jgi.p|Nanoce1779_2|617450, mRNA_11828 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|617450
Unique NamemRNA_11828
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length776
Alignment locationscaffold_138:10238..11734 -

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Properties
Property NameValue
TranscriptId617536
TrackFilteredModels2
ProteinId617450
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_138supercontigscaffold_138:10238..11734 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|617450gene_11828Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|617450mRNA_11828-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11828CDS_11828Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11828 ID=mRNA_11828|Name=jgi.p|Nanoce1779_2|617450|organism=Nannochloropsis oceanica|type=mRNA|length=776bp
AGGAGGAGGAGGAAGAGTGGGAGGAAGAGCTGCCATGCAGGAGAAGGACC
GAGGGAGGGGGGTAGAGGGGCGGGGAGAACGGGATGGGAGAGGAGGCGGA
AGGGTCATCCTCAGACGCATGCATTTACGATACGTGAACGGTGGCAACTC
TTCTTGAGCCTCTGGCCTTACACGGTGCCATTGATCACTGTGTACTGGGC
GGAATACGCGATGCAATCCGGCACTTGGTCGGCCATCGGCTTTCCCGTCT
ACTCGGAAAAGGCCCGCAAGTCCTTCTACTTCTATGCCAATATGTGCTAC
CAGGTCGGCGTCTTCATCTCCCGCTCATCCGGCATGTTTATTTCTCCCTC
CTTGACATTACTCTGGATCCTCCCCGCCCTTCAATGCCTCCTCCTCATCT
TTTTCAGCCTGAACGCTGTCTGGCAGTTCTGGTATGACTGGACGCTGCTC
ATACCTTGCTTCATCGCGGGGCTGCTGGGTGGCGCCGTATATGTGGCCGG
CTTTAGTTTGATTTCGCGAAATTCCCGGGAGGAACACAGGGAACTGGCTT
TAGTATCCTCGTCAATTGCGGACACCGTTGGAATTATGTTAAGCGACGTA
TTCGGGCTCGTGTTGCAGGGCTGTCTGTATCGCGCTAATGGCATTCCTGG
CGCGACGTTTTCCTGTGGTGCGTGACGCAGGCCATTGTTTTGCATAGGAT
GTATATAATCAAGTAAGGATTGAAAGTAATACGAATCAAAGCAATCCACA
AGGAACAAAAGAATTGGTGTTAAAGA
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protein sequence of jgi.p|Nanoce1779_2|617450

>mRNA_11828-protein ID=mRNA_11828-protein|Name=jgi.p|Nanoce1779_2|617450|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MQSGTWSAIGFPVYSEKARKSFYFYANMCYQVGVFISRSSGMFISPSLTL
LWILPALQCLLLIFFSLNAVWQFWYDWTLLIPCFIAGLLGGAVYVAGFSL
ISRNSREEHRELALVSSSIADTVGIMLSDVFGLVLQGCLYRANGIPGATF
SCGA*
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mRNA from alignment at scaffold_138:10238..11734-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11828 ID=mRNA_11828|Name=jgi.p|Nanoce1779_2|617450|organism=Nannochloropsis oceanica|type=mRNA|length=1497bp|location=Sequence derived from alignment at scaffold_138:10238..11734- (Nannochloropsis oceanica)
