jgi.p|Nanoce1779_2|608037, mRNA_9080 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|608037
Unique NamemRNA_9080
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1669
Alignment locationscaffold_40:76745..78413 +

Link to JBrowse

Properties
Property NameValue
TranscriptId608123
TrackFilteredModels2
ProteinId608037
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_40supercontigscaffold_40:76745..78413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608037gene_9080Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608037mRNA_9080-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9080CDS_9080Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9080 ID=mRNA_9080|Name=jgi.p|Nanoce1779_2|608037|organism=Nannochloropsis oceanica|type=mRNA|length=1669bp
CCCTCTTTCACCTTCCTCCCACAGTAAGCCTTCTTTGTCCTCTATCAACG
GTACAGGAAAAAGCAGCAGCAGCAGCAGCAGCAGTGGCAGCAAGCGTCCC
CGCGATGGGCAGCATGGTCAGCAACCCCCCCGTCACCTCAGCGCCACAGC
CAGCAGCAGCAGCAAAACCGTGGAACCCCACGCCTACAAAGACAAGCGCT
CACGGGCTCACCCTCCATCATCCTCCGCTCCCAAACACCCACCCGTCCAA
CTCGCTCGCTGGCGGGACGCTTTACGGAGCGACTTTATTGTCGACATGCA
ATTTCAAGTTCCCCTCCCCGAGGTTCCCCTCGGGCCCCGCTTCCTCACTC
TCGACAGCCTGGCGAACCTCGGCGATTTAATCTCTTACAAAGACTCGGTG
CCCTTGGCTTCCCAGTTCAAATATGCCTTGCACTCGGACATCTCCCTTGG
GATAGAAATAGATACAATCGACAGGAAGAAGTGGCAGCCACCCCCCGCTT
CCTCCCTCCCGCCTTCGCTTCACCCCGATGACATGGCATTGCTAGAATGG
GACTTGTTCAAGGGCAAGCAGAAGAGGGCGGGAGAGGATGGGGAGGAGGC
AGGGAGCGAAGCAGGAAGGGAGGCAGGGGGGGAGAGAGAGGAGGATACGG
GAGGGGTGGCGACTGCAGGGCAGGTGGCAGCGCCGTGGATGTTGAGGCCG
AGGTATGAGACGACGGTGACTTACGATTGTCAGGAGGAAAGGGAGGGAGG
GAGACATGGGAGAAGGAAGAACCCTCCGAAAGCAGAGGGGGGGGAGGACG
AGGAAGAGGAGGAGGAGCAAGGGGGAGCGGAGGTATTCGATGAGAGTCGA
CAAGAAGGATGGGAGGCTGCGATCGCGCGTACTTTTGATGAGGCAAGGCG
AGGGGAGGGATTGGCGCCACGGGAGGAGGGAGGAAAGGGTCCGCTGTGGG
TCGCGGAGATAGTCCCTGATCTCGAGCAGTGGGCGAATGAGCTGGTGGTG
GTTCATTTTGGCAACGAGTTGAGAGGGAGGGAGGAGGAGGCGGCCATGGA
GGCGCCCTTGTTCGTTTTGGAAGGAGGAAGGGAGGAAGGGTTAGTGCACG
GGACGACGGTCAAGGCGGGCTACATGCGCGGCAGGGGGCATGTGACGGCA
GAGGCGGCGAGAGTTGGAGGGGGGGTGGTGAGCAAGGCCTTTGAACCTGC
GCGGTATTATCAGTTGGAGGTCACTAGGACAGACGGAGGAGGAGGAGAAG
CAGCACCTGTTGAGGGTGATCAGCAGCAGCAGCAGTATCTGTTATTATTG
GTACAGCCGGAGACGGGTGTGGTGTCTATGTGTCCGACTGTGGCGAACGT
GAAGGTTAAGAAAGTGGATAGGGCAGCGTCAGGGAAGCCGGCGAGAGGGG
TGCAATTGGTTCATCGGCCGCTGGGGGAGGAAGAGGCGATGGGAAGGGTG
