jgi.p|Nanoce1779_2|595840, mRNA_7165 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|595840
Unique Name	mRNA_7165
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1630
Alignment location	scaffold_16:431640..433673 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	595926
Track	FilteredModels2
ProteinId	595840

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:431640..433673 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595840	gene_7165	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595840	mRNA_7165-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7165	CDS_7165	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:431640..433673+
coding sequence from alignment at scaffold_16:431640..433673+

mRNA sequence

>mRNA_7165 ID=mRNA_7165|Name=jgi.p|Nanoce1779_2|595840|organism=Nannochloropsis oceanica|type=mRNA|length=1630bp
CAGATCTGCACGGGCAGTACTGAGAGATGATAAAAACGCGGTGTTAGGAA
GACTGTAGGAGACAAAAGAGGCACGCCGCCACGCGGGAACGAGAGGACGC
GCAAAACTACCCCGCACACGCCAATTATGGGACCCAACAAGCAACGAGAG
GAGGAGGCACTCATGTATAACCGCAGCAGCAGTAGTACGGCCAGCATTGG
CGCTGGAGAGAAGGAGGAACAGGAGTTAGCGTCGTTACAAAATCTGGACC
CCTTGCCTCCCATAGTCTTGGGATTGCTTTACGCGCTTTTGCCCACGCCT
TCCCTTTTGGCCTTGAGGTGTTGTAGCAAGGCCCACCTCGTACGCTTTCA
CGACGGGGTCAACTGGGAGCCGGTATCTCAACGTTTGGTAGTCGAGCTAC
ATGCTTCGCGTCTCCGGCTTGAGACGGCCTCGGATGTTTGTGGGCCCCCT
CCGGCCCCCTGGCCACAGGAGGAGGAAGGAATAGAAGGAGGGCCAGATGG
TCATGAGCAGCAGCAGCAGCACCATCACCATCGCCTTGACCATCATCCTC
GTCCTCCCCCTCGTTTGGTTCCTCGTCCCTTGGCTGTGGGTCATCGGGGG
GCGTGTGGGCACCTGCAAGGCAACTCACTGGCCTCTTTCCACCATGCCGT
TGCCTTGGGCGCGGATATGATTGAGTTGGACGTGTGCATCGACCGGTCGG
GGGATTTGGTGGTGCACCACGACCGATACTTGCCTGATGGTCGCTTGTTG
GATACCTTGACATTACCGGAGATTAGGAGAGTGGCGCCGGAAGTGGAGCC
CTTGAGTAGGGTGTTGAGGGAGTTAGTGAGGAGTGGGGTAACGCTTTACT
TGGACGTCAAATCGGATCGTGTGGTGGCGCCGTTGATGCGGTTGTTGCAC
GGAGCGATCTTGAGGGGGGGCTGGGAGGCACGCAGGTTGCTCATCGCCAG
TTTCAACCAGTATGACATGATCGAAGTGAACGCCCACCGACTCGCCTACC
CAGCTACGTTAGGGACCGTGCAGACCTGTATAATTGTTGATGGTGTTCCC
ATTTCCTTCGCGAGGGAATATGCGGCCCTGGGGGTGACGTGGTGCTCCAT
AGGCGATGGCTGTGTATTGCCCTCCTTCTTGGAGGACGCGCACACCCGCG
GCATTGGCGTCATGGTGTGGACGGTGAATAACCCCAAGTAAGGAGGGTGA
TGCTGAAGCGAGGGAGTGAGGGAGGGAAGGAGGGAGTTGGTGGGAAGATA
ATTTGGTTTAGCGCGATACCACTCGTTGTTTGACATGCCTAGGACCATCA
TCTCCCATCCCTTCCTTCCTCCTTTTCTCCCTCCCTACGGCGTCATGGGA
GGCCGCAATGAGAAGAGAGCAGACGCTTCTGTGCCTAATCCCCCCCCCTC
CTCTCCCTTCCTTTCTCCCTTCAGCGTCATGCGGCGCTACGCCGAGCTGG
GAGTCGATGCCCTCGTCACTGATTTCCCTGAGCGATTCGTGGCCGTGCGA
CAAGAAGGGGAAGATGCCCTACGTGCCGCCCAAGAGGCCTCCACAGCAGC
AGCAGTAGCAGCAGCAGCGGCCGCTGCAACGATGGAGGGGGAGCGGAAAC
GAGGGGGAGAGATGGGGAGGGAGGAAGAGA

