jgi.p|Nanoce1779_2|524140, mRNA_499 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|524140
Unique Name	mRNA_499
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1074
Alignment location	scaffold_3:1207538..1209008 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	524226
Track	FilteredModels2
ProteinId	524140

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1207538..1209008 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|524140	gene_499	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|524140	mRNA_499-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_499	CDS_499	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1207538..1209008+
coding sequence from alignment at scaffold_3:1207538..1209008+

mRNA sequence

>mRNA_499 ID=mRNA_499|Name=jgi.p|Nanoce1779_2|524140|organism=Nannochloropsis oceanica|type=mRNA|length=1074bp
ATGGTCCTCAACCCGGCCAAGGGCCAATCGCCTCTCCACAAGGTATCGAT
TGTGGGCAGCGGCAACTTCGGTTCCGCCGTGGCCCGCCTCTTAGGTCGCA
ATGTCCTGCAACACCCCAAACACTTTGAGACGGATATTCGTATGTGGGTC
TTTGAGGAGGAGCTGCCCGACGGTCGGAAGTTGAGCGAGGTCATTAATGC
TGAGCATGAAAACGTCAAGTACTTGCCTGGGGTCCGACTACCCTCCAATG
TACGGGCAATCCCTGATTTGGAAGTCGCGGTAAGAGATGCATCAATCATC
ATTATGGTCGTGCCGCAACAACATTGTGCCACCTTGCTTCCTCGCCTCCG
GTCCTGCATACGGCAAGGTGCCGTAGCCGTCTCTTTGATCAAAGGGTTAG
ACTTCGATGACAATGGTCCCGTGCTTATCACTGACTTAATTCGGAAGGGC
CTGGGCGGAGATGTCGAAGTTTGCGTCTTGATGGGCGCCAACGTGGCCGA
CGAAGTGGCTCGCGATGAGTTTTGCGAGGCCACAGTCGGGTGTCGTGATA
CGACCGGGGCAGGTTTATTGGTACAGCGGCTATTCGATTGCCCGAGATTT
CGAGTGGAGGTGGCGCCTGACCCTATGGGCGTCGAGCTGTGCGGAGCCCT
GAAAAATGTGGTGGCCCTTGGGGCGGGCTTCTGCGATGGGCTGGGCTGGG
GGGGGAATACGAAGGCAGCTGTCATTCGCCGAGGCCTCCTAGAAATGCGT
CGGCTCTGCAAACTCCTTGATCCCCATGTTCGCGATGCCACGTTCTTCGA
GAGCTGTGGTGTGGCCGATCTTATTACCACCTGCTATGGTGGGCGGAACA
GGAAGTGTGCCGAGCGTTTCGCCCGGGCAGACGGAAACATGTCGTGGGAC
GACATCGAGAAGGAGCAATTGGGGGGTCAACACTTGCAAGGGACTAAGAC
AGCGGCCAATCTCCACAGTCTACTAGAGCGAAAGAGGGTAGTGGGTGATT
TTCCTTTGTTTTCCACAGTGTACCAAATTGCATTTCGAGGGCGACATCCA
AGAACTTTGGTAAATGACCTGTGA

protein sequence of jgi.p|Nanoce1779_2|524140

>mRNA_499-protein ID=mRNA_499-protein|Name=jgi.p|Nanoce1779_2|524140|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MVLNPAKGQSPLHKVSIVGSGNFGSAVARLLGRNVLQHPKHFETDIRMWV
FEEELPDGRKLSEVINAEHENVKYLPGVRLPSNVRAIPDLEVAVRDASII
IMVVPQQHCATLLPRLRSCIRQGAVAVSLIKGLDFDDNGPVLITDLIRKG
LGGDVEVCVLMGANVADEVARDEFCEATVGCRDTTGAGLLVQRLFDCPRF
RVEVAPDPMGVELCGALKNVVALGAGFCDGLGWGGNTKAAVIRRGLLEMR
RLCKLLDPHVRDATFFESCGVADLITTCYGGRNRKCAERFARADGNMSWD
DIEKEQLGGQHLQGTKTAANLHSLLERKRVVGDFPLFSTVYQIAFRGRHP
RTLVNDL*

