jgi.p|Nanoce1779_2|579463, mRNA_2204 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579463
Unique Name	mRNA_2204
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1871
Alignment location	scaffold_4:1054473..1056462 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579549
Track	FilteredModels2
ProteinId	579463

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:1054473..1056462 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579463	gene_2204	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579463	mRNA_2204-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2204	CDS_2204	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:1054473..1056462+
coding sequence from alignment at scaffold_4:1054473..1056462+

mRNA sequence

>mRNA_2204 ID=mRNA_2204|Name=jgi.p|Nanoce1779_2|579463|organism=Nannochloropsis oceanica|type=mRNA|length=1871bp
CGTGATGTAGTCCTTGAACATTTGCTTGCAGCGTTGGCCCGCGCGTCCCC
AATTAGCTGTAGTAATGACCAGAGTATTGTGTTTGCCTTGTTGGAAGGGA
TGTATCGTCTCCTGCCCCTATACAAAGACGGTTTCTTCATCGTCCGGTAC
CTACGGGCATTAATCCAGGTCTTGACTTTCACGCCCTTGGAAGAAGGAGA
TGATGCCGTGCGTGTGGTAGCCCTCCGCACCCTCCTCCTCGTCCTCGGGC
AATGCCAAGTTGTGATCCATCAACATGCGCTCGAGACGCTTGCGCAAGTG
CTGCGACTGTATATCCTCTTGTTTCGACAAGGAAATAATCAGACGGAGGG
GGACAAGGCAAGCATGGCGTTATGTCGGGAGGTGGCGGGAATGCTAAGGG
TGGGGTGTAAGGGGCAGGCACGACAAGGGCTCGAGGCCTTTGTCCAGGGA
CTGAGAGAGGAAGGGGGCTACTGCTTGGAGCTAAGCGGGATCTGGCCAAC
TGAAAGTAGAAGTGGAATCGTGAAGGAATTCCCCGAGAATAAAAAAGATA
AATGAAATGAACGTGTACATTTGGAGGAGGTTTTGTGTTCGTCGTTGGGA
AGGCAACGTCACATGTGGTGGCCATGTGCTTTCGGACTTTTCTTTGCCAT
CTTTGTTGTACGACACGAGCGAACAACCTCTCCGCTCTTGCCAACACAGG
CGCACGTAACAGGACAAGCAGTAAAAGAAGACATCCCGGCTTCTGGCTTG
CGTCCATAGACAATGCCCAAATTCCCCAAGGAACGGCAACGACAGGCCAC
GGCCGGGCAAGGCCCTGTGCACCGCACTCTTATCTCGGCCAACACCTCGC
TGGGGCAGCATTTTTTGAAAAACCCCATGGTCGTGCAAGGCATCGTGGAT
AAGGCCTCCATCCGGAGCACAGACATCGTCATGGAAGTCGGGCCCGGTAC
AGGTAACCTGACGGTGAAGCTCTTGGAGCGAGCCAAGAAAGTAATTGCCG
TCGAATTCGACACACGGATGGTCCGCGAGGTTCTGAAGCGAGTCGAGGGC
ACCGAGCATGGCAAAAACCTTCAAGTCATCCAAGGTGACGTTCTCAAGGT
CGCCCTCCCATTCTTCGACGTCTGTGTCGCTAACATCCCGTATCAGATTT
CCTCCCCCCTCCTTTTTAAGCTCCTCGCGCACCGCCCCATGTTCCGGTGT
GCCGTCATCATGCTCCAAGAAGAATTTGCGCAGCGTCTCACGGCCAAGCC
CGGTGACGAGCTCTACTGTCGCCTCTCCGTCAACACTCAACTACTCGCAA
AAGTCGACCAACTCATGAAAGTGGGTCGTAACAATTTCCGCCCTCCTCCC
AAGGTTGACTCGAGGGTGGTTCGTATTGAGTTGCGGAATCCACCGCCGCC
GGTAAATTTCAGTGAGTGGGATGGGTTGGTGCGCCTTGTGTTCAATAGGA
AGCACAAGACGTTGCACGCAGTCATGACGACGAAAAGTGTCTTGACTGTT
CTGGAGAGGAATTATAAGACTTACGTGGCGTTGCACGGAAAGGGAGAAAG
GGGGGTGGCGTTGCCGCTGCCTGTGGGGATGGAGGTGGAGAAGGAGGGAG
GAAGGAAGGAGGAAGGAAAGCAGTATGAGGAGATCCGAACACTAGTTGAG
GAGGTTGTGGCGTTGCCGGCCTTCGAAGGAAAGAGAGCTGCGAAGATGGA
TTTGGACGACTTTTTGGCCTTGCTGGCTGAATTCAATAGTAGGGGGGTGC
ATTTCTCGTCATAGAGAGAGAGGGGCGGAAAGGCGGCGCGTTGATATTTG
TTGTATATGGAAATTGATCGGTAAGAAAGTAAGAAAGAGAAAAAAAATTG
ACTCAAGAGCTACGAGCTGCC

