jgi.p|Nanoce1779_2|616171, mRNA_12102 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|616171
Unique NamemRNA_12102
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length994
Alignment locationscaffold_113:31901..33302 +

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Properties
Property NameValue
TranscriptId616257
TrackFilteredModels2
ProteinId616171
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_113supercontigscaffold_113:31901..33302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|616171gene_12102Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|616171mRNA_12102-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_12102CDS_12102Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_12102 ID=mRNA_12102|Name=jgi.p|Nanoce1779_2|616171|organism=Nannochloropsis oceanica|type=mRNA|length=994bp
GTGGGCAAGACGGAGGTTGATGTCCTCCAAGATCTTCTCAATCGGCTGCT
GCTGCTGTTGCTGCTCCCCCTACTGCTGGTACTCTCGCTCCTACTGCTGT
TGTGGCTAATGTCACTCTCCTTACTGCTGCTGCTGCTGCTGGAGAGGAAG
GAGCGCAGTGCCCCGCACACACACCCACTGGCCTTCTTCCCACCATCAAT
GCTGCTACTTCTCCTTTTGCTGCTTCTGCTACTACTGCCCTTCGCCTGCT
GCGCCATGGCATCCGGTGACGGGCTTCCAAACCTGGACATCATGTCCTCC
TCTCCGTCCTCTCTCCCGTCCTCCCTCTCTTCCTCGCCCATCCCTCGACA
CTGCTGCTGCTGCTGCTGTTGTTGCTGCTGTTGCTGTTGGGGCCTCCTGT
GGCCGTTATTTCGTCCTCCTGCTGCTCCTGCTTGTCCGTTTGACAGTAAC
GGGCTTTCGTCGCTCCCGCTAAAATGGGAGAATGCTGTCGAGCCGGGCGT
ATGAAACGAAGTCGAAGCTCCTCCTACCGATGAAACTCCGCCACCGCGCG
TGGAGATAGTGTTCGTAGGCGAGGTGACAATGTCCCCGGGGTGTTCTGCT
GATTGTGGTTGTTGGTGCTGCTGCCGGTGGGGGGTGAGACCAGGACGGAG
TGAGGGGTCTGACATCCGGCGCGGAACTGGGGCAGGAAGTGAAGGGGGAG
ATGAGGCTTGCTTAAAGTGACTCTACAGTTATCGTCTTTGTTGTCACTGT
CTTGTCTACTGCCTTTCTATGTCTTGTTCACGAGGGGTTGGGATGCGAGG
AAGCGTGAGGACCGATATATGCGAGTCGAGAGACGGACAAGTGCAGCACC
CAAAATAGCAGTTCCATCATCACTATTTTTCTTCATGTTCCCGTGCTTCG
CTTTTGAAATCCGCAAGGCGCCTACATGCAAAGACAACAGATACAAGATA
CACTTGTCTAGCCAATTTAATTCCTGTGCGAGAAGTCACGGACT
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protein sequence of jgi.p|Nanoce1779_2|616171

>mRNA_12102-protein ID=mRNA_12102-protein|Name=jgi.p|Nanoce1779_2|616171|organism=Nannochloropsis oceanica|type=polypeptide|length=132bp
MSLSLLLLLLLERKERSAPHTHPLAFFPPSMLLLLLLLLLLLLPFACCAM
ASGDGLPNLDIMSSSPSSLPSSLSSSPIPRHCCCCCCCCCCCCWGLLWPL
FRPPAAPACPFDSNGLSSLPLKWENAVEPGV*
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mRNA from alignment at scaffold_113:31901..33302+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12102 ID=mRNA_12102|Name=jgi.p|Nanoce1779_2|616171|organism=Nannochloropsis oceanica|type=mRNA|length=1402bp|location=Sequence derived from alignment at scaffold_113:31901..33302+ (Nannochloropsis oceanica)
GTGGGCAAGACGGAGGTTGATGTCCTCCAAGATCTTCTCAATCGGCTGCT
GCTGCTGTTGCTGCTCCCCCTACTGCTGGTACTCTCGCTCCTACTGCTGT
TGTGGCTAATGTCACTCTCCTTACTGCTGCTGCTGCTGCTGGAGAGGAAG
GAGCGCAGTGCCCCGCACACACACCCACTGGCCTTCTTCCCACCATCAAT
GCTGCTACTTCTCCTTTTGCTGCTTCTGCTACTACTGCCCTTCGCCTATT
ATGCAGCATATACACGCACGATACATCAGACTGAATGCTTCCACAGAACA
GCCTCTGCCCCGTCCCTTCTCACCTCCTTCCTTCCCTCCCTCCCTCCCTC
CCTACCTGCTGCGCCATGGCATCCGGTGACGGGCTTCCAAACCTGGACAT
CATGTCCTCCTCTCCGTCCTCTCTCCCGTCCTCCCTCTCTTCCTCGCCCA
TCCCTCGACACTGCTGCTGCTGCTGCTGTTGTTGCTGCTGTTGCTGTTGG
GGCCTCCTGTGGCCGTTATTTCGTCCTCCTGCTGCTCCTGCTTGTCCGTT
TGACAGTAACGGGCTTTCGTCGCTCCTGTTTTGAGACAACAAAATAGGTG
GTATAGACTCAATTCAATCTGTAGCAGCCCTCCCTCCCTCCCTCCCTCCT
TCCCTTCTTCCCTCCCTCCCTACCCGCTAAAATGGGAGAATGCTGTCGAG
CCGGGCGTATGAAACGAAGTCGAAGCTCCTCCTACCGATGAAACTCCGCC
ACCGCGCGCTGAGATGGATGGGAAAGGGGCAGGAGAGAGAGAGGGAATGA
AGGAGGATTGTTGGCAAGCGATAATAGCAAGCGAGGAGCCTGTCACGTGC
GTCGGAACTTGGGAGGGGCAATCACAGGAGAGAGGGGAGAGAGGGAGGGA
GGATGGGAGGTGGGGAAGGGGACAGGTAGGGTGGCTACTTGAGGAATGTG
ACACGTACTGGAGATAGTGTTCGTAGGCGAGGTGACAATGTCCCCGGGGT
GTTCTGCTGATTGTGGTTGTTGGTGCTGCTGCCGGTGGGGGGTGAGACCA
GGACGGAGTGAGGGGTCTGACATCCGGCGCGGAACTGGGGCAGGAAGTGA
AGGGGGAGATGAGGCTTGCTTAAAGTGACTCTACAGTTATCGTCTTTGTT
GTCACTGTCTTGTCTACTGCCTTTCTATGTCTTGTTCACGAGGGGTTGGG
ATGCGAGGAAGCGTGAGGACCGATATATGCGAGTCGAGAGACGGACAAGT
GCAGCACCCAAAATAGCAGTTCCATCATCACTATTTTTCTTCATGTTCCC
GTGCTTCGCTTTTGAAATCCGCAAGGCGCCTACATGCAAAGACAACAGAT
ACAAGATACACTTGTCTAGCCAATTTAATTCCTGTGCGAGAAGTCACGGA
CT
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Coding sequence (CDS) from alignment at scaffold_113:31901..33302+

>mRNA_12102 ID=mRNA_12102|Name=jgi.p|Nanoce1779_2|616171|organism=Nannochloropsis oceanica|type=CDS|length=1188bp|location=Sequence derived from alignment at scaffold_113:31901..33302+ (Nannochloropsis oceanica)
ATGTCACTCTCCTTACTGCTGCTGCTGCTGCTGGAGAGGAAGGAGCGCAG
TGCCCCGCACACACACCCACTGGCCTTCTTCCCACCATCAATGCTGCTAC
TTCTCCTTTTGCTGCTTCTGCTACTACTGCCCTTCGCCTGCTGCGCCATG
GCATCCGGTGACGGGCTTCCAAACCTGGACATCATGTCCTCCTCTCCGTC
CTCTCTCCCGTCCTCCCTCTCTTCCTCGCCCATCCCTCGACACTGCTGCT
GCTGCTGCTGTTGTTGCTGCTGTTGCTGTTGGGGCCTCCTGTGGCCGTTA
TTTCGTCCTCCTGCTGCTCCTGCTTGTCCGTTTGACAGTAACGGGCTTTC
GTCGCTCCCGCTAAAATGGGAGAATGCTGTCGAGCCGGGCGTATGAATGT
CACTCTCCTTACTGCTGCTGCTGCTGCTGGAGAGGAAGGAGCGCAGTGCC
CCGCACACACACCCACTGGCCTTCTTCCCACCATCAATGCTGCTACTTCT
CCTTTTGCTGCTTCTGCTACTACTGCCCTTCGCCTGCTGCGCCATGGCAT
CCGGTGACGGGCTTCCAAACCTGGACATCATGTCCTCCTCTCCGTCCTCT
CTCCCGTCCTCCCTCTCTTCCTCGCCCATCCCTCGACACTGCTGCTGCTG
CTGCTGTTGTTGCTGCTGTTGCTGTTGGGGCCTCCTGTGGCCGTTATTTC
GTCCTCCTGCTGCTCCTGCTTGTCCGTTTGACAGTAACGGGCTTTCGTCG
CTCCCGCTAAAATGGGAGAATGCTGTCGAGCCGGGCGTATGAATGTCACT
CTCCTTACTGCTGCTGCTGCTGCTGGAGAGGAAGGAGCGCAGTGCCCCGC
ACACACACCCACTGGCCTTCTTCCCACCATCAATGCTGCTACTTCTCCTT
TTGCTGCTTCTGCTACTACTGCCCTTCGCCTGCTGCGCCATGGCATCCGG
TGACGGGCTTCCAAACCTGGACATCATGTCCTCCTCTCCGTCCTCTCTCC
CGTCCTCCCTCTCTTCCTCGCCCATCCCTCGACACTGCTGCTGCTGCTGC
TGTTGTTGCTGCTGTTGCTGTTGGGGCCTCCTGTGGCCGTTATTTCGTCC
TCCTGCTGCTCCTGCTTGTCCGTTTGACAGTAACGGGCTTTCGTCGCTCC
CGCTAAAATGGGAGAATGCTGTCGAGCCGGGCGTATGA
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Synonyms
Publications