protein sequence of jgi.p|Nanoce1779_2|595840

>mRNA_7165-protein ID=mRNA_7165-protein|Name=jgi.p|Nanoce1779_2|595840|organism=Nannochloropsis oceanica|type=polypeptide|length=355bp
MGPNKQREEEALMYNRSSSSTASIGAGEKEEQELASLQNLDPLPPIVLGL
LYALLPTPSLLALRCCSKAHLVRFHDGVNWEPVSQRLVVELHASRLRLET
ASDVCGPPPAPWPQEEEGIEGGPDGHEQQQQHHHHRLDHHPRPPPRLVPR
PLAVGHRGACGHLQGNSLASFHHAVALGADMIELDVCIDRSGDLVVHHDR
YLPDGRLLDTLTLPEIRRVAPEVEPLSRVLRELVRSGVTLYLDVKSDRVV
APLMRLLHGAILRGGWEARRLLIASFNQYDMIEVNAHRLAYPATLGTVQT
CIIVDGVPISFAREYAALGVTWCSIGDGCVLPSFLEDAHTRGIGVMVWTV
NNPK*

mRNA from alignment at scaffold_16:431640..433673+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7165 ID=mRNA_7165|Name=jgi.p|Nanoce1779_2|595840|organism=Nannochloropsis oceanica|type=mRNA|length=2034bp|location=Sequence derived from alignment at scaffold_16:431640..433673+ (Nannochloropsis oceanica)
CAGATCTGCACGGGCAGTACTGAGAGATGATAAAAACGCGGTGTTAGGAA
GACTGTAGGAGACAAAAGAGGCACGCCGCCACGCGGGAACGAGAGGACGC
GCAAAACTACCCCGCACACGCCAATTATGGGACCCAACAAGCAACGAGAG
GAGGAGGCACTCATGTATAACCGCAGCAGCAGTAGTACGGCCAGCATTGG
CGCTGGAGAGAAGGAGGAACAGGAGTTAGCGTCGTTACAAAATCTGGACC
CCTTGCCTCCCATAGTCTTGGGATTGCTTTACGCGCTTTTGCCCACGCCT
TCCCTTTTGGCCTTGAGGTGTTGTAGCAAGGTGAGAAGAAGGCTGAGGGA
TATTGCGTGTTTTTGCATGTGCATGGATGAGCAGGAGGGGACAGGTGGAG
TGGAAATCTTCGCGAGACAGGAGTTTCCGATGGAAAAAGAGAAATAGGAA
GACGCCTCTGTCAAAATTTGGCCTCGGTGAGGTGCACAGACGCAACACAG
ACAATGTATATTCCATCCATTTGGATTTGTTGAAAAAAGGAAAAGGATCT
GATAGCCGTGCGTCAGAATTCAAATTCATTAGCACGAATGAGATTTTCAC
CCCTCCTCCTTCCCTCCTTTCCTCACCCGCTCTCAGGCCCACCTCGTACG
CTTTCACGACGGGGTCAACTGGGAGCCGGTATCTCAACGTTTGGTAGTCG
AGCTACATGCTTCGCGTCTCCGGCTTGAGACGGCCTCGGATGTTTGTGGG
CCCCCTCCGGCCCCCTGGCCACAGGAGGAGGAAGGAATAGAAGGAGGGCC
AGATGGTCATGAGCAGCAGCAGCAGCACCATCACCATCGCCTTGACCATC
ATCCTCGTCCTCCCCCTCGTTTGGTTCCTCGTCCCTTGGCTGTGGGTCAT
CGGGGGGCGTGTGGGCACCTGCAAGGCAACTCACTGGCCTCTTTCCACCA
TGCCGTTGCCTTGGGCGCGGATATGATTGAGTTGGACGTGTGCATCGACC
GGTCGGGGGATTTGGTGGTGCACCACGACCGATACTTGCCTGATGGTCGC
TTGTTGGATACCTTGACATTACCGGAGATTAGGAGAGTGGCGCCGGAAGT
GGAGCCCTTGAGTAGGGTGTTGAGGGAGTTAGTGAGGAGTGGGGTAACGC
TTTACTTGGACGTCAAATCGGATCGTGTGGTGGCGCCGTTGATGCGGTTG
TTGCACGGAGCGATCTTGAGGGGGGGCTGGGAGGCACGCAGGTGAGTATT
GACGTCTTGCTGGGTTTGTTGTGTCGGTTGTTCCTGCGCTAACCCCTCTC
TCTCCCTCTCCCTTCCTCCCTCCCTTCTTTCCTTCCTAGGTTGCTCATCG
CCAGTTTCAACCAGTATGACATGATCGAAGTGAACGCCCACCGACTCGCC
TACCCAGCTACGTTAGGGACCGTGCAGACCTGTATAATTGTTGATGGTGT
TCCCATTTCCTTCGCGAGGGAATATGCGGCCCTGGGGGTGACGTGGTGCT
CCATAGGCGATGGCTGTGTATTGCCCTCCTTCTTGGAGGACGCGCACACC
CGCGGCATTGGCGTCATGGTGTGGACGGTGAATAACCCCAAGTAAGGAGG
GTGATGCTGAAGCGAGGGAGTGAGGGAGGGAAGGAGGGAGTTGGTGGGAA
GATAATTTGGTTTAGCGCGATACCACTCGTTGTTTGACATGCCTAGGACC
ATCATCTCCCATCCCTTCCTTCCTCCTTTTCTCCCTCCCTACGGCGTCAT
GGGAGGCCGCAATGAGAAGAGAGCAGACGCTTCTGTGCCTAATCCCCCCC
CCTCCTCTCCCTTCCTTTCTCCCTTCAGCGTCATGCGGCGCTACGCCGAG
CTGGGAGTCGATGCCCTCGTCACTGATTTCCCTGAGCGATTCGTGGCCGT
GCGACAAGAAGGGGAAGATGCCCTACGTGCCGCCCAAGAGGCCTCCACAG
CAGCAGCAGTAGCAGCAGCAGCGGCCGCTGCAACGATGGAGGGGGAGCGG
AAACGAGGGGGAGAGATGGGGAGGGAGGAAGAGA