protein sequence of jgi.p|Nanoce1779_2|579463

>mRNA_2204-protein ID=mRNA_2204-protein|Name=jgi.p|Nanoce1779_2|579463|organism=Nannochloropsis oceanica|type=polypeptide|length=334bp
MPKFPKERQRQATAGQGPVHRTLISANTSLGQHFLKNPMVVQGIVDKASI
RSTDIVMEVGPGTGNLTVKLLERAKKVIAVEFDTRMVREVLKRVEGTEHG
KNLQVIQGDVLKVALPFFDVCVANIPYQISSPLLFKLLAHRPMFRCAVIM
LQEEFAQRLTAKPGDELYCRLSVNTQLLAKVDQLMKVGRNNFRPPPKVDS
RVVRIELRNPPPPVNFSEWDGLVRLVFNRKHKTLHAVMTTKSVLTVLERN
YKTYVALHGKGERGVALPLPVGMEVEKEGGRKEEGKQYEEIRTLVEEVVA
LPAFEGKRAAKMDLDDFLALLAEFNSRGVHFSS*

mRNA from alignment at scaffold_4:1054473..1056462+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2204 ID=mRNA_2204|Name=jgi.p|Nanoce1779_2|579463|organism=Nannochloropsis oceanica|type=mRNA|length=1990bp|location=Sequence derived from alignment at scaffold_4:1054473..1056462+ (Nannochloropsis oceanica)
CGTGATGTAGTCCTTGAACATTTGCTTGCAGCGTTGGCCCGCGCGTCCCC
AATTAGCTGTAGTAATGACCAGAGTATTGTGTTTGCCTTGTTGGAAGGGA
TGTATCGTCTCCTGCCCCTATACAAAGACGGTTTCTTCATCGTCCGGTAC
CTACGGGCATTAATCCAGGTCTTGACTTTCACGCCCTTGGAAGAAGGAGA
TGATGCCGTGCGTGTGGTAGCCCTCCGCACCCTCCTCCTCGTCCTCGGGC
AATGCCAAGTTGTGATCCATCAACATGCGCTCGAGACGCTTGCGCAAGTG
CTGCGACTGTATATCCTCTTGTTTCGACAAGGAAATAATCAGACGGAGGG
GGACAAGGCAAGCATGGCGTTATGTCGGGAGGTGGCGGGAATGCTAAGGG
TGGGGTGTAAGGGGCAGGCACGACAAGGGCTCGAGGCCTTTGTCCAGGGA
CTGAGAGAGGAAGGGGGCTACTGCTTGGAGCTAAGCGGGATCTGGCCAAC
TGAAAGTAGAAGTGGAATCGTGAAGGAATTCCCCGAGAATAAAAAAGATA
AATGAAATGAACGTGTACATTTGGAGGAGGTTTTGTGTTCGTCGTTGGGA