ATGAAGTTGATGAAGGCGGGGTTGGAAGAGGAGGAGGCGGTCGAATACTT
GAAGTGAAGGGAGGTGGAGGGAAGGAGGGGAGGAAGACTAGCGGACCGGG
TTGCAAATGAGGAGATTTTTCTAAGTAGCTTATGACATGGAAGAGAGAGA
GGATGATGGGGATAAGGCGACAAAATCAAGAATTTAGAGAGGACAAACAA
ATAATTGCATTTTCGCTCA
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protein sequence of jgi.p|Nanoce1779_2|608037

>mRNA_9080-protein ID=mRNA_9080-protein|Name=jgi.p|Nanoce1779_2|608037|organism=Nannochloropsis oceanica|type=polypeptide|length=404bp
MQFQVPLPEVPLGPRFLTLDSLANLGDLISYKDSVPLASQFKYALHSDIS
LGIEIDTIDRKKWQPPPASSLPPSLHPDDMALLEWDLFKGKQKRAGEDGE
EAGSEAGREAGGEREEDTGGVATAGQVAAPWMLRPRYETTVTYDCQEERE
GGRHGRRKNPPKAEGGEDEEEEEEQGGAEVFDESRQEGWEAAIARTFDEA
RRGEGLAPREEGGKGPLWVAEIVPDLEQWANELVVVHFGNELRGREEEAA
MEAPLFVLEGGREEGLVHGTTVKAGYMRGRGHVTAEAARVGGGVVSKAFE
PARYYQLEVTRTDGGGGEAAPVEGDQQQQQYLLLLVQPETGVVSMCPTVA
NVKVKKVDRAASGKPARGVQLVHRPLGEEEAMGRVMKLMKAGLEEEEAVE
YLK*
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mRNA from alignment at scaffold_40:76745..78413+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9080 ID=mRNA_9080|Name=jgi.p|Nanoce1779_2|608037|organism=Nannochloropsis oceanica|type=mRNA|length=1669bp|location=Sequence derived from alignment at scaffold_40:76745..78413+ (Nannochloropsis oceanica)
CCCTCTTTCACCTTCCTCCCACAGTAAGCCTTCTTTGTCCTCTATCAACG GTACAGGAAAAAGCAGCAGCAGCAGCAGCAGCAGTGGCAGCAAGCGTCCC CGCGATGGGCAGCATGGTCAGCAACCCCCCCGTCACCTCAGCGCCACAGC CAGCAGCAGCAGCAAAACCGTGGAACCCCACGCCTACAAAGACAAGCGCT CACGGGCTCACCCTCCATCATCCTCCGCTCCCAAACACCCACCCGTCCAA CTCGCTCGCTGGCGGGACGCTTTACGGAGCGACTTTATTGTCGACATGCA ATTTCAAGTTCCCCTCCCCGAGGTTCCCCTCGGGCCCCGCTTCCTCACTC TCGACAGCCTGGCGAACCTCGGCGATTTAATCTCTTACAAAGACTCGGTG CCCTTGGCTTCCCAGTTCAAATATGCCTTGCACTCGGACATCTCCCTTGG GATAGAAATAGATACAATCGACAGGAAGAAGTGGCAGCCACCCCCCGCTT CCTCCCTCCCGCCTTCGCTTCACCCCGATGACATGGCATTGCTAGAATGG GACTTGTTCAAGGGCAAGCAGAAGAGGGCGGGAGAGGATGGGGAGGAGGC AGGGAGCGAAGCAGGAAGGGAGGCAGGGGGGGAGAGAGAGGAGGATACGG GAGGGGTGGCGACTGCAGGGCAGGTGGCAGCGCCGTGGATGTTGAGGCCG AGGTATGAGACGACGGTGACTTACGATTGTCAGGAGGAAAGGGAGGGAGG GAGACATGGGAGAAGGAAGAACCCTCCGAAAGCAGAGGGGGGGGAGGACG AGGAAGAGGAGGAGGAGCAAGGGGGAGCGGAGGTATTCGATGAGAGTCGA CAAGAAGGATGGGAGGCTGCGATCGCGCGTACTTTTGATGAGGCAAGGCG AGGGGAGGGATTGGCGCCACGGGAGGAGGGAGGAAAGGGTCCGCTGTGGG TCGCGGAGATAGTCCCTGATCTCGAGCAGTGGGCGAATGAGCTGGTGGTG GTTCATTTTGGCAACGAGTTGAGAGGGAGGGAGGAGGAGGCGGCCATGGA