jgi.p|Nanoce1779_2|611004, mRNA_10565 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611004
Unique NamemRNA_10565
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1535
Alignment locationscaffold_53:91619..93153 -

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Properties
Property NameValue
TranscriptId611090
TrackFilteredModels2
ProteinId611004
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_53supercontigscaffold_53:91619..93153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611004gene_10565Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611004mRNA_10565-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10565CDS_10565Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10565 ID=mRNA_10565|Name=jgi.p|Nanoce1779_2|611004|organism=Nannochloropsis oceanica|type=mRNA|length=1535bp
AACCACAGGACATACATAATCATCATGTTTTACCCTCGATCATTACCTCC
AATAAGCCGGCTTTTTCTTTTGCTATCCATCATCATCCGAGCCGTCACCC
CATGTGGCGCCGCGGAGCCCCTTGTCGAAGGCTTGTCCATATCATCATCT
TTGGTCAAGGTCACGTCCTTTATGAAGAAAGAGGTGTCGCAAGGTGACAT
TGCTCCCCTTTGGTTCACGGTGGCTTCGTTTGACGACCAGCCACAGCACG
TCAACTTCCAAGTCCTCCTACCGGCTGCCAGTGTCACGTACCGCGAGGCC
GCCGTCTTTCCACCCCTGGACGATGATTTAGCAGTCTTGCATGTATTGGA
AGGCGAGGAAAGGGACATGGTTGCGGTGATGTGGACCGGTGTTGCCCTGG
CCCCAGGGCAATCCCGCGTCTTCAATGTAGACGTCAAGATCGAGGCCATC
TCAGAGCAGGCTGCCGTGCAGCTAGAGGCTGTGGTGACGCGCGGCAGCAA
CTTACAGAGTAGTGTGGTACTGAGTACTTTGCCAGTAACGCTGACCAAGA
GGCCCAAGATCACAAAGGCCTTCCTCGAGGAGAAAGCAGTGGAGAAGCTG
AGGGCCAATCCGCACAAAGGACGTCCGAATGAGCACGAGCATGAAAGTTT
TGCAGATTGCAAGCCTTTGCGCCAGGGCCCTGCAGCCGTTGAAGATTGTT
TGGCTGCTTGCTACCAGGAGGAATCGCAGCCGTGCCTGGCCTGTGGGTAC
GACCCGTGGAGCGGCTGCCTGTGTAAGGGAAAGGCGAAGGAGGACAAAGA
CCGTTACCTGGACGGCGTGCCTGTGCTCTATGAGAGGGAGGAGACGGAGG
AAGATGTGAAAGAAATAAAAAGTGAAGCAGCACAGCCATACCGACCACTT
TTTCTGGACCGGAGAGGTGAGATCTTGATCTTCCCCGGCCTCTTTTCCGA
GGAGCAATGCCTCGACATGGAGGGGTACCTAGCCGAGCTGGTGGCAGAGC
ACAAGACGCAGCGCCATATCGTGCCGGGTGTCAATGACAGCCCACTTCAT
GCCTTGGTAAAAAGAATGTTGCCGATACCGGAAGCAACTTTCGAGGAGTT
CGTGACTTTTTCGGAGGAGGATGTGGAGGTGGATCCGCACTATGATGAGG
TCAAGAACGGGGAGACCCACAAGCTTCTCCTTTTCCTGGATACGGTAGCG
GGAACGCGCTTCTGGGAAAGCAAAGAGACATACAGAAAAAAGAATTGCCC
GCTGGTAGTGGGGCCGGCTCGAGGTACGGTGGTTATATTTCCTATGTCGC
TTTATCACGACTCGGCTCGGTACGAGCCCCAGTATAGCATCAAACGCACG
CTGGGCCTGCGGATGTCTCTTCCACCATTTGATTCCCTTGTTGAGAAAAG
TGCAATTGGACATGTTCAATCAAGAGGGGACATGAGGATCGGGCCAGGAG
