jgi.p|Nanoce1779_2|611208, mRNA_10364 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611208
Unique NamemRNA_10364
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1108
Alignment locationscaffold_54:105094..106597 +

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Properties
Property NameValue
TranscriptId611294
TrackFilteredModels2
ProteinId611208
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_54supercontigscaffold_54:105094..106597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611208gene_10364Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611208mRNA_10364-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10364CDS_10364Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10364 ID=mRNA_10364|Name=jgi.p|Nanoce1779_2|611208|organism=Nannochloropsis oceanica|type=mRNA|length=1108bp
ACAGCGATGGAGGAAGACGATGGGCCTCCCGGGGACAGCCTGCGGGGTCC
TTCTGACTACGCAGCTCCCTCCCTTTCAACCGGTGGCGGCCGGCACGCCT
CAGCTCACGGCCCCGGGAGCATCACAGGAGCATTCCAGTAGCAGCCCCAG
CCCACCATCAACCGACCCGGGCAGTGTCCTGCGGAAACGAGGGCAGCCCC
ACGCAGCCGCAGACACGTGGTTTCACAGCCGACACTACCCTCCTCAACCC
AGAGGCTGCATCTCCCAATCACGCCCAGCCACCGTCGCGGCGCCTGCCAG
GGCTCTCGACCTCCTCTCCCCCCGTCACTGGCCCCCTCTCTCTCACGACG
GCCAATCCGATTCAAACCTGCGTCACTCTGCTCCAGGCAAATATTTGCCT
CATCCTCCCACATCAGCTGCTGCAGCAGCACCAACAACAGCACAAGTCGA
GAAAACATCACTGAGTCCTTGCTACTCCCCTCCTCCTCACTCCTCCTCTG
CCCCTCCCTCCTCCCTCACTACGGGAAGAGGGACTCCGTCTAAAAATATC
ACCACCTAAGGCGGCCTGAAGGGAAAGAAAATCACCACAGGTTTACCTCT
TGCTATCCTTGGTGGCCGCGTTGACCAGCAGGAGGGCTGCCCTCTACCGA
CAGCAGTGTGCAAGGAGGAGGAAGGGAAAGCAGGACGAACGAGGAGGGAA
GGGGAGGGTCGAAAGCAAGAGGAAAGTGTAAGCCATGATGCATATATGGA
TACTGATCCCAACAGTCTTTACTGCTACTGCTACCACTGCTCCACGCTCC
CAGCTCCTGCTTGCTCCTGCTGCGTCGGCTCGTCATGTGAAGACCCTCGC
CCTTCGCCGGGTTGCCAACCAGGGCGCCACCTGCTACATGAATTCCCTCC
TGCAGACGCTCTACATGTCCCCTCCCTTTCGCCGCGCCCTCTATGCGTGG
CGGTACACGGGTATAGCAAAGAAGAAGAAGGAGAGTGCATCCCCCCTCCA
GCTGCAGCGGTTGTTTGCACGATTGCAGGTTGCTGGGGAGGCGATAGGGG
ATGCACAGCATGAGAAAGAGGCGCCGGGGCAGAACCAGCAGCAGCAGCAG
GAGCAGGA
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protein sequence of jgi.p|Nanoce1779_2|611208

>mRNA_10364-protein ID=mRNA_10364-protein|Name=jgi.p|Nanoce1779_2|611208|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MGLPGTACGVLLTTQLPPFQPVAAGTPQLTAPGASQEHSSSSPSPPSTDP
GSVLRKRGQPHAAADTWFHSRHYPPQPRGCISQSRPATVAAPARALDLLS
PRHWPPLSHDGQSDSNLRHSAPGKYLPHPPTSAAAAAPTTAQVEKTSLSP
C
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mRNA from alignment at scaffold_54:105094..106597+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10364 ID=mRNA_10364|Name=jgi.p|Nanoce1779_2|611208|organism=Nannochloropsis oceanica|type=mRNA|length=1504bp|location=Sequence derived from alignment at scaffold_54:105094..106597+ (Nannochloropsis oceanica)
ACAGCGATGGAGGAAGACGATGGGCCTCCCGGGGACAGCCTGCGGGGTCC
TTCTGACTACGCAGCTCCCTCCCTTTCAACCGGTGGCGGCCGGCACGCCT
CAGCTCACGGCCCCGGGAGCATCACAGGAGCATTCCAGTAGCAGCCCCAG
CCCACCATCAACCGACCCGGGCAGTGTCCTGCGGAAACGAGGGCAGCCCC
ACGCAGCCGCAGACACGTGGTTTCACAGCCGACACTACCCTCCTCAACCC
AGAGGCTGCATCTCCCAATCACGCCCAGCCACCGTCGCGGCGCCTGCCAG
GGCTCTCGACCTCCTCTCCCCCCGTCACTGGCCCCCTCTCTCTCACGACG
GCCAATCCGATTCAAACCTGCGTCACTCTGCTCCAGGCAAATATTTGCCT
CATCCTCCCACATCAGCTGCTGCAGCAGCACCAACAACAGCACAAGTCGA
GAAAACATCACTGAGTCCTTGCTACTCCCCTCCTCCTCACTCCTCCTCTG
CCCCTCCCTCCTCCCTCACTACGGGAAGAGGGACTCCGTCTAAAAATATC
ACCACCTAAGGCGGCCTGAAGGGAAAGAAAATCACCACAGGTTTACCTCT
TGCTATCCTTGGTGGCCGCGTTGACCAGCAGGAGGGCTGCCCTCTACCGA
CAGCAGTGTGCAAGGAGGAGGAAGGGAAAGCAGGACGAACGAGGAGGGAA
GGGGAGGGTCGAAAGCAAGAGGAAAGTGTAAGCCATGATGCATATATGGA
TACTGATCCCAACAGTCTTTACTGCTACTGCTACCACTGCTCCACGCTCC
CAGCTCCTGCTTGCTCCTGCTGCGTCGGCTCGTCATGTGAAGACCCTCGC
CCTTCGCCGGGTTGCCAACCAGGGGTAGGTGGGCCCTCTCTCCCTCTCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCATGCATTGTGTCGCTAGA
TTTTGGCTTTTCCGCACAAATCGTCGTTCCATTCCACCCATTGTCCAAAC
CAGTCTCAACCTCCCCCTCCCTCCCTCCCTCCGTAGCGCCACCTGCTACA
TGAATTCCCTCCTGCAGACGCTCTACATGTCCCCTCCCTTTCGCCGCGCC
CTCTATGCGTGGCGGTACACGGGTATAGCAAAGAAGAAGAAGGAGAGTGC
ATCCCCCCTCCAGCTGCAGGTAGGGAGGGGAGGAGGGAGGGAGGGAGGGA
GGGCGACCTTCCGCCGCGCTCTCTAGGCGTGTCGGGTAGTAGGGAAGGAG
GGAGGGAGGGAGGGACGGGAGGAGGGAGTGACAGGAGGACAGGGCTCTTT
CCATCCACACTATCGCCCTAAGGTTTAACTCTTTTTTTTTTCCATCCTTA
CTATTTATTTACGTTCCATTTCCCTCCCTTCCTTTATTTAAACCTCACTG
CAGCGGTTGTTTGCACGATTGCAGGTTGCTGGGGAGGCGATAGGGGATGC
ACAGCATGAGAAAGAGGCGCCGGGGCAGAACCAGCAGCAGCAGCAGGAGC
AGGA
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Coding sequence (CDS) from alignment at scaffold_54:105094..106597+

>mRNA_10364 ID=mRNA_10364|Name=jgi.p|Nanoce1779_2|611208|organism=Nannochloropsis oceanica|type=CDS|length=455bp|location=Sequence derived from alignment at scaffold_54:105094..106597+ (Nannochloropsis oceanica)
ATGGGCCTCCCGGGGACAGCCTGCGGGGTCCTTCTGACTACGCAGCTCCC
TCCCTTTCAACCGGTGGCGGCCGGCACGCCTCAGCTCACGGCCCCGGGAG
CATCACAGGAGCATTCCAGTAGCAGCCCCAGCCCACCATCAACCGACCCG
GGCAGTGTCCTGCGGAAACGAGGGCAGCCCCACGCAGCCGCAGACACGTG
GTTTCACAGCCGACACTACCCTCCTCAACCCAGAGGCTGCATCTCCCAAT
CACGCCCAGCCACCGTCGCGGCGCCTGCCAGGGCTCTCGACCTCCTCTCC
CCCCGTCACTGGCCCCCTCTCTCTCACGACGGCCAATCCGATTCAAACCT
GCGTCACTCTGCTCCAGGCAAATATTTGCCTCATCCTCCCACATCAGCTG
CTGCAGCAGCACCAACAACAGCACAAGTCGAGAAAACATCACTGAGTCCT
TGCTA
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Synonyms
Publications