mRNA from alignment at scaffold_3:1207538..1209008+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_499 ID=mRNA_499|Name=jgi.p|Nanoce1779_2|524140|organism=Nannochloropsis oceanica|type=mRNA|length=1471bp|location=Sequence derived from alignment at scaffold_3:1207538..1209008+ (Nannochloropsis oceanica)
ATGGTCCTCAACCCGGCCAAGGGCCAATCGCCTCTCCACAAGGTATCGAT
TGTGGGCAGCGGCAACTTCGGTTCCGCCGTGGCCCGCCTCTTAGGTCGCA
ATGTCCTGCAACACCCCAAACACTTTGAGACGGATATTCGTATGTGGGTC
TTTGAGGAGGAGCTGCCCGACGGTCGGAAGTTGAGCGAGGTCATTAATGC
TGAGCATGAAAACGTCAAGTACTTGCCTGGGGTCCGACTACCCTCCAATG
TACGGGCAATCCCTGATTTGGAAGTCGCGGTAAGAGATGCATCAATCATC
ATTATGGTCGTGCCGCAACAACATTGTGCCACCTGTGAGTTCTGCATACT
GGGAATTGGATAGAAGACTGGGGGTGAAGTGTCCAGGGGGGCACATGTCC
CGATTGCCGGGGATGTGTATGTCGCTCGCGTGCTTTGGCTTGTTGATTTT
AAGATTAAAGAGGTTCTCCCCATCTCTAATATTCTCCATTTACCATTTAG
CCTATAGCAACTAGTGCTTGGATATCCCTTACTTTTAGTCGTCCTCTCTT
CCCACCACCTATTCCCTCTTCCGCCCCGAATAGTGCTTCCTCGCCTCCGG
TCCTGCATACGGCAAGGTGCCGTAGCCGTCTCTTTGATCAAAGGGTTAGA
CTTCGATGACAATGGTCCCGTGCTTATCACTGACTTAATTCGGAAGGGCC
TGGGCGGAGATGTCGAAGTTTGCGTCTTGATGGGCGCCAACGTGGCCGAC
GAAGTGGCTCGCGATGAGTTTTGCGAGGCCACAGTCGGGTGTCGTGATAC
GACCGGGGCAGGTTTATTGGTACAGCGGCTATTCGATTGCCCGAGATTTC
GAGTGGAGGTGGCGCCTGACCCTATGGGCGTCGAGCTGTGCGGAGCCCTG
AAAAATGTGGTGGCCCTTGGGGCGGGCTTCTGCGATGGGCTGGGCTGGGG
GGGGAATACGAAGGTATGTTGTTTTCGTGCGTGCTTAAATGCCGGTATTT
GATTATTGTTACAGGTTGATGTAAGTGCTGACCGTCGCTTCATCCCGTGC
TTTCCATTCATTCGTCGCTCGTTTCCTCTTTTGGTCATGCCCTCATTCCT
TCTTTCCGTAGGCAGCTGTCATTCGCCGAGGCCTCCTAGAAATGCGTCGG
CTCTGCAAACTCCTTGATCCCCATGTTCGCGATGCCACGTTCTTCGAGAG
CTGTGGTGTGGCCGATCTTATTACCACCTGCTATGGTGGGCGGAACAGGA
AGTGTGCCGAGCGTTTCGCCCGGGCAGACGGAAACATGTCGTGGGACGAC
ATCGAGAAGGAGCAATTGGGGGGTCAACACTTGCAAGGGACTAAGACAGC
GGCCAATCTCCACAGTCTACTAGAGCGAAAGAGGGTAGTGGGTGATTTTC
CTTTGTTTTCCACAGTGTACCAAATTGCATTTCGAGGGCGACATCCAAGA
ACTTTGGTAAATGACCTGTGA

Coding sequence (CDS) from alignment at scaffold_3:1207538..1209008+

>mRNA_499 ID=mRNA_499|Name=jgi.p|Nanoce1779_2|524140|organism=Nannochloropsis oceanica|type=CDS|length=3222bp|location=Sequence derived from alignment at scaffold_3:1207538..1209008+ (Nannochloropsis oceanica)
ATGGTCCTCAACCCGGCCAAGGGCCAATCGCCTCTCCACAAGGTATCGAT
TGTGGGCAGCGGCAACTTCGGTTCCGCCGTGGCCCGCCTCTTAGGTCGCA
ATGTCCTGCAACACCCCAAACACTTTGAGACGGATATTCGTATGTGGGTC
TTTGAGGAGGAGCTGCCCGACGGTCGGAAGTTGAGCGAGGTCATTAATGC
TGAGCATGAAAACGTCAAGTACTTGCCTGGGGTCCGACTACCCTCCAATG
TACGGGCAATCCCTGATTTGGAAGTCGCGGTAAGAGATGCATCAATCATC
ATTATGGTCGTGCCGCAACAACATTGTGCCACCTTGCTTCCTCGCCTCCG
GTCCTGCATACGGCAAGGTGCCGTAGCCGTCTCTTTGATCAAAGGGTTAG
ACTTCGATGACAATGGTCCCGTGCTTATCACTGACTTAATTCGGAAGGGC
CTGGGCGGAGATGTCGAAGTTTGCGTCTTGATGGGCGCCAACGTGGCCGA
CGAAGTGGCTCGCGATGAGTTTTGCGAGGCCACAGTCGGGTGTCGTGATA
CGACCGGGGCAGGTTTATTGGTACAGCGGCTATTCGATTGCCCGAGATTT
CGAGTGGAGGTGGCGCCTGACCCTATGGGCGTCGAGCTGTGCGGAGCCCT
GAAAAATGTGGTGGCCCTTGGGGCGGGCTTCTGCGATGGGCTGGGCTGGG
GGGGGAATACGAAGGCAGCTGTCATTCGCCGAGGCCTCCTAGAAATGCGT
CGGCTCTGCAAACTCCTTGATCCCCATGTTCGCGATGCCACGTTCTTCGA
GAGCTGTGGTGTGGCCGATCTTATTACCACCTGCTATGGTGGGCGGAACA
GGAAGTGTGCCGAGCGTTTCGCCCGGGCAGACGGAAACATGTCGTGGGAC
GACATCGAGAAGGAGCAATTGGGGGGTCAACACTTGCAAGGGACTAAGAC
AGCGGCCAATCTCCACAGTCTACTAGAGCGAAAGAGGGTAGTGGGTGATT
TTCCTTTGTTTTCCACAGTGTACCAAATTGCATTTCGAGGGCGACATCCA
AGAACTTTGGTAAATGACCTGTGAATGGTCCTCAACCCGGCCAAGGGCCA
ATCGCCTCTCCACAAGGTATCGATTGTGGGCAGCGGCAACTTCGGTTCCG
CCGTGGCCCGCCTCTTAGGTCGCAATGTCCTGCAACACCCCAAACACTTT
GAGACGGATATTCGTATGTGGGTCTTTGAGGAGGAGCTGCCCGACGGTCG
GAAGTTGAGCGAGGTCATTAATGCTGAGCATGAAAACGTCAAGTACTTGC
CTGGGGTCCGACTACCCTCCAATGTACGGGCAATCCCTGATTTGGAAGTC
GCGGTAAGAGATGCATCAATCATCATTATGGTCGTGCCGCAACAACATTG
TGCCACCTTGCTTCCTCGCCTCCGGTCCTGCATACGGCAAGGTGCCGTAG
CCGTCTCTTTGATCAAAGGGTTAGACTTCGATGACAATGGTCCCGTGCTT