Coding sequence (CDS) from alignment at scaffold_16:431640..433673+

>mRNA_7165 ID=mRNA_7165|Name=jgi.p|Nanoce1779_2|595840|organism=Nannochloropsis oceanica|type=CDS|length=3195bp|location=Sequence derived from alignment at scaffold_16:431640..433673+ (Nannochloropsis oceanica)
ATGGGACCCAACAAGCAACGAGAGGAGGAGGCACTCATGTATAACCGCAG
CAGCAGTAGTACGGCCAGCATTGGCGCTGGAGAGAAGGAGGAACAGGAGT
TAGCGTCGTTACAAAATCTGGACCCCTTGCCTCCCATAGTCTTGGGATTG
CTTTACGCGCTTTTGCCCACGCCTTCCCTTTTGGCCTTGAGGTGTTGTAG
CAAGGCCCACCTCGTACGCTTTCACGACGGGGTCAACTGGGAGCCGGTAT
CTCAACGTTTGGTAGTCGAGCTACATGCTTCGCGTCTCCGGCTTGAGACG
GCCTCGGATGTTTGTGGGCCCCCTCCGGCCCCCTGGCCACAGGAGGAGGA
AGGAATAGAAGGAGGGCCAGATGGTCATGAGCAGCAGCAGCAGCACCATC
ACCATCGCCTTGACCATCATCCTCGTCCTCCCCCTCGTTTGGTTCCTCGT
CCCTTGGCTGTGGGTCATCGGGGGGCGTGTGGGCACCTGCAAGGCAACTC
ACTGGCCTCTTTCCACCATGCCGTTGCCTTGGGCGCGGATATGATTGAGT
TGGACGTGTGCATCGACCGGTCGGGGGATTTGGTGGTGCACCACGACCGA
TACTTGCCTGATGGTCGCTTGTTGGATACCTTGACATTACCGGAGATTAG
GAGAGTGGCGCCGGAAGTGGAGCCCTTGAGTAGGGTGTTGAGGGAGTTAG
TGAGGAGTGGGGTAACGCTTTACTTGGACGTCAAATCGGATCGTGTGGTG
GCGCCGTTGATGCGGTTGTTGCACGGAGCGATCTTGAGGGGGGGCTGGGA
GGCACGCAGGTTGCTCATCGCCAGTTTCAACCAGTATGACATGATCGAAG
TGAACGCCCACCGACTCGCCTACCCAGCTACGTTAGGGACCGTGCAGACC
TGTATAATTGTTGATGGTGTTCCCATTTCCTTCGCGAGGGAATATGCGGC
CCTGGGGGTGACGTGGTGCTCCATAGGCGATGGCTGTGTATTGCCCTCCT
TCTTGGAGGACGCGCACACCCGCGGCATTGGCGTCATGGTGTGGACGGTG
AATAACCCCAAGTAAATGGGACCCAACAAGCAACGAGAGGAGGAGGCACT
CATGTATAACCGCAGCAGCAGTAGTACGGCCAGCATTGGCGCTGGAGAGA
AGGAGGAACAGGAGTTAGCGTCGTTACAAAATCTGGACCCCTTGCCTCCC
ATAGTCTTGGGATTGCTTTACGCGCTTTTGCCCACGCCTTCCCTTTTGGC
CTTGAGGTGTTGTAGCAAGGCCCACCTCGTACGCTTTCACGACGGGGTCA
ACTGGGAGCCGGTATCTCAACGTTTGGTAGTCGAGCTACATGCTTCGCGT
CTCCGGCTTGAGACGGCCTCGGATGTTTGTGGGCCCCCTCCGGCCCCCTG
GCCACAGGAGGAGGAAGGAATAGAAGGAGGGCCAGATGGTCATGAGCAGC