AGGCAACGTCACATGTGGTGGCCATGTGCTTTCGGACTTTTCTTTGCCAT
CTTTGTTGTACGACACGAGCGAACAACCTCTCCGCTCTTGCCAACACAGG
CGCACGTAACAGGACAAGCAGTAAAAGAAGACATCCCGGCTTCTGGCTTG
CGTCCATAGACAATGTAAGTCCTTTCTTCTATTCACCTCATAATCATCAT
TATTGTCATCAAAGTATCTTTGCTTTCAGCCTCCGACACACCCTCGCACT
CTCTCTCCACCCAATCATCACGCGCACACACAGGCCCAAATTCCCCAAGG
AACGGCAACGACAGGCCACGGCCGGGCAAGGCCCTGTGCACCGCACTCTT
ATCTCGGCCAACACCTCGCTGGGGCAGCATTTTTTGAAAAACCCCATGGT
CGTGCAAGGCATCGTGGATAAGGCCTCCATCCGGAGCACAGACATCGTCA
TGGAAGTCGGGCCCGGTACAGGTAACCTGACGGTGAAGCTCTTGGAGCGA
GCCAAGAAAGTAATTGCCGTCGAATTCGACACACGGATGGTCCGCGAGGT
TCTGAAGCGAGTCGAGGGCACCGAGCATGGCAAAAACCTTCAAGTCATCC
AAGGTGACGTTCTCAAGGTCGCCCTCCCATTCTTCGACGTCTGTGTCGCT
AACATCCCGTATCAGATTTCCTCCCCCCTCCTTTTTAAGCTCCTCGCGCA
CCGCCCCATGTTCCGGTGTGCCGTCATCATGCTCCAAGAAGAATTTGCGC
AGCGTCTCACGGCCAAGCCCGGTGACGAGCTCTACTGTCGCCTCTCCGTC
AACACTCAACTACTCGCAAAAGTCGACCAACTCATGAAAGTGGGTCGTAA
CAATTTCCGCCCTCCTCCCAAGGTTGACTCGAGGGTGGTTCGTATTGAGT
TGCGGAATCCACCGCCGCCGGTAAATTTCAGTGAGTGGGATGGGTTGGTG
CGCCTTGTGTTCAATAGGAAGCACAAGACGTTGCACGCAGTCATGACGAC
GAAAAGTGTCTTGACTGTTCTGGAGAGGAATTATAAGACTTACGTGGCGT
TGCACGGAAAGGGAGAAAGGGGGGTGGCGTTGCCGCTGCCTGTGGGGATG
GAGGTGGAGAAGGAGGGAGGAAGGAAGGAGGAAGGAAAGCAGTATGAGGA
GATCCGAACACTAGTTGAGGAGGTTGTGGCGTTGCCGGCCTTCGAAGGAA
AGAGAGCTGCGAAGATGGATTTGGACGACTTTTTGGCCTTGCTGGCTGAA
TTCAATAGTAGGGGGGTGCATTTCTCGTCATAGAGAGAGAGGGGCGGAAA
GGCGGCGCGTTGATATTTGTTGTATATGGAAATTGATCGGTAAGAAAGTA
AGAAAGAGAAAAAAAATTGACTCAAGAGCTACGAGCTGCC

