jgi.p|Nanoce1779_2|595840, gene_7165 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595840
Unique Namegene_7165
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_16:431640..433673 +

Link to JBrowse

Properties
Property NameValue
TranscriptId595926
ProteinId595840
Product namePLC-like phosphodiesterase, TIM beta/alpha-barrel-containing protein domain-containing protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:431640..433673 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004112cyclic-nucleotide phosphodiesterase activity
GO:00041153',5'-cyclic-AMP phosphodiesterase activity
GO:0004117calmodulin-dependent cyclic-nucleotide phosphodiesterase activity
GO:0004118cGMP-stimulated cyclic-nucleotide phosphodiesterase activity
GO:0004119cGMP-inhibited cyclic-nucleotide phosphodiesterase activity
GO:0004120photoreceptor cyclic-nucleotide phosphodiesterase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005966cyclic-nucleotide phosphodiesterase complex
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL025ncniL025Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G01530NO22G01530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595840mRNA_7165-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595840mRNA_7165Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|595840

>mRNA_7165-protein ID=mRNA_7165-protein|Name=jgi.p|Nanoce1779_2|595840|organism=Nannochloropsis oceanica|type=polypeptide|length=355bp
MGPNKQREEEALMYNRSSSSTASIGAGEKEEQELASLQNLDPLPPIVLGL
LYALLPTPSLLALRCCSKAHLVRFHDGVNWEPVSQRLVVELHASRLRLET
ASDVCGPPPAPWPQEEEGIEGGPDGHEQQQQHHHHRLDHHPRPPPRLVPR
PLAVGHRGACGHLQGNSLASFHHAVALGADMIELDVCIDRSGDLVVHHDR
YLPDGRLLDTLTLPEIRRVAPEVEPLSRVLRELVRSGVTLYLDVKSDRVV
APLMRLLHGAILRGGWEARRLLIASFNQYDMIEVNAHRLAYPATLGTVQT
CIIVDGVPISFAREYAALGVTWCSIGDGCVLPSFLEDAHTRGIGVMVWTV
NNPK*
back to top
Synonyms
Publications