jgi.p|Nanoce1779_2|607926, mRNA_9052 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|607926
Unique Name	mRNA_9052
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1726
Alignment location	scaffold_40:15511..17399 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	608012
Track	FilteredModels2
ProteinId	607926

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_40	supercontig	scaffold_40:15511..17399 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|607926	gene_9052	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|607926	mRNA_9052-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9052	CDS_9052	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_40:15511..17399+
coding sequence from alignment at scaffold_40:15511..17399+

mRNA sequence

>mRNA_9052 ID=mRNA_9052|Name=jgi.p|Nanoce1779_2|607926|organism=Nannochloropsis oceanica|type=mRNA|length=1726bp
ACAGAAATCGACCTCGAAACTATTTTTTTGCCGCCTCTGCCTCGTTAGGA
CGAACCCCTCTGCCACGCCGCGGCCCCGTCCTCTTCTCGAACGACGTTGT
GGCACACAAAGCACAAGTTATCGCAAAATGGTGAATCTTCTGTGTGCCCT
GATTTTCCTTTATGGGATGCAGTTCGTCCTAGGCTTCGTGACAGTCTGTC
CCACAGCATCTGCGGCACTTCAGCTGCGGCGTCGCCCCCCCGTTCCCACC
ACGACGACAACAATTAAAACCACTACCACGACGAGCATCACCTTCGCCGC
GGGCACTGAAGGTGAAGCAGAATCCAACACCCACACTCGACCATGCGTGA
ACCGAAAGGGTGCACTGCGGCGATACGTAAGGGTAACATTGGGTTTGACC
GCCGGGGCCTCCTGGACGGGATTGACTGTTGGAAACGCGGGGGCTGCACT
TCCGAGCGCACAAGCTTACACATCAACCAGCACGGCGGCAGTTGGCACGG
TCACGCACAAATCATTGCAGGAATTGCAATTTGAGATGCTAAAAAGAGGG
CTCGATTTGACGCACGCTTTTCGGTACGAGGAGGCGGAGGACGTGTACAC
TGAATTGATTGGCCTGTTTGATAGTGACTATGCCGCCTTGAATGACCGGG
ACAAGCAGCTTGTGGCGAAGGCATTTTCTAACAGAGGTAACGTCCGCTGC
TCGTTGTCACGGGTGAGCGAGGCCTTGTTGGACTACAGCAGAAGCATCGA
GCTCGCTCCAAGCGCCGAGTATTATACGAACCGGGGACTAGCCTTCGAGA
TGATGGCGGACAGCCTCCTCCCGGATCGCGAGTCCGACGCATTCCAGTTT
TATGAGACTGCCATTGCAGACTATGACCATGCCCTTGTCCTAGACCCCGA
AAACCACCGTCTTTACCTGAATGCGGGAGACGTTCTGACTAGGACCCGGC
AGCATGACATGGCCTTGGAGTATTACCGCCGAGCCCTGGTGCTCTTACCA
GCTAGCCCCGCAACTCGCGGGAAGGTCGCTCTCTTGGAAGTGGAAAATGG
CAACGTCGCTAGAGGCATCTTCATGCTAGAGACCATCACACAGAGGAACC
CAGACTACGCAGAAATGCTCCTGGCCATCGCGGCCCTCGATTGGACGCTC
GGCAGGTTTGTCGTTGGAATTGATTACTACCGTGAAGCCATTGCGCGGGA
CCCCCGCTTACTGGATTCGGACTACTTGAAAATGGACTGTCATTGGCCGC
CTACCATGCTCAAGATGGTGGGGAAGCTGAGGGAGGCGGGGACGATGGAT
GGGCTGCGGTCGACGGCAGTTTCTTGGTTCGATAGCCGGGGGAATCTGAT
TTAATTTGTCCCGAAATATTCCTGTCTTGAGGTAGGAAAGTGATTACTTG
AATAACGGGGAAGGAGATGATCCGAAAGTGTAAAAACGGTGTCAAGGAAG
GACGAGAGGCCAGCAGCAGCAGCAGCAGCAGCAGCAGAGATGGAGGTAAG
TGTACAAATATCAAGAAGCGGAAAGGCAAGGCAGTAGCCGGTGCTTTTTC
TATGCGCCGGGCACCATCTTTCCGCCTGTTCTCTTTCTTTTTTAGTTCCT
CTCTTCTAAAAGCAACAAGAAGGCAGGGGCAATACCAGCACCAGCACAAG
GTGCAGCAGGACGGCGATAAAACATGTACATAGCAAGCAGCACCGGGGAA
GCCAAGTGAGTATAAAGGCAGTCCAA

