jgi.p|Nanoce1779_2|599920, gene_7758 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599920
Unique Namegene_7758
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_21:253208..256339 -

Link to JBrowse

Properties
Property NameValue
TranscriptId600006
ProteinId599920
Product nameMajor facilitator superfamily domain-containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:253208..256339 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0015520tetracycline:proton antiporter activity
Vocabulary: Biological Process
TermDefinition
GO:0015904tetracycline transport
GO:0046677response to antibiotic
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL035ncniL035Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01320NO17G01320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599920mRNA_7758-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599920mRNA_7758Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|599920

>mRNA_7758-protein ID=mRNA_7758-protein|Name=jgi.p|Nanoce1779_2|599920|organism=Nannochloropsis oceanica|type=polypeptide|length=627bp
MSPHRSHSDGGDVFHGHGGNTTPCNGGGMKRSRSFLDLINEKIEQEPSTN
PDTVSLYLKFIVSLDFLAVATVVPLLPQYLVRTGCCNEQLAFISSAYSLA
QLVGGVLLGWVSDGIMTRKTILMTSLLGSAASYGMIGVSSSRPLLILSRI
VVGLVKQTMTMTTALISDLPLDRSRRTKHMSHLTAAVTVSWIVGPALGGY
LFWLSPCLPPLVAAVIFTIAALLCLIGVPNHPDPPPPGFSPLSTSISSPD
LLGMSNGNSGSGFKSKSKSFGTFLSTLRSNFREAFNDPTIIRIVGIRLLY
SFTIISLMPTNFVGYLEARYGLKSHEVAYLHSYRATLSFLAQTFLVSAVV
KHHTFSEEATARAAIVFGVFLKYSEVLNRDRLVFLFVTTPAIVGVFSLFD
CSLQGIYTDSIPAGHRGAALGSMSALQSLVKVAAPLYGGEIFQRVGHERR
PEIIFIHYVVLATVVWLVFPPGRHRPKQHEQRLPPSVSTGSLSQIVEGKE
EGNALYGNDDMSSSSSSEGRSRGSSSTSTGLVRRNVSAHPLHGNPSTASL
SDAVPVMRPAHELTTLTDEAIASAPATISSSSRGGNSSREPVAIRRGGMT
SLPSSERLHPIRGRFDRGSRVRIGQI*
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Synonyms
Publications