CAGCCGCAGTGGTAGCTGCTGAGGCCAGATGAGCATGAAATGGATGAAGG
GAAAATTTAAAAGAGACACATGACAATGGATGAGT
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protein sequence of jgi.p|Nanoce1779_2|611004

>mRNA_10565-protein ID=mRNA_10565-protein|Name=jgi.p|Nanoce1779_2|611004|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MFYPRSLPPISRLFLLLSIIIRAVTPCGAAEPLVEGLSISSSLVKVTSFM
KKEVSQGDIAPLWFTVASFDDQPQHVNFQVLLPAASVTYREAAVFPPLDD
DLAVLHVLEGEERDMVAVMWTGVALAPGQSRVFNVDVKIEAISEQAAVQL
EAVVTRGSNLQSSVVLSTLPVTLTKRPKITKAFLEEKAVEKLRANPHKGR
PNEHEHESFADCKPLRQGPAAVEDCLAACYQEESQPCLACGYDPWSGCLC
KGKAKEDKDRYLDGVPVLYEREETEEDVKEIKSEAAQPYRPLFLDRRGEI
LIFPGLFSEEQCLDMEGYLAELVAEHKTQRHIVPGVNDSPLHALVKRMLP
IPEATFEEFVTFSEEDVEVDPHYDEVKNGETHKLLLFLDTVAGTRFWESK
ETYRKKNCPLVVGPARGTVVIFPMSLYHDSARYEPQYSIKRTLGLRMSLP
PFDSLVEKSAIGHVQSRGDMRIGPGAAAVVAAEAR*
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mRNA from alignment at scaffold_53:91619..93153-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10565 ID=mRNA_10565|Name=jgi.p|Nanoce1779_2|611004|organism=Nannochloropsis oceanica|type=mRNA|length=1535bp|location=Sequence derived from alignment at scaffold_53:91619..93153- (Nannochloropsis oceanica)
AACCACAGGACATACATAATCATCATGTTTTACCCTCGATCATTACCTCC
AATAAGCCGGCTTTTTCTTTTGCTATCCATCATCATCCGAGCCGTCACCC
CATGTGGCGCCGCGGAGCCCCTTGTCGAAGGCTTGTCCATATCATCATCT
TTGGTCAAGGTCACGTCCTTTATGAAGAAAGAGGTGTCGCAAGGTGACAT
TGCTCCCCTTTGGTTCACGGTGGCTTCGTTTGACGACCAGCCACAGCACG
TCAACTTCCAAGTCCTCCTACCGGCTGCCAGTGTCACGTACCGCGAGGCC
GCCGTCTTTCCACCCCTGGACGATGATTTAGCAGTCTTGCATGTATTGGA
AGGCGAGGAAAGGGACATGGTTGCGGTGATGTGGACCGGTGTTGCCCTGG
CCCCAGGGCAATCCCGCGTCTTCAATGTAGACGTCAAGATCGAGGCCATC
TCAGAGCAGGCTGCCGTGCAGCTAGAGGCTGTGGTGACGCGCGGCAGCAA
CTTACAGAGTAGTGTGGTACTGAGTACTTTGCCAGTAACGCTGACCAAGA
GGCCCAAGATCACAAAGGCCTTCCTCGAGGAGAAAGCAGTGGAGAAGCTG
AGGGCCAATCCGCACAAAGGACGTCCGAATGAGCACGAGCATGAAAGTTT
TGCAGATTGCAAGCCTTTGCGCCAGGGCCCTGCAGCCGTTGAAGATTGTT
TGGCTGCTTGCTACCAGGAGGAATCGCAGCCGTGCCTGGCCTGTGGGTAC
GACCCGTGGAGCGGCTGCCTGTGTAAGGGAAAGGCGAAGGAGGACAAAGA
CCGTTACCTGGACGGCGTGCCTGTGCTCTATGAGAGGGAGGAGACGGAGG
AAGATGTGAAAGAAATAAAAAGTGAAGCAGCACAGCCATACCGACCACTT
TTTCTGGACCGGAGAGGTGAGATCTTGATCTTCCCCGGCCTCTTTTCCGA
GGAGCAATGCCTCGACATGGAGGGGTACCTAGCCGAGCTGGTGGCAGAGC
ACAAGACGCAGCGCCATATCGTGCCGGGTGTCAATGACAGCCCACTTCAT
GCCTTGGTAAAAAGAATGTTGCCGATACCGGAAGCAACTTTCGAGGAGTT
CGTGACTTTTTCGGAGGAGGATGTGGAGGTGGATCCGCACTATGATGAGG
TCAAGAACGGGGAGACCCACAAGCTTCTCCTTTTCCTGGATACGGTAGCG
GGAACGCGCTTCTGGGAAAGCAAAGAGACATACAGAAAAAAGAATTGCCC
GCTGGTAGTGGGGCCGGCTCGAGGTACGGTGGTTATATTTCCTATGTCGC
TTTATCACGACTCGGCTCGGTACGAGCCCCAGTATAGCATCAAACGCACG
CTGGGCCTGCGGATGTCTCTTCCACCATTTGATTCCCTTGTTGAGAAAAG
TGCAATTGGACATGTTCAATCAAGAGGGGACATGAGGATCGGGCCAGGAG
CAGCCGCAGTGGTAGCTGCTGAGGCCAGATGAGCATGAAATGGATGAAGG
GAAAATTTAAAAGAGACACATGACAATGGATGAGT
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Coding sequence (CDS) from alignment at scaffold_53:91619..93153-

>mRNA_10565 ID=mRNA_10565|Name=jgi.p|Nanoce1779_2|611004|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at scaffold_53:91619..93153- (Nannochloropsis oceanica)
ATGTTTTACCCTCGATCATTACCTCCAATAAGCCGGCTTTTTCTTTTGCT
ATCCATCATCATCCGAGCCGTCACCCCATGTGGCGCCGCGGAGCCCCTTG
TCGAAGGCTTGTCCATATCATCATCTTTGGTCAAGGTCACGTCCTTTATG
AAGAAAGAGGTGTCGCAAGGTGACATTGCTCCCCTTTGGTTCACGGTGGC
TTCGTTTGACGACCAGCCACAGCACGTCAACTTCCAAGTCCTCCTACCGG
CTGCCAGTGTCACGTACCGCGAGGCCGCCGTCTTTCCACCCCTGGACGAT
GATTTAGCAGTCTTGCATGTATTGGAAGGCGAGGAAAGGGACATGGTTGC
GGTGATGTGGACCGGTGTTGCCCTGGCCCCAGGGCAATCCCGCGTCTTCA
ATGTAGACGTCAAGATCGAGGCCATCTCAGAGCAGGCTGCCGTGCAGCTA
GAGGCTGTGGTGACGCGCGGCAGCAACTTACAGAGTAGTGTGGTACTGAG
TACTTTGCCAGTAACGCTGACCAAGAGGCCCAAGATCACAAAGGCCTTCC
TCGAGGAGAAAGCAGTGGAGAAGCTGAGGGCCAATCCGCACAAAGGACGT
CCGAATGAGCACGAGCATGAAAGTTTTGCAGATTGCAAGCCTTTGCGCCA
GGGCCCTGCAGCCGTTGAAGATTGTTTGGCTGCTTGCTACCAGGAGGAAT
CGCAGCCGTGCCTGGCCTGTGGGTACGACCCGTGGAGCGGCTGCCTGTGT
AAGGGAAAGGCGAAGGAGGACAAAGACCGTTACCTGGACGGCGTGCCTGT
GCTCTATGAGAGGGAGGAGACGGAGGAAGATGTGAAAGAAATAAAAAGTG
AAGCAGCACAGCCATACCGACCACTTTTTCTGGACCGGAGAGGTGAGATC
TTGATCTTCCCCGGCCTCTTTTCCGAGGAGCAATGCCTCGACATGGAGGG
GTACCTAGCCGAGCTGGTGGCAGAGCACAAGACGCAGCGCCATATCGTGC
CGGGTGTCAATGACAGCCCACTTCATGCCTTGGTAAAAAGAATGTTGCCG
ATACCGGAAGCAACTTTCGAGGAGTTCGTGACTTTTTCGGAGGAGGATGT
GGAGGTGGATCCGCACTATGATGAGGTCAAGAACGGGGAGACCCACAAGC
TTCTCCTTTTCCTGGATACGGTAGCGGGAACGCGCTTCTGGGAAAGCAAA
GAGACATACAGAAAAAAGAATTGCCCGCTGGTAGTGGGGCCGGCTCGAGG
TACGGTGGTTATATTTCCTATGTCGCTTTATCACGACTCGGCTCGGTACG
AGCCCCAGTATAGCATCAAACGCACGCTGGGCCTGCGGATGTCTCTTCCA
CCATTTGATTCCCTTGTTGAGAAAAGTGCAATTGGACATGTTCAATCAAG
AGGGGACATGAGGATCGGGCCAGGAGCAGCCGCAGTGGTAGCTGCTGAGG
CCAGATGA
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Synonyms
Publications