protein sequence of jgi.p|Nanoce1779_2|607926

>mRNA_9052-protein ID=mRNA_9052-protein|Name=jgi.p|Nanoce1779_2|607926|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp
MVNLLCALIFLYGMQFVLGFVTVCPTASAALQLRRRPPVPTTTTTIKTTT
TTSITFAAGTEGEAESNTHTRPCVNRKGALRRYVRVTLGLTAGASWTGLT
VGNAGAALPSAQAYTSTSTAAVGTVTHKSLQELQFEMLKRGLDLTHAFRY
EEAEDVYTELIGLFDSDYAALNDRDKQLVAKAFSNRGNVRCSLSRVSEAL
LDYSRSIELAPSAEYYTNRGLAFEMMADSLLPDRESDAFQFYETAIADYD
HALVLDPENHRLYLNAGDVLTRTRQHDMALEYYRRALVLLPASPATRGKV
ALLEVENGNVARGIFMLETITQRNPDYAEMLLAIAALDWTLGRFVVGIDY
YREAIARDPRLLDSDYLKMDCHWPPTMLKMVGKLREAGTMDGLRSTAVSW
FDSRGNLI*

mRNA from alignment at scaffold_40:15511..17399+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9052 ID=mRNA_9052|Name=jgi.p|Nanoce1779_2|607926|organism=Nannochloropsis oceanica|type=mRNA|length=1889bp|location=Sequence derived from alignment at scaffold_40:15511..17399+ (Nannochloropsis oceanica)
ACAGAAATCGACCTCGAAACTATTTTTTTGCCGCCTCTGCCTCGTTAGGA
CGAACCCCTCTGCCACGCCGCGGCCCCGTCCTCTTCTCGAACGACGTTGT
GGCACACAAAGCACAAGTTATCGCAAAATGGTGAATCTTCTGTGTGCCCT
GATTTTCCTTTATGGGATGCAGTTCGTCCTAGGCTTCGTGACAGTCTGTC
CCACAGCATCTGCGGCACTTCAGCTGCGGCGTCGCCCCCCCGTTCCCACC
ACGACGACAACAATTAAAACCACTACCACGACGAGCATCACCTTCGCCGC
GGGCACTGAAGGTGAAGCAGAATCCAACACCCACACTCGACCATGCGTGA
ACCGAAAGGGTGCACTGCGGCGATACGTAAGGGTAACATTGGGTTTGACC
GCCGGGGCCTCCTGGACGGGATTGACTGTTGGAAACGCGGGGGCTGCACT
TCCGAGCGCACAAGCTTACACATCAACCAGCACGGCGGCAGTTGGCACGG
TCACGCACAAATCATTGCAGGAATTGCAATTTGAGATGCTAAAAAGAGGG
CTCGATTTGACGCACGCTTTTCGGTACGAGGAGGCGGAGGACGTGTACAC
TGAATTGATTGGCCTGTTTGATAGTGACTATGCCGCCTTGAATGACCGGG
ACAAGCAGCTTGTGGCGAAGTAAGTGATTGTTCTGGGAGGAGGGAGGGAC
GAACAAGGGGGAAGTAATGATAGGGACCAACTTAGTGATAATCCTTCAAG
CAACTGTCCTTGGAGGGAGATCCACCGTTCGTTGCCTTTGCTCCTCGCTG
CCTCACGCTACCTGTAAACACAATTCTCACAGGGCATTTTCTAACAGAGG
TAACGTCCGCTGCTCGTTGTCACGGGTGAGCGAGGCCTTGTTGGACTACA
GCAGAAGCATCGAGCTCGCTCCAAGCGCCGAGTATTATACGAACCGGGGA
CTAGCCTTCGAGATGATGGCGGACAGCCTCCTCCCGGATCGCGAGTCCGA
CGCATTCCAGTTTTATGAGACTGCCATTGCAGACTATGACCATGCCCTTG
TCCTAGACCCCGAAAACCACCGTCTTTACCTGAATGCGGGAGACGTTCTG
ACTAGGACCCGGCAGCATGACATGGCCTTGGAGTATTACCGCCGAGCCCT
GGTGCTCTTACCAGCTAGCCCCGCAACTCGCGGGAAGGTCGCTCTCTTGG
AAGTGGAAAATGGCAACGTCGCTAGAGGCATCTTCATGCTAGAGACCATC
ACACAGAGGAACCCAGACTACGCAGAAATGCTCCTGGCCATCGCGGCCCT
CGATTGGACGCTCGGCAGGTTTGTCGTTGGAATTGATTACTACCGTGAAG
CCATTGCGCGGGACCCCCGCTTACTGGATTCGGACTACTTGAAAATGGAC
TGTCATTGGCCGCCTACCATGCTCAAGATGGTGGGGAAGCTGAGGGAGGC
GGGGACGATGGATGGGCTGCGGTCGACGGCAGTTTCTTGGTTCGATAGCC
GGGGGAATCTGATTTAATTTGTCCCGAAATATTCCTGTCTTGAGGTAGGA
AAGTGATTACTTGAATAACGGGGAAGGAGATGATCCGAAAGTGTAAAAAC
GGTGTCAAGGAAGGACGAGAGGCCAGCAGCAGCAGCAGCAGCAGCAGCAG
AGATGGAGGTAAGTGTACAAATATCAAGAAGCGGAAAGGCAAGGCAGTAG
CCGGTGCTTTTTCTATGCGCCGGGCACCATCTTTCCGCCTGTTCTCTTTC
TTTTTTAGTTCCTCTCTTCTAAAAGCAACAAGAAGGCAGGGGCAATACCA
GCACCAGCACAAGGTGCAGCAGGACGGCGATAAAACATGTACATAGCAAG
CAGCACCGGGGAAGCCAAGTGAGTATAAAGGCAGTCCAA