AGCAGCAGCACCATCACCATCGCCTTGACCATCATCCTCGTCCTCCCCCT
CGTTTGGTTCCTCGTCCCTTGGCTGTGGGTCATCGGGGGGCGTGTGGGCA
CCTGCAAGGCAACTCACTGGCCTCTTTCCACCATGCCGTTGCCTTGGGCG
CGGATATGATTGAGTTGGACGTGTGCATCGACCGGTCGGGGGATTTGGTG
GTGCACCACGACCGATACTTGCCTGATGGTCGCTTGTTGGATACCTTGAC
ATTACCGGAGATTAGGAGAGTGGCGCCGGAAGTGGAGCCCTTGAGTAGGG
TGTTGAGGGAGTTAGTGAGGAGTGGGGTAACGCTTTACTTGGACGTCAAA
TCGGATCGTGTGGTGGCGCCGTTGATGCGGTTGTTGCACGGAGCGATCTT
GAGGGGGGGCTGGGAGGCACGCAGGTTGCTCATCGCCAGTTTCAACCAGT
ATGACATGATCGAAGTGAACGCCCACCGACTCGCCTACCCAGCTACGTTA
GGGACCGTGCAGACCTGTATAATTGTTGATGGTGTTCCCATTTCCTTCGC
GAGGGAATATGCGGCCCTGGGGGTGACGTGGTGCTCCATAGGCGATGGCT
GTGTATTGCCCTCCTTCTTGGAGGACGCGCACACCCGCGGCATTGGCGTC
ATGGTGTGGACGGTGAATAACCCCAAGTAAATGGGACCCAACAAGCAACG
AGAGGAGGAGGCACTCATGTATAACCGCAGCAGCAGTAGTACGGCCAGCA
TTGGCGCTGGAGAGAAGGAGGAACAGGAGTTAGCGTCGTTACAAAATCTG
GACCCCTTGCCTCCCATAGTCTTGGGATTGCTTTACGCGCTTTTGCCCAC
GCCTTCCCTTTTGGCCTTGAGGTGTTGTAGCAAGGCCCACCTCGTACGCT
TTCACGACGGGGTCAACTGGGAGCCGGTATCTCAACGTTTGGTAGTCGAG
CTACATGCTTCGCGTCTCCGGCTTGAGACGGCCTCGGATGTTTGTGGGCC
CCCTCCGGCCCCCTGGCCACAGGAGGAGGAAGGAATAGAAGGAGGGCCAG
ATGGTCATGAGCAGCAGCAGCAGCACCATCACCATCGCCTTGACCATCAT
CCTCGTCCTCCCCCTCGTTTGGTTCCTCGTCCCTTGGCTGTGGGTCATCG
GGGGGCGTGTGGGCACCTGCAAGGCAACTCACTGGCCTCTTTCCACCATG
CCGTTGCCTTGGGCGCGGATATGATTGAGTTGGACGTGTGCATCGACCGG
TCGGGGGATTTGGTGGTGCACCACGACCGATACTTGCCTGATGGTCGCTT
GTTGGATACCTTGACATTACCGGAGATTAGGAGAGTGGCGCCGGAAGTGG
AGCCCTTGAGTAGGGTGTTGAGGGAGTTAGTGAGGAGTGGGGTAACGCTT
TACTTGGACGTCAAATCGGATCGTGTGGTGGCGCCGTTGATGCGGTTGTT
GCACGGAGCGATCTTGAGGGGGGGCTGGGAGGCACGCAGGTTGCTCATCG
CCAGTTTCAACCAGTATGACATGATCGAAGTGAACGCCCACCGACTCGCC
TACCCAGCTACGTTAGGGACCGTGCAGACCTGTATAATTGTTGATGGTGT
TCCCATTTCCTTCGCGAGGGAATATGCGGCCCTGGGGGTGACGTGGTGCT
CCATAGGCGATGGCTGTGTATTGCCCTCCTTCTTGGAGGACGCGCACACC
CGCGGCATTGGCGTCATGGTGTGGACGGTGAATAACCCCAAGTAA

Synonyms

Publications