jgi.p|Nanoce1779_2|599920, mRNA_7758 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599920
Unique Name	mRNA_7758
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3132
Alignment location	scaffold_21:253208..256339 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	600006
Track	FilteredModels2
ProteinId	599920

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:253208..256339 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599920	gene_7758	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599920	mRNA_7758-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7758	CDS_7758	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:253208..256339-
coding sequence from alignment at scaffold_21:253208..256339-

mRNA sequence

>mRNA_7758 ID=mRNA_7758|Name=jgi.p|Nanoce1779_2|599920|organism=Nannochloropsis oceanica|type=mRNA|length=3132bp
AAGAACATAAAAGGGGCCGAGCACCGAGCATGTCGTGAAATCGCGGATAC
TGCCACACTGTCCCTCGAAGGACCATTATCCTTTTGCCAACACGCCACAC
CCCCACATGCCCTCCCGTATAAGCAGACAGGCTGCCAAGGTACCTAGCAT
CCTTGCCATTTTTGGGGGGACCCCTGATCTCCCCACCGCACGCATACCAC
TCAAACACAATCCACGTACGCTTCCGTGTGCTCAGCGAAGATCGTCGTCG
TGTTTTTGAGGACGTTGCTCCCTACTCCCAGTCAACGCACCCACGCATCC
CTATTTCCCACGAGACAGACGATTTCTTCCCAACCCAGCTGCAGGACGCC
CGTGCTGCTTGCCGCTGGCCGGCTAGTCCCGCGGTACTGTTTGTCTTCGC
ATCTCCTCATCAATCCCACCAGCCATGACCGACTCGCTTCGCCAGCGCCC
CAGCCGGAGACGAGAGGAAAGTGTGAGCCCCCTTGTGAAACATTACCTGC
CTGAATCTGCTGCTGTCAAAGGTACGTACGAGAAGAAGCGAAGAAGAGAA
GGGGACTTGTGCCATTTTGACATGGTGTCAGCATGCCCTTTTTGGTCTCC
GTCCATCTCCTCCTATGACCTCCTACTTCTCCTACCTCTCCTCAACTTAT
CCATGATATCCCTTCCACACCTGCGCACAATCTTCTCTCTCATCGCCCCG
CGCATCTCACCTTGATTTGATTGCTGAGCTCCACCTCGCTGTCATTATCA
CCACCTTTAAACAACACCAAACAATGATGCCTCCGCAATGACATGCTCCG
CCCTTTATTGTGCACCTTGTGCCTCACTGCTCATTTCTTCCCTAACCACC
CTCAATCCCACCCCACTTGTTATTCTTTTAACAAACATAATCAGACAAAA
CATCACCTCCAACCAGAAGCAGCAGCAGCAGCACCACCAGCAGCACCCAT
AGCACCGAGCACGAAGATGACCGAAATGGCGACTTCCCACCCCTATTAAT
GAGCCCCCACCGCTCCCACAGCGACGGCGGTGACGTCTTCCACGGCCACG
GCGGGAACACAACCCCTTGCAACGGCGGAGGGATGAAACGCTCCCGCTCT
TTCCTCGACTTGATAAATGAAAAAATCGAGCAAGAGCCAAGCACCAACCC
GGACACCGTCTCCCTATACCTCAAATTCATCGTTTCCTTGGACTTCCTCG
CTGTTGCGACCGTCGTCCCCCTTCTCCCCCAATATTTGGTCCGAACGGGC
TGTTGTAACGAGCAGCTAGCCTTCATTTCCTCTGCCTACAGCCTCGCCCA
GTTGGTAGGAGGGGTACTCCTAGGCTGGGTCTCCGACGGGATCATGACGC
GAAAAACAATCCTAATGACTTCCCTCTTGGGCTCCGCTGCATCCTATGGC
ATGATAGGCGTGTCCTCCTCCCGCCCACTCCTTATACTGTCCCGTATCGT
GGTTGGGTTGGTCAAACAAACCATGACAATGACTACGGCCTTGATTTCCG
ACCTCCCCCTCGACCGGTCCCGTCGGACCAAGCACATGTCCCACCTCACG
GCCGCCGTGACTGTCTCCTGGATTGTAGGCCCTGCCCTCGGGGGATACCT
CTTCTGGCTCTCCCCCTGCCTGCCCCCCCTCGTTGCTGCCGTCATATTCA
CCATTGCCGCCTTGCTCTGCTTGATAGGTGTCCCCAACCACCCCGACCCC
CCACCACCTGGCTTTTCCCCGCTTTCCACCTCCATCTCCTCGCCAGACCT
GCTCGGCATGTCTAATGGCAACAGTGGAAGTGGGTTTAAGTCCAAGAGTA
AGAGCTTCGGCACATTCTTGTCGACGCTTCGGAGCAACTTCAGGGAGGCG
TTCAATGACCCAACCATTATTAGAATAGTGGGGATAAGACTCCTCTACAG
CTTCACCATCATTTCCCTCATGCCCACCAATTTCGTGGGATATTTGGAGG
CGAGATATGGGCTCAAGAGCCATGAAGTCGCCTACTTGCATTCTTACCGC
GCAACGCTGTCGTTTTTAGCACAGACGTTTTTGGTGTCGGCGGTGGTGAA
ACACCATACGTTTTCGGAGGAAGCGACCGCGAGGGCCGCGATTGTGTTTG
GGGTTTTTCTCAAGTACTCCGAGGTGCTGAACCGCGATCGGTTGGTTTTC
TTATTTGTGACCACCCCTGCTATAGTCGGTGTTTTTTCTCTGTTCGATTG
TTCTTTGCAGGGAATTTATACAGACAGTATTCCAGCAGGGCACAGGGGGG
CTGCGCTAGGATCAATGTCGGCGTTGCAGTCGCTGGTTAAGGTTGCGGCG
CCTTTGTATGGGGGGGAGATTTTCCAACGAGTGGGTCATGAACGCCGACC
GGAGATTATCTTCATTCATTATGTGGTGTTAGCGACGGTGGTCTGGCTTG
TCTTTCCCCCTGGCCGGCACCGACCAAAGCAACATGAACAGCGCCTGCCC
CCGTCAGTGTCGACCGGCTCGTTATCACAGATTGTGGAAGGGAAGGAGGA
GGGAAATGCGCTTTATGGGAATGATGACATGAGCAGTAGCAGTAGTAGTG
AAGGTAGAAGTAGAGGGAGCAGCAGTACCAGTACCGGACTCGTCAGACGG
AATGTGTCTGCCCATCCCCTCCACGGCAACCCCTCCACTGCCTCACTCTC
TGACGCCGTGCCGGTCATGCGTCCCGCCCACGAACTCACCACTTTGACTG
ATGAGGCTATTGCTTCTGCTCCTGCTACTATTTCTTCCTCTTCGCGAGGC
GGCAACAGCAGTAGGGAGCCGGTGGCGATCCGGAGGGGAGGAATGACCAG
CCTTCCGAGTTCGGAGAGGCTGCATCCGATTAGGGGCAGGTTTGACAGGG
GAAGCAGGGTTAGGATTGGGCAAATATAGATAGAAAGGAGAGACGAAGGA
GGACGAGAGAGTCGGCACATGGAGAGGTAGGTTGGGCCGCACCAACTGCA
GCAACAGCAGCAACTGCAGCAAGTGTTCTGCCAAAGACTAGAATTCCCAC
TTATTTTATTCCTCACCTCGCAATCGTCAAGTCGCTTTAGTCGGAAGGGG
TAGGGAATAGGAGGGGAGGGAAAGATTATCTCACACACACTGTTTTCACC
ACAAAAACAAAGAAAGAAAGCGAAATCTAAAC

protein sequence of jgi.p|Nanoce1779_2|599920

>mRNA_7758-protein ID=mRNA_7758-protein|Name=jgi.p|Nanoce1779_2|599920|organism=Nannochloropsis oceanica|type=polypeptide|length=627bp
MSPHRSHSDGGDVFHGHGGNTTPCNGGGMKRSRSFLDLINEKIEQEPSTN
PDTVSLYLKFIVSLDFLAVATVVPLLPQYLVRTGCCNEQLAFISSAYSLA
QLVGGVLLGWVSDGIMTRKTILMTSLLGSAASYGMIGVSSSRPLLILSRI
VVGLVKQTMTMTTALISDLPLDRSRRTKHMSHLTAAVTVSWIVGPALGGY
LFWLSPCLPPLVAAVIFTIAALLCLIGVPNHPDPPPPGFSPLSTSISSPD
LLGMSNGNSGSGFKSKSKSFGTFLSTLRSNFREAFNDPTIIRIVGIRLLY
SFTIISLMPTNFVGYLEARYGLKSHEVAYLHSYRATLSFLAQTFLVSAVV
KHHTFSEEATARAAIVFGVFLKYSEVLNRDRLVFLFVTTPAIVGVFSLFD
CSLQGIYTDSIPAGHRGAALGSMSALQSLVKVAAPLYGGEIFQRVGHERR
PEIIFIHYVVLATVVWLVFPPGRHRPKQHEQRLPPSVSTGSLSQIVEGKE
EGNALYGNDDMSSSSSSEGRSRGSSSTSTGLVRRNVSAHPLHGNPSTASL
SDAVPVMRPAHELTTLTDEAIASAPATISSSSRGGNSSREPVAIRRGGMT
SLPSSERLHPIRGRFDRGSRVRIGQI*

mRNA from alignment at scaffold_21:253208..256339-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7758 ID=mRNA_7758|Name=jgi.p|Nanoce1779_2|599920|organism=Nannochloropsis oceanica|type=mRNA|length=3132bp|location=Sequence derived from alignment at scaffold_21:253208..256339- (Nannochloropsis oceanica)
AAGAACATAAAAGGGGCCGAGCACCGAGCATGTCGTGAAATCGCGGATAC
TGCCACACTGTCCCTCGAAGGACCATTATCCTTTTGCCAACACGCCACAC
CCCCACATGCCCTCCCGTATAAGCAGACAGGCTGCCAAGGTACCTAGCAT
CCTTGCCATTTTTGGGGGGACCCCTGATCTCCCCACCGCACGCATACCAC
TCAAACACAATCCACGTACGCTTCCGTGTGCTCAGCGAAGATCGTCGTCG
TGTTTTTGAGGACGTTGCTCCCTACTCCCAGTCAACGCACCCACGCATCC
CTATTTCCCACGAGACAGACGATTTCTTCCCAACCCAGCTGCAGGACGCC
CGTGCTGCTTGCCGCTGGCCGGCTAGTCCCGCGGTACTGTTTGTCTTCGC
ATCTCCTCATCAATCCCACCAGCCATGACCGACTCGCTTCGCCAGCGCCC
CAGCCGGAGACGAGAGGAAAGTGTGAGCCCCCTTGTGAAACATTACCTGC
CTGAATCTGCTGCTGTCAAAGGTACGTACGAGAAGAAGCGAAGAAGAGAA
GGGGACTTGTGCCATTTTGACATGGTGTCAGCATGCCCTTTTTGGTCTCC
GTCCATCTCCTCCTATGACCTCCTACTTCTCCTACCTCTCCTCAACTTAT
CCATGATATCCCTTCCACACCTGCGCACAATCTTCTCTCTCATCGCCCCG
CGCATCTCACCTTGATTTGATTGCTGAGCTCCACCTCGCTGTCATTATCA
CCACCTTTAAACAACACCAAACAATGATGCCTCCGCAATGACATGCTCCG
CCCTTTATTGTGCACCTTGTGCCTCACTGCTCATTTCTTCCCTAACCACC
CTCAATCCCACCCCACTTGTTATTCTTTTAACAAACATAATCAGACAAAA
CATCACCTCCAACCAGAAGCAGCAGCAGCAGCACCACCAGCAGCACCCAT
AGCACCGAGCACGAAGATGACCGAAATGGCGACTTCCCACCCCTATTAAT
GAGCCCCCACCGCTCCCACAGCGACGGCGGTGACGTCTTCCACGGCCACG
GCGGGAACACAACCCCTTGCAACGGCGGAGGGATGAAACGCTCCCGCTCT
TTCCTCGACTTGATAAATGAAAAAATCGAGCAAGAGCCAAGCACCAACCC
GGACACCGTCTCCCTATACCTCAAATTCATCGTTTCCTTGGACTTCCTCG
CTGTTGCGACCGTCGTCCCCCTTCTCCCCCAATATTTGGTCCGAACGGGC
TGTTGTAACGAGCAGCTAGCCTTCATTTCCTCTGCCTACAGCCTCGCCCA
GTTGGTAGGAGGGGTACTCCTAGGCTGGGTCTCCGACGGGATCATGACGC
GAAAAACAATCCTAATGACTTCCCTCTTGGGCTCCGCTGCATCCTATGGC
ATGATAGGCGTGTCCTCCTCCCGCCCACTCCTTATACTGTCCCGTATCGT
GGTTGGGTTGGTCAAACAAACCATGACAATGACTACGGCCTTGATTTCCG
ACCTCCCCCTCGACCGGTCCCGTCGGACCAAGCACATGTCCCACCTCACG
GCCGCCGTGACTGTCTCCTGGATTGTAGGCCCTGCCCTCGGGGGATACCT
CTTCTGGCTCTCCCCCTGCCTGCCCCCCCTCGTTGCTGCCGTCATATTCA
CCATTGCCGCCTTGCTCTGCTTGATAGGTGTCCCCAACCACCCCGACCCC
CCACCACCTGGCTTTTCCCCGCTTTCCACCTCCATCTCCTCGCCAGACCT
GCTCGGCATGTCTAATGGCAACAGTGGAAGTGGGTTTAAGTCCAAGAGTA
AGAGCTTCGGCACATTCTTGTCGACGCTTCGGAGCAACTTCAGGGAGGCG
TTCAATGACCCAACCATTATTAGAATAGTGGGGATAAGACTCCTCTACAG
CTTCACCATCATTTCCCTCATGCCCACCAATTTCGTGGGATATTTGGAGG
CGAGATATGGGCTCAAGAGCCATGAAGTCGCCTACTTGCATTCTTACCGC
GCAACGCTGTCGTTTTTAGCACAGACGTTTTTGGTGTCGGCGGTGGTGAA
ACACCATACGTTTTCGGAGGAAGCGACCGCGAGGGCCGCGATTGTGTTTG
GGGTTTTTCTCAAGTACTCCGAGGTGCTGAACCGCGATCGGTTGGTTTTC
TTATTTGTGACCACCCCTGCTATAGTCGGTGTTTTTTCTCTGTTCGATTG
TTCTTTGCAGGGAATTTATACAGACAGTATTCCAGCAGGGCACAGGGGGG
CTGCGCTAGGATCAATGTCGGCGTTGCAGTCGCTGGTTAAGGTTGCGGCG
CCTTTGTATGGGGGGGAGATTTTCCAACGAGTGGGTCATGAACGCCGACC
GGAGATTATCTTCATTCATTATGTGGTGTTAGCGACGGTGGTCTGGCTTG
TCTTTCCCCCTGGCCGGCACCGACCAAAGCAACATGAACAGCGCCTGCCC
CCGTCAGTGTCGACCGGCTCGTTATCACAGATTGTGGAAGGGAAGGAGGA
GGGAAATGCGCTTTATGGGAATGATGACATGAGCAGTAGCAGTAGTAGTG
AAGGTAGAAGTAGAGGGAGCAGCAGTACCAGTACCGGACTCGTCAGACGG
AATGTGTCTGCCCATCCCCTCCACGGCAACCCCTCCACTGCCTCACTCTC
TGACGCCGTGCCGGTCATGCGTCCCGCCCACGAACTCACCACTTTGACTG
ATGAGGCTATTGCTTCTGCTCCTGCTACTATTTCTTCCTCTTCGCGAGGC
GGCAACAGCAGTAGGGAGCCGGTGGCGATCCGGAGGGGAGGAATGACCAG
CCTTCCGAGTTCGGAGAGGCTGCATCCGATTAGGGGCAGGTTTGACAGGG
GAAGCAGGGTTAGGATTGGGCAAATATAGATAGAAAGGAGAGACGAAGGA
GGACGAGAGAGTCGGCACATGGAGAGGTAGGTTGGGCCGCACCAACTGCA
GCAACAGCAGCAACTGCAGCAAGTGTTCTGCCAAAGACTAGAATTCCCAC
TTATTTTATTCCTCACCTCGCAATCGTCAAGTCGCTTTAGTCGGAAGGGG
TAGGGAATAGGAGGGGAGGGAAAGATTATCTCACACACACTGTTTTCACC
ACAAAAACAAAGAAAGAAAGCGAAATCTAAAC

Coding sequence (CDS) from alignment at scaffold_21:253208..256339-

>mRNA_7758 ID=mRNA_7758|Name=jgi.p|Nanoce1779_2|599920|organism=Nannochloropsis oceanica|type=CDS|length=1881bp|location=Sequence derived from alignment at scaffold_21:253208..256339- (Nannochloropsis oceanica)
ATGAGCCCCCACCGCTCCCACAGCGACGGCGGTGACGTCTTCCACGGCCA
CGGCGGGAACACAACCCCTTGCAACGGCGGAGGGATGAAACGCTCCCGCT
CTTTCCTCGACTTGATAAATGAAAAAATCGAGCAAGAGCCAAGCACCAAC
CCGGACACCGTCTCCCTATACCTCAAATTCATCGTTTCCTTGGACTTCCT
CGCTGTTGCGACCGTCGTCCCCCTTCTCCCCCAATATTTGGTCCGAACGG
GCTGTTGTAACGAGCAGCTAGCCTTCATTTCCTCTGCCTACAGCCTCGCC
CAGTTGGTAGGAGGGGTACTCCTAGGCTGGGTCTCCGACGGGATCATGAC
GCGAAAAACAATCCTAATGACTTCCCTCTTGGGCTCCGCTGCATCCTATG
GCATGATAGGCGTGTCCTCCTCCCGCCCACTCCTTATACTGTCCCGTATC
GTGGTTGGGTTGGTCAAACAAACCATGACAATGACTACGGCCTTGATTTC
CGACCTCCCCCTCGACCGGTCCCGTCGGACCAAGCACATGTCCCACCