGDINNNISEHFARISVAYFFAQSRQVRLIAMKAEDKDKDEDECWKS
NFSSSSSSSSSSSFDGSWQIFSVHGTNRPDSEPPSHVPIMSAHFLENRMI
HALAIFPVCAVSWAACRMR* back to topmRNA from alignment at scaffold_11:463553..465417- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5742 ID=mRNA_5742|Name=jgi.p|Nanoce1779_2|590182|organism=Nannochloropsis oceanica|type=mRNA|length=1865bp|location=Sequence derived from alignment at scaffold_11:463553..465417- (Nannochloropsis oceanica)
CAGACAGGCCTTGTTGTCCAAGATTTGGCAACTTGCCTGCGCCCTGCGCG
GGGTCAACGCGATCGCTCGCCAAATCCAGCACCTCATGGCCCAGCCGCCC
TCCCTCCCGCCCCTGCTCTGCCTCGGCCTCTGCCTTCTGAGTCTTGCCGT
TAGAACAACAAGCAGCAACGAGGATGGCATGGACACTTGGGTCGTGATGG
TACGATTTTATTGCCTATTAGTAGTCCTTATCGGCCCGGCGGGCATCGTT
CTTAACCTCCTCTTCCCCTCCCCCTGACCCCAAGGCATGTACGTCTCGCT
TCTGGTTCAACTACCGGCATGTGGCTAACGCCCTCTCCTTCTATCGGTTG
GTCAAGCGCTTGGGGGTGCCTGACAGTCAGATTGTGCTGATGCTGGCGGA
CGACATGCCTTGCAACCCCCGGAACGCCCGGCCAGGTCCGTGAATATGCC
TTGCTATACCTGTACCAGCTCTTGTCCCCATTCTATGCCTCATCTTTCCC
ACACCCTATTCTCGTTCTCTTACATAGGCAAGGTGTACCGTGCCACGACG
CATGCCACGGACCTGTGCACAGACGGAATTGAAGTGGACTACAAGGGGGA
CGAAGTGACTGTCGAGAATTTTGTTCGAGTCTTGACGGGGCGGCACCCCG
CAGGATGGCCTCTCTCCAAGCGTCTTTTGAGCACCAATAGAAGCCGCGTA
CTCTTATACATGACAGGCCATGGTGGGGACGAGTTTTTGAAGTTTCACAA
CCACGAGGAGATAAGCAGCAATGACCTGGTGCGGTACTCTCGGAGGGAGA
AATGAGCAGAGGCAGATGTGTCCGCAAGTGCTTGAGAATAAACTGGGAAT
GAGGATTAGCTCTGTTAGGGTAATGAGAATTACTTGAGGATTATCCCCCA
GCCCTTTACATTCACCCCATAAATTCCCGACTTTATCTCTTCCTCTCTTC
CTCTCTCCTTTCTGCTCCACTTCCCCTCAGGCCCATACCCTGGAAGACAT
GCAGGCCGCAGGGCGTTTCCAAGACTTGTTCTTCATCGTCGATACCTGCC
AAGGCGGCACGCTCTTCCGACAACTCCGCACGCCGGGTGTTCTGGCGATG
GGCAGCAGTGGCCGGGGCGAAAATTCGTTCGCCCATCAAAATGACATGAA
ATTAGGTATCGCCTTGATCGACCGCTTCACGGACGCCTCATGCGAGTATG
TCCACAAGCTCGCTGACCGTGCGACTACGTCAGAACTAAGCTCCGAGCTT
GCTTTTTTGGCACAGATTTCTTTGTCCATGATGCTGCGGTCATACAATCC
CGTGCAGCTCAAGTCTACGCCAGTTCTACGCACGGATTACTTTAGGACGG
ACAGAAAGAATGAGGGCGAGGAAGGAGGAGACATCAACAATAATATTAGT
GAGCACTTTGCCCGCATATCTGTCGCGTACTTTTTCGCCCAATCCAGGCA
GGTTCGTTTGATCGCGATGAAGGCAGAGGATAAGGACAAAGACGAGGATG
AATGCTGGAAAAGCAATTTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGTTTTGATGGGTCCTGGCAAATATTTTCTGTGCATGGCACGAACCGTCC
TGACTCTGAACCACCGTCACATGTACCCATCATGTCAGCACATTTTCTAG
AGAATCGCATGATTCATGCGTTGGCAATTTTTCCTGTGTGTGCCGTGAGC
TGGGCAGCGTGTAGAATGCGGTGATGAGAGGAAACTTTTATGTGTAGGGC
GAGTGATGCGACCCCACAATCGTTGTTGAGACAATAATTCACATAAAGCT
GAACAAGGCTAGATTCCCCTAATGCTAACAAAGTAGTAATCAAAAGAGCA
CTTGCTTGCTTGCCG back to topCoding sequence (CDS) from alignment at scaffold_11:463553..465417- >mRNA_5742 ID=mRNA_5742|Name=jgi.p|Nanoce1779_2|590182|organism=Nannochloropsis oceanica|type=CDS|length=5040bp|location=Sequence derived from alignment at scaffold_11:463553..465417- (Nannochloropsis oceanica)
GCCCATACCCTGGAAGACATGCAGGCCGCAGGGCGTTTCCAAGACTTGTT
CTTCATCGTCGATACCTGCCAAGGCGGCACGCTCTTCCGACAACTCCGCA
CGCCGGGTGTTCTGGCGATGGGCAGCAGTGGCCGGGGCGAAAATTCGTTC
GCCCATCAAAATGACATGAAATTAGGTATCGCCTTGATCGACCGCTTCAC
GGACGCCTCATGCGAGTATGTCCACAAGCTCGCTGACCGTGCGACTACGT
CAGAACTAAGCTCCGAGCTTGCTTTTTTGGCACAGATTTCTTTGTCCATG
ATGCTGCGGTCATACAATCCCGTGCAGCTCAAGTCTACGCCAGTTCTACG
CACGGATTACTTTAGGACGGACAGAAAGAATGAGGGCGAGGAAGGAGGAG
ACATCAACAATAATATTAGTGAGCACTTTGCCCGCATATCTGTCGCGTAC
TTTTTCGCCCAATCCAGGCAGGTTCGTTTGATCGCGATGAAGGCAGAGGA
TAAGGACAAAGACGAGGATGAATGCTGGAAAAGCAATTTCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGTTTTGATGGGTCCTGGCAAATATTTTCT
GTGCATGGCACGAACCGTCCTGACTCTGAACCACCGTCACATGTACCCAT
CATGTCAGCACATTTTCTAGAGAATCGCATGATTCATGCGTTGGCAATTT
TTCCTGTGTGTGCCGTGAGCTGGGCAGCGTGTAGAATGCGGTGAGCAAGG
TGTACCGTGCCACGACGCATGCCACGGACCTGTGCACAGACGGAATTGAA
GTGGACTACAAGGGGGACGAAGTGACTGTCGAGAATTTTGTTCGAGTCTT
GACGGGGCGGCACCCCGCAGGATGGCCTCTCTCCAAGCGTCTTTTGAGCA
CCAATAGAAGCCGCGTACTCTTATACATGACAGGCCATGGTGGGGACGAG
TTTTTGAAGTTTCACAACCACGAGGAGATAAGCAGCAATGACCTGGCATG
TACGTCTCGCTTCTGGTTCAACTACCGGCATGTGGCTAACGCCCTCTCCT
TCTATCGGTTGGTCAAGCGCTTGGGGGTGCCTGACAGTCAGATTGTGCTG
ATGCTGGCGGACGACATGCCTTGCAACCCCCGGAACGCCCGGCCAGATGG
CCCAGCCGCCCTCCCTCCCGCCCCTGCTCTGCCTCGGCCTCTGCCTTCTG
AGTCTTGCCGTTAGAACAACAAGCAGCAACGAGGATGGCATGGACACTTG
GGTCGTGATGGCCCATACCCTGGAAGACATGCAGGCCGCAGGGCGTTTCC
AAGACTTGTTCTTCATCGTCGATACCTGCCAAGGCGGCACGCTCTTCCGA
CAACTCCGCACGCCGGGTGTTCTGGCGATGGGCAGCAGTGGCCGGGGCGA
AAATTCGTTCGCCCATCAAAATGACATGAAATTAGGTATCGCCTTGATCG
ACCGCTTCACGGACGCCTCATGCGAGTATGTCCACAAGCTCGCTGACCGT
GCGACTACGTCAGAACTAAGCTCCGAGCTTGCTTTTTTGGCACAGATTTC
TTTGTCCATGATGCTGCGGTCATACAATCCCGTGCAGCTCAAGTCTACGC
CAGTTCTACGCACGGATTACTTTAGGACGGACAGAAAGAATGAGGGCGAG
GAAGGAGGAGACATCAACAATAATATTAGTGAGCACTTTGCCCGCATATC
TGTCGCGTACTTTTTCGCCCAATCCAGGCAGGTTCGTTTGATCGCGATGA
AGGCAGAGGATAAGGACAAAGACGAGGATGAATGCTGGAAAAGCAATTTC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTTTGATGGGTCCTGGCA
AATATTTTCTGTGCATGGCACGAACCGTCCTGACTCTGAACCACCGTCAC
ATGTACCCATCATGTCAGCACATTTTCTAGAGAATCGCATGATTCATGCG
TTGGCAATTTTTCCTGTGTGTGCCGTGAGCTGGGCAGCGTGTAGAATGCG
GTGAGCAAGGTGTACCGTGCCACGACGCATGCCACGGACCTGTGCACAGA
CGGAATTGAAGTGGACTACAAGGGGGACGAAGTGACTGTCGAGAATTTTG
TTCGAGTCTTGACGGGGCGGCACCCCGCAGGATGGCCTCTCTCCAAGCGT
CTTTTGAGCACCAATAGAAGCCGCGTACTCTTATACATGACAGGCCATGG
TGGGGACGAGTTTTTGAAGTTTCACAACCACGAGGAGATAAGCAGCAATG
ACCTGGCATGTACGTCTCGCTTCTGGTTCAACTACCGGCATGTGGCTAAC
GCCCTCTCCTTCTATCGGTTGGTCAAGCGCTTGGGGGTGCCTGACAGTCA
GATTGTGCTGATGCTGGCGGACGACATGCCTTGCAACCCCCGGAACGCCC
GGCCAGATGGCCCAGCCGCCCTCCCTCCCGCCCCTGCTCTGCCTCGGCCT
CTGCCTTCTGAGTCTTGCCGTTAGAACAACAAGCAGCAACGAGGATGGCA
TGGACACTTGGGTCGTGATGGCCCATACCCTGGAAGACATGCAGGCCGCA
GGGCGTTTCCAAGACTTGTTCTTCATCGTCGATACCTGCCAAGGCGGCAC
GCTCTTCCGACAACTCCGCACGCCGGGTGTTCTGGCGATGGGCAGCAGTG
GCCGGGGCGAAAATTCGTTCGCCCATCAAAATGACATGAAATTAGGTATC
GCCTTGATCGACCGCTTCACGGACGCCTCATGCGAGTATGTCCACAAGCT
CGCTGACCGTGCGACTACGTCAGAACTAAGCTCCGAGCTTGCTTTTTTGG
CACAGATTTCTTTGTCCATGATGCTGCGGTCATACAATCCCGTGCAGCTC
AAGTCTACGCCAGTTCTACGCACGGATTACTTTAGGACGGACAGAAAGAA
TGAGGGCGAGGAAGGAGGAGACATCAACAATAATATTAGTGAGCACTTTG
CCCGCATATCTGTCGCGTACTTTTTCGCCCAATCCAGGCAGGTTCGTTTG
ATCGCGATGAAGGCAGAGGATAAGGACAAAGACGAGGATGAATGCTGGAA
AAGCAATTTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTTTGATG
GGTCCTGGCAAATATTTTCTGTGCATGGCACGAACCGTCCTGACTCTGAA
CCACCGTCACATGTACCCATCATGTCAGCACATTTTCTAGAGAATCGCAT
GATTCATGCGTTGGCAATTTTTCCTGTGTGTGCCGTGAGCTGGGCAGCGT
GTAGAATGCGGTGAGCAAGGTGTACCGTGCCACGACGCATGCCACGGACC
TGTGCACAGACGGAATTGAAGTGGACTACAAGGGGGACGAAGTGACTGTC
GAGAATTTTGTTCGAGTCTTGACGGGGCGGCACCCCGCAGGATGGCCTCT
CTCCAAGCGTCTTTTGAGCACCAATAGAAGCCGCGTACTCTTATACATGA
CAGGCCATGGTGGGGACGAGTTTTTGAAGTTTCACAACCACGAGGAGATA
AGCAGCAATGACCTGGCATGTACGTCTCGCTTCTGGTTCAACTACCGGCA
TGTGGCTAACGCCCTCTCCTTCTATCGGTTGGTCAAGCGCTTGGGGGTGC
CTGACAGTCAGATTGTGCTGATGCTGGCGGACGACATGCCTTGCAACCCC
CGGAACGCCCGGCCAGATGGCCCAGCCGCCCTCCCTCCCGCCCCTGCTCT
GCCTCGGCCTCTGCCTTCTGAGTCTTGCCGTTAGAACAACAAGCAGCAAC
GAGGATGGCATGGACACTTGGGTCGTGATGGCCCATACCCTGGAAGACAT
GCAGGCCGCAGGGCGTTTCCAAGACTTGTTCTTCATCGTCGATACCTGCC
AAGGCGGCACGCTCTTCCGACAACTCCGCACGCCGGGTGTTCTGGCGATG
GGCAGCAGTGGCCGGGGCGAAAATTCGTTCGCCCATCAAAATGACATGAA
ATTAGGTATCGCCTTGATCGACCGCTTCACGGACGCCTCATGCGAGTATG
TCCACAAGCTCGCTGACCGTGCGACTACGTCAGAACTAAGCTCCGAGCTT
GCTTTTTTGGCACAGATTTCTTTGTCCATGATGCTGCGGTCATACAATCC
CGTGCAGCTCAAGTCTACGCCAGTTCTACGCACGGATTACTTTAGGACGG
ACAGAAAGAATGAGGGCGAGGAAGGAGGAGACATCAACAATAATATTAGT
GAGCACTTTGCCCGCATATCTGTCGCGTACTTTTTCGCCCAATCCAGGCA
GGTTCGTTTGATCGCGATGAAGGCAGAGGATAAGGACAAAGACGAGGATG
AATGCTGGAAAAGCAATTTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGTTTTGATGGGTCCTGGCAAATATTTTCTGTGCATGGCACGAACCGTCC
TGACTCTGAACCACCGTCACATGTACCCATCATGTCAGCACATTTTCTAG
AGAATCGCATGATTCATGCGTTGGCAATTTTTCCTGTGTGTGCCGTGAGC
TGGGCAGCGTGTAGAATGCGGTGAGCAAGGTGTACCGTGCCACGACGCAT
GCCACGGACCTGTGCACAGACGGAATTGAAGTGGACTACAAGGGGGACGA
AGTGACTGTCGAGAATTTTGTTCGAGTCTTGACGGGGCGGCACCCCGCAG
GATGGCCTCTCTCCAAGCGTCTTTTGAGCACCAATAGAAGCCGCGTACTC
TTATACATGACAGGCCATGGTGGGGACGAGTTTTTGAAGTTTCACAACCA
CGAGGAGATAAGCAGCAATGACCTGGCATGTACGTCTCGCTTCTGGTTCA
ACTACCGGCATGTGGCTAACGCCCTCTCCTTCTATCGGTTGGTCAAGCGC
TTGGGGGTGCCTGACAGTCAGATTGTGCTGATGCTGGCGGACGACATGCC
TTGCAACCCCCGGAACGCCCGGCCAGATGGCCCAGCCGCCCTCCCTCCCG
CCCCTGCTCTGCCTCGGCCTCTGCCTTCTGAGTCTTGCCGTTAGAACAAC
AAGCAGCAACGAGGATGGCATGGACACTTGGGTCGTGATG back to top
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