Coding sequence (CDS) from alignment at scaffold_4:1054473..1056462+

>mRNA_2204 ID=mRNA_2204|Name=jgi.p|Nanoce1779_2|579463|organism=Nannochloropsis oceanica|type=CDS|length=2004bp|location=Sequence derived from alignment at scaffold_4:1054473..1056462+ (Nannochloropsis oceanica)
ATGCCCAAATTCCCCAAGGAACGGCAACGACAGGCCACGGCCGGGCAAGG
CCCTGTGCACCGCACTCTTATCTCGGCCAACACCTCGCTGGGGCAGCATT
TTTTGAAAAACCCCATGGTCGTGCAAGGCATCGTGGATAAGGCCTCCATC
CGGAGCACAGACATCGTCATGGAAGTCGGGCCCGGTACAGGTAACCTGAC
GGTGAAGCTCTTGGAGCGAGCCAAGAAAGTAATTGCCGTCGAATTCGACA
CACGGATGGTCCGCGAGGTTCTGAAGCGAGTCGAGGGCACCGAGCATGGC
AAAAACCTTCAAGTCATCCAAGGTGACGTTCTCAAGGTCGCCCTCCCATT
CTTCGACGTCTGTGTCGCTAACATCCCGTATCAGATTTCCTCCCCCCTCC
TTTTTAAGCTCCTCGCGCACCGCCCCATGTTCCGGTGTGCCGTCATCATG
CTCCAAGAAGAATTTGCGCAGCGTCTCACGGCCAAGCCCGGTGACGAGCT
CTACTGTCGCCTCTCCGTCAACACTCAACTACTCGCAAAAGTCGACCAAC
TCATGAAAGTGGGTCGTAACAATTTCCGCCCTCCTCCCAAGGTTGACTCG
AGGGTGGTTCGTATTGAGTTGCGGAATCCACCGCCGCCGGTAAATTTCAG
TGAGTGGGATGGGTTGGTGCGCCTTGTGTTCAATAGGAAGCACAAGACGT
TGCACGCAGTCATGACGACGAAAAGTGTCTTGACTGTTCTGGAGAGGAAT
TATAAGACTTACGTGGCGTTGCACGGAAAGGGAGAAAGGGGGGTGGCGTT
GCCGCTGCCTGTGGGGATGGAGGTGGAGAAGGAGGGAGGAAGGAAGGAGG
AAGGAAAGCAGTATGAGGAGATCCGAACACTAGTTGAGGAGGTTGTGGCG
TTGCCGGCCTTCGAAGGAAAGAGAGCTGCGAAGATGGATTTGGACGACTT
TTTGGCCTTGCTGGCTGAATTCAATAGTAGGGGGGTGCATTTCTCGTCAT
AGATGCCCAAATTCCCCAAGGAACGGCAACGACAGGCCACGGCCGGGCAA
GGCCCTGTGCACCGCACTCTTATCTCGGCCAACACCTCGCTGGGGCAGCA
TTTTTTGAAAAACCCCATGGTCGTGCAAGGCATCGTGGATAAGGCCTCCA
TCCGGAGCACAGACATCGTCATGGAAGTCGGGCCCGGTACAGGTAACCTG
ACGGTGAAGCTCTTGGAGCGAGCCAAGAAAGTAATTGCCGTCGAATTCGA
CACACGGATGGTCCGCGAGGTTCTGAAGCGAGTCGAGGGCACCGAGCATG
GCAAAAACCTTCAAGTCATCCAAGGTGACGTTCTCAAGGTCGCCCTCCCA
TTCTTCGACGTCTGTGTCGCTAACATCCCGTATCAGATTTCCTCCCCCCT
CCTTTTTAAGCTCCTCGCGCACCGCCCCATGTTCCGGTGTGCCGTCATCA
TGCTCCAAGAAGAATTTGCGCAGCGTCTCACGGCCAAGCCCGGTGACGAG
CTCTACTGTCGCCTCTCCGTCAACACTCAACTACTCGCAAAAGTCGACCA
ACTCATGAAAGTGGGTCGTAACAATTTCCGCCCTCCTCCCAAGGTTGACT
CGAGGGTGGTTCGTATTGAGTTGCGGAATCCACCGCCGCCGGTAAATTTC
AGTGAGTGGGATGGGTTGGTGCGCCTTGTGTTCAATAGGAAGCACAAGAC
GTTGCACGCAGTCATGACGACGAAAAGTGTCTTGACTGTTCTGGAGAGGA
ATTATAAGACTTACGTGGCGTTGCACGGAAAGGGAGAAAGGGGGGTGGCG
TTGCCGCTGCCTGTGGGGATGGAGGTGGAGAAGGAGGGAGGAAGGAAGGA
GGAAGGAAAGCAGTATGAGGAGATCCGAACACTAGTTGAGGAGGTTGTGG
CGTTGCCGGCCTTCGAAGGAAAGAGAGCTGCGAAGATGGATTTGGACGAC
TTTTTGGCCTTGCTGGCTGAATTCAATAGTAGGGGGGTGCATTTCTCGTC
ATAG

Synonyms

Publications