GGCGCCCTTGTTCGTTTTGGAAGGAGGAAGGGAGGAAGGGTTAGTGCACG GGACGACGGTCAAGGCGGGCTACATGCGCGGCAGGGGGCATGTGACGGCA GAGGCGGCGAGAGTTGGAGGGGGGGTGGTGAGCAAGGCCTTTGAACCTGC GCGGTATTATCAGTTGGAGGTCACTAGGACAGACGGAGGAGGAGGAGAAG CAGCACCTGTTGAGGGTGATCAGCAGCAGCAGCAGTATCTGTTATTATTG GTACAGCCGGAGACGGGTGTGGTGTCTATGTGTCCGACTGTGGCGAACGT GAAGGTTAAGAAAGTGGATAGGGCAGCGTCAGGGAAGCCGGCGAGAGGGG TGCAATTGGTTCATCGGCCGCTGGGGGAGGAAGAGGCGATGGGAAGGGTG ATGAAGTTGATGAAGGCGGGGTTGGAAGAGGAGGAGGCGGTCGAATACTT GAAGTGAAGGGAGGTGGAGGGAAGGAGGGGAGGAAGACTAGCGGACCGGG TTGCAAATGAGGAGATTTTTCTAAGTAGCTTATGACATGGAAGAGAGAGA GGATGATGGGGATAAGGCGACAAAATCAAGAATTTAGAGAGGACAAACAA ATAATTGCATTTTCGCTCA
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Coding sequence (CDS) from alignment at scaffold_40:76745..78413+

>mRNA_9080 ID=mRNA_9080|Name=jgi.p|Nanoce1779_2|608037|organism=Nannochloropsis oceanica|type=CDS|length=1212bp|location=Sequence derived from alignment at scaffold_40:76745..78413+ (Nannochloropsis oceanica)
ATGCAATTTCAAGTTCCCCTCCCCGAGGTTCCCCTCGGGCCCCGCTTCCT
CACTCTCGACAGCCTGGCGAACCTCGGCGATTTAATCTCTTACAAAGACT
CGGTGCCCTTGGCTTCCCAGTTCAAATATGCCTTGCACTCGGACATCTCC
CTTGGGATAGAAATAGATACAATCGACAGGAAGAAGTGGCAGCCACCCCC
CGCTTCCTCCCTCCCGCCTTCGCTTCACCCCGATGACATGGCATTGCTAG
AATGGGACTTGTTCAAGGGCAAGCAGAAGAGGGCGGGAGAGGATGGGGAG
GAGGCAGGGAGCGAAGCAGGAAGGGAGGCAGGGGGGGAGAGAGAGGAGGA
TACGGGAGGGGTGGCGACTGCAGGGCAGGTGGCAGCGCCGTGGATGTTGA
GGCCGAGGTATGAGACGACGGTGACTTACGATTGTCAGGAGGAAAGGGAG
GGAGGGAGACATGGGAGAAGGAAGAACCCTCCGAAAGCAGAGGGGGGGGA
GGACGAGGAAGAGGAGGAGGAGCAAGGGGGAGCGGAGGTATTCGATGAGA
GTCGACAAGAAGGATGGGAGGCTGCGATCGCGCGTACTTTTGATGAGGCA
AGGCGAGGGGAGGGATTGGCGCCACGGGAGGAGGGAGGAAAGGGTCCGCT
GTGGGTCGCGGAGATAGTCCCTGATCTCGAGCAGTGGGCGAATGAGCTGG
TGGTGGTTCATTTTGGCAACGAGTTGAGAGGGAGGGAGGAGGAGGCGGCC
ATGGAGGCGCCCTTGTTCGTTTTGGAAGGAGGAAGGGAGGAAGGGTTAGT
GCACGGGACGACGGTCAAGGCGGGCTACATGCGCGGCAGGGGGCATGTGA
CGGCAGAGGCGGCGAGAGTTGGAGGGGGGGTGGTGAGCAAGGCCTTTGAA
CCTGCGCGGTATTATCAGTTGGAGGTCACTAGGACAGACGGAGGAGGAGG
AGAAGCAGCACCTGTTGAGGGTGATCAGCAGCAGCAGCAGTATCTGTTAT
TATTGGTACAGCCGGAGACGGGTGTGGTGTCTATGTGTCCGACTGTGGCG
AACGTGAAGGTTAAGAAAGTGGATAGGGCAGCGTCAGGGAAGCCGGCGAG
AGGGGTGCAATTGGTTCATCGGCCGCTGGGGGAGGAAGAGGCGATGGGAA
GGGTGATGAAGTTGATGAAGGCGGGGTTGGAAGAGGAGGAGGCGGTCGAA
TACTTGAAGTGA
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Synonyms
Publications