ATCACTGACTTAATTCGGAAGGGCCTGGGCGGAGATGTCGAAGTTTGCGT
CTTGATGGGCGCCAACGTGGCCGACGAAGTGGCTCGCGATGAGTTTTGCG
AGGCCACAGTCGGGTGTCGTGATACGACCGGGGCAGGTTTATTGGTACAG
CGGCTATTCGATTGCCCGAGATTTCGAGTGGAGGTGGCGCCTGACCCTAT
GGGCGTCGAGCTGTGCGGAGCCCTGAAAAATGTGGTGGCCCTTGGGGCGG
GCTTCTGCGATGGGCTGGGCTGGGGGGGGAATACGAAGGCAGCTGTCATT
CGCCGAGGCCTCCTAGAAATGCGTCGGCTCTGCAAACTCCTTGATCCCCA
TGTTCGCGATGCCACGTTCTTCGAGAGCTGTGGTGTGGCCGATCTTATTA
CCACCTGCTATGGTGGGCGGAACAGGAAGTGTGCCGAGCGTTTCGCCCGG
GCAGACGGAAACATGTCGTGGGACGACATCGAGAAGGAGCAATTGGGGGG
TCAACACTTGCAAGGGACTAAGACAGCGGCCAATCTCCACAGTCTACTAG
AGCGAAAGAGGGTAGTGGGTGATTTTCCTTTGTTTTCCACAGTGTACCAA
ATTGCATTTCGAGGGCGACATCCAAGAACTTTGGTAAATGACCTGTGAAT
GGTCCTCAACCCGGCCAAGGGCCAATCGCCTCTCCACAAGGTATCGATTG
TGGGCAGCGGCAACTTCGGTTCCGCCGTGGCCCGCCTCTTAGGTCGCAAT
GTCCTGCAACACCCCAAACACTTTGAGACGGATATTCGTATGTGGGTCTT
TGAGGAGGAGCTGCCCGACGGTCGGAAGTTGAGCGAGGTCATTAATGCTG
AGCATGAAAACGTCAAGTACTTGCCTGGGGTCCGACTACCCTCCAATGTA
CGGGCAATCCCTGATTTGGAAGTCGCGGTAAGAGATGCATCAATCATCAT
TATGGTCGTGCCGCAACAACATTGTGCCACCTTGCTTCCTCGCCTCCGGT
CCTGCATACGGCAAGGTGCCGTAGCCGTCTCTTTGATCAAAGGGTTAGAC
TTCGATGACAATGGTCCCGTGCTTATCACTGACTTAATTCGGAAGGGCCT
GGGCGGAGATGTCGAAGTTTGCGTCTTGATGGGCGCCAACGTGGCCGACG
AAGTGGCTCGCGATGAGTTTTGCGAGGCCACAGTCGGGTGTCGTGATACG
ACCGGGGCAGGTTTATTGGTACAGCGGCTATTCGATTGCCCGAGATTTCG
AGTGGAGGTGGCGCCTGACCCTATGGGCGTCGAGCTGTGCGGAGCCCTGA
AAAATGTGGTGGCCCTTGGGGCGGGCTTCTGCGATGGGCTGGGCTGGGGG
GGGAATACGAAGGCAGCTGTCATTCGCCGAGGCCTCCTAGAAATGCGTCG
GCTCTGCAAACTCCTTGATCCCCATGTTCGCGATGCCACGTTCTTCGAGA
GCTGTGGTGTGGCCGATCTTATTACCACCTGCTATGGTGGGCGGAACAGG
AAGTGTGCCGAGCGTTTCGCCCGGGCAGACGGAAACATGTCGTGGGACGA
CATCGAGAAGGAGCAATTGGGGGGTCAACACTTGCAAGGGACTAAGACAG
CGGCCAATCTCCACAGTCTACTAGAGCGAAAGAGGGTAGTGGGTGATTTT
CCTTTGTTTTCCACAGTGTACCAAATTGCATTTCGAGGGCGACATCCAAG
AACTTTGGTAAATGACCTGTGA

Synonyms

Publications