AGGAGGAGGAGGAAGAGTGGGAGGAAGAGCTGCCATGCAGGAGAAGGACC
GAGGGAGGGGGGTAGAGGGGCGGGGAGAACGGGATGGGAGAGGAGGCGGA
AGGGTCATCCTCAGACGCATGCATTTACGATACGTGAACGGTGGCAACTC
TTCTTGAGCCTCTGGCCTTACACGGTGCCATTGGTGAGGAGGCTGGAGGG
GGGGGTCGGAGGGAGGGAGGGTAGCTGGAGACGGGCAGGCCGAGCACTGC
AGTTGTAGCATGCTCCCATTCATTCAAGCATGTCCTCTCTCACTCCCTCC
CTCCCTTAGATCACTGTGTACTGGGCGGAATACGCGATGCAATCCGGCAC
TTGGTCGGCCATCGGCTTTCCCGTCTACTCGGAAAAGGCCCGCAAGTCCT
TCTACTTCTATGCCAATATGTGCTACCAGGCGCGTGTGGATGCCCCGAAC
CCCTTCCCTCCTTTCGTTCCCCCCTCCTTTCGTGATTCCCTTCCTTCTCT
CCTCATTTCTCTGACTGTTCTCATCACTCCTTTGCCTCCCAGGTCGGCGT
CTTCATCTCCCGCTCATCCGGCATGTTTATTTCTCCCTCCTTGACATTAC
TCTGGATCCTCCCCGCCCTTCAATGCCTCCTCCTCATCTTTTTCAGCCTG
AACGCTGTCTGGCAGTTCTGGTGCGTGTGTGGGAGGGAAGGAGGAAGGGG
GGAGAGGATATAGGCAAGAGATAGAAAGCGGAAGGCGTGAAGGTGGGGAG
GCTTTACTCGCACCGATAGTCACTCAACCACACGACATGGTGTTTCGATA
TACTGGAGGTCAAACCACGGTCCGTATCGACGACCTCACGATACAAATCC
ACTTAACTCCACTCTTCCTCCCCCGAAACAAAAAAGTCGCCTCTATTTAC
AATGCACTTTTTCAACACACTTGTCCATAGGTATGACTGGACGCTGCTCA
TACCTTGCTTCATCGCGGGGCTGCTGGGTGGCGCCGTATATGTGGCCGGC
TTTAGTTTGATTTCGCGAAATTCCCGGGAGGAACACAGGTAGGAGCGTGC
TTCGAGGGGCCACTTAGACTGTTTTCCCTGCACCTTTTCCTTTACTCATA
CATGCACACGCACACTCTCTTTCTCAAGGGAACTGGCTTTAGTATCCTCG
TCAATTGCGGACACCGTTGGAATTATGTTAAGCGACGTATTCGGGCTCGT
GTTGCAGGTAAGGAATCGATAACCGTTTTGTCACTTCTTTTCTGATATGT
GCCTCTGCTCATGTTTAATCTACAAATTCATGCATACTCAACCTTATCTT
CACGACACACCCGCATTCTCTCTCCCCTTCACCTCTCAGGGCTGTCTGTA
TCGCGCTAATGGCATTCCTGGCGCGACGTTTTCCTGTGGTGCGTGACGCA
GGCCATTGTTTTGCATAGGATGTATATAATCAAGTAAGGATTGAAAGTAA
TACGAATCAAAGCAATCCACAAGGAACAAAAGAATTGGTGTTAAAGA
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Coding sequence (CDS) from alignment at scaffold_138:10238..11734-

>mRNA_11828 ID=mRNA_11828|Name=jgi.p|Nanoce1779_2|617450|organism=Nannochloropsis oceanica|type=CDS|length=2325bp|location=Sequence derived from alignment at scaffold_138:10238..11734- (Nannochloropsis oceanica)
GGCTGTCTGTATCGCGCTAATGGCATTCCTGGCGCGACGTTTTCCTGTGG
TGCGTGAGGAACTGGCTTTAGTATCCTCGTCAATTGCGGACACCGTTGGA
ATTATGTTAAGCGACGTATTCGGGCTCGTGTTGCAGGTATGACTGGACGC
TGCTCATACCTTGCTTCATCGCGGGGCTGCTGGGTGGCGCCGTATATGTG