Coding sequence (CDS) from alignment at scaffold_40:15511..17399+

>mRNA_9052 ID=mRNA_9052|Name=jgi.p|Nanoce1779_2|607926|organism=Nannochloropsis oceanica|type=CDS|length=2454bp|location=Sequence derived from alignment at scaffold_40:15511..17399+ (Nannochloropsis oceanica)
ATGGTGAATCTTCTGTGTGCCCTGATTTTCCTTTATGGGATGCAGTTCGT
CCTAGGCTTCGTGACAGTCTGTCCCACAGCATCTGCGGCACTTCAGCTGC
GGCGTCGCCCCCCCGTTCCCACCACGACGACAACAATTAAAACCACTACC
ACGACGAGCATCACCTTCGCCGCGGGCACTGAAGGTGAAGCAGAATCCAA
CACCCACACTCGACCATGCGTGAACCGAAAGGGTGCACTGCGGCGATACG
TAAGGGTAACATTGGGTTTGACCGCCGGGGCCTCCTGGACGGGATTGACT
GTTGGAAACGCGGGGGCTGCACTTCCGAGCGCACAAGCTTACACATCAAC
CAGCACGGCGGCAGTTGGCACGGTCACGCACAAATCATTGCAGGAATTGC
AATTTGAGATGCTAAAAAGAGGGCTCGATTTGACGCACGCTTTTCGGTAC
GAGGAGGCGGAGGACGTGTACACTGAATTGATTGGCCTGTTTGATAGTGA
CTATGCCGCCTTGAATGACCGGGACAAGCAGCTTGTGGCGAAGGCATTTT
CTAACAGAGGTAACGTCCGCTGCTCGTTGTCACGGGTGAGCGAGGCCTTG
TTGGACTACAGCAGAAGCATCGAGCTCGCTCCAAGCGCCGAGTATTATAC
GAACCGGGGACTAGCCTTCGAGATGATGGCGGACAGCCTCCTCCCGGATC
GCGAGTCCGACGCATTCCAGTTTTATGAGACTGCCATTGCAGACTATGAC
CATGCCCTTGTCCTAGACCCCGAAAACCACCGTCTTTACCTGAATGCGGG
AGACGTTCTGACTAGGACCCGGCAGCATGACATGGCCTTGGAGTATTACC
GCCGAGCCCTGGTGCTCTTACCAGCTAGCCCCGCAACTCGCGGGAAGGTC
GCTCTCTTGGAAGTGGAAAATGGCAACGTCGCTAGAGGCATCTTCATGCT
AGAGACCATCACACAGAGGAACCCAGACTACGCAGAAATGCTCCTGGCCA
TCGCGGCCCTCGATTGGACGCTCGGCAGGTTTGTCGTTGGAATTGATTAC
TACCGTGAAGCCATTGCGCGGGACCCCCGCTTACTGGATTCGGACTACTT