GCCGGCTTTAGTTTGATTTCGCGAAATTCCCGGGAGGAACACAGGTCGGC
GTCTTCATCTCCCGCTCATCCGGCATGTTTATTTCTCCCTCCTTGACATT
ACTCTGGATCCTCCCCGCCCTTCAATGCCTCCTCCTCATCTTTTTCAGCC
TGAACGCTGTCTGGCAGTTCTGATGCAATCCGGCACTTGGTCGGCCATCG
GCTTTCCCGTCTACTCGGAAAAGGCCCGCAAGTCCTTCTACTTCTATGCC
AATATGTGCTACCAGGGCTGTCTGTATCGCGCTAATGGCATTCCTGGCGC
GACGTTTTCCTGTGGTGCGTGAGGAACTGGCTTTAGTATCCTCGTCAATT
GCGGACACCGTTGGAATTATGTTAAGCGACGTATTCGGGCTCGTGTTGCA
GGTATGACTGGACGCTGCTCATACCTTGCTTCATCGCGGGGCTGCTGGGT
GGCGCCGTATATGTGGCCGGCTTTAGTTTGATTTCGCGAAATTCCCGGGA
GGAACACAGGTCGGCGTCTTCATCTCCCGCTCATCCGGCATGTTTATTTC
TCCCTCCTTGACATTACTCTGGATCCTCCCCGCCCTTCAATGCCTCCTCC
TCATCTTTTTCAGCCTGAACGCTGTCTGGCAGTTCTGATGCAATCCGGCA
CTTGGTCGGCCATCGGCTTTCCCGTCTACTCGGAAAAGGCCCGCAAGTCC
TTCTACTTCTATGCCAATATGTGCTACCAGGGCTGTCTGTATCGCGCTAA
TGGCATTCCTGGCGCGACGTTTTCCTGTGGTGCGTGAGGAACTGGCTTTA
GTATCCTCGTCAATTGCGGACACCGTTGGAATTATGTTAAGCGACGTATT
CGGGCTCGTGTTGCAGGTATGACTGGACGCTGCTCATACCTTGCTTCATC
GCGGGGCTGCTGGGTGGCGCCGTATATGTGGCCGGCTTTAGTTTGATTTC
GCGAAATTCCCGGGAGGAACACAGGTCGGCGTCTTCATCTCCCGCTCATC
CGGCATGTTTATTTCTCCCTCCTTGACATTACTCTGGATCCTCCCCGCCC
TTCAATGCCTCCTCCTCATCTTTTTCAGCCTGAACGCTGTCTGGCAGTTC
TGATGCAATCCGGCACTTGGTCGGCCATCGGCTTTCCCGTCTACTCGGAA
AAGGCCCGCAAGTCCTTCTACTTCTATGCCAATATGTGCTACCAGGGCTG
TCTGTATCGCGCTAATGGCATTCCTGGCGCGACGTTTTCCTGTGGTGCGT
GAGGAACTGGCTTTAGTATCCTCGTCAATTGCGGACACCGTTGGAATTAT
GTTAAGCGACGTATTCGGGCTCGTGTTGCAGGTATGACTGGACGCTGCTC
ATACCTTGCTTCATCGCGGGGCTGCTGGGTGGCGCCGTATATGTGGCCGG
CTTTAGTTTGATTTCGCGAAATTCCCGGGAGGAACACAGGTCGGCGTCTT
CATCTCCCGCTCATCCGGCATGTTTATTTCTCCCTCCTTGACATTACTCT
GGATCCTCCCCGCCCTTCAATGCCTCCTCCTCATCTTTTTCAGCCTGAAC
GCTGTCTGGCAGTTCTGATGCAATCCGGCACTTGGTCGGCCATCGGCTTT
CCCGTCTACTCGGAAAAGGCCCGCAAGTCCTTCTACTTCTATGCCAATAT
GTGCTACCAGGGCTGTCTGTATCGCGCTAATGGCATTCCTGGCGCGACGT
TTTCCTGTGGTGCGTGAGGAACTGGCTTTAGTATCCTCGTCAATTGCGGA
CACCGTTGGAATTATGTTAAGCGACGTATTCGGGCTCGTGTTGCAGGTAT
GACTGGACGCTGCTCATACCTTGCTTCATCGCGGGGCTGCTGGGTGGCGC
CGTATATGTGGCCGGCTTTAGTTTGATTTCGCGAAATTCCCGGGAGGAAC
ACAGGTCGGCGTCTTCATCTCCCGCTCATCCGGCATGTTTATTTCTCCCT
CCTTGACATTACTCTGGATCCTCCCCGCCCTTCAATGCCTCCTCCTCATC
TTTTTCAGCCTGAACGCTGTCTGGCAGTTCTGATGCAATCCGGCACTTGG
TCGGCCATCGGCTTTCCCGTCTACTCGGAAAAGGCCCGCAAGTCCTTCTA
CTTCTATGCCAATATGTGCTACCAG
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Synonyms
Publications