GAAAATGGACTGTCATTGGCCGCCTACCATGCTCAAGATGGTGGGGAAGC
TGAGGGAGGCGGGGACGATGGATGGGCTGCGGTCGACGGCAGTTTCTTGG
TTCGATAGCCGGGGGAATCTGATTTAAATGGTGAATCTTCTGTGTGCCCT
GATTTTCCTTTATGGGATGCAGTTCGTCCTAGGCTTCGTGACAGTCTGTC
CCACAGCATCTGCGGCACTTCAGCTGCGGCGTCGCCCCCCCGTTCCCACC
ACGACGACAACAATTAAAACCACTACCACGACGAGCATCACCTTCGCCGC
GGGCACTGAAGGTGAAGCAGAATCCAACACCCACACTCGACCATGCGTGA
ACCGAAAGGGTGCACTGCGGCGATACGTAAGGGTAACATTGGGTTTGACC
GCCGGGGCCTCCTGGACGGGATTGACTGTTGGAAACGCGGGGGCTGCACT
TCCGAGCGCACAAGCTTACACATCAACCAGCACGGCGGCAGTTGGCACGG
TCACGCACAAATCATTGCAGGAATTGCAATTTGAGATGCTAAAAAGAGGG
CTCGATTTGACGCACGCTTTTCGGTACGAGGAGGCGGAGGACGTGTACAC
TGAATTGATTGGCCTGTTTGATAGTGACTATGCCGCCTTGAATGACCGGG
ACAAGCAGCTTGTGGCGAAGGCATTTTCTAACAGAGGTAACGTCCGCTGC
TCGTTGTCACGGGTGAGCGAGGCCTTGTTGGACTACAGCAGAAGCATCGA
GCTCGCTCCAAGCGCCGAGTATTATACGAACCGGGGACTAGCCTTCGAGA
TGATGGCGGACAGCCTCCTCCCGGATCGCGAGTCCGACGCATTCCAGTTT
TATGAGACTGCCATTGCAGACTATGACCATGCCCTTGTCCTAGACCCCGA
AAACCACCGTCTTTACCTGAATGCGGGAGACGTTCTGACTAGGACCCGGC
AGCATGACATGGCCTTGGAGTATTACCGCCGAGCCCTGGTGCTCTTACCA
GCTAGCCCCGCAACTCGCGGGAAGGTCGCTCTCTTGGAAGTGGAAAATGG
CAACGTCGCTAGAGGCATCTTCATGCTAGAGACCATCACACAGAGGAACC
CAGACTACGCAGAAATGCTCCTGGCCATCGCGGCCCTCGATTGGACGCTC
GGCAGGTTTGTCGTTGGAATTGATTACTACCGTGAAGCCATTGCGCGGGA
CCCCCGCTTACTGGATTCGGACTACTTGAAAATGGACTGTCATTGGCCGC
CTACCATGCTCAAGATGGTGGGGAAGCTGAGGGAGGCGGGGACGATGGAT
GGGCTGCGGTCGACGGCAGTTTCTTGGTTCGATAGCCGGGGGAATCTGAT
TTAA

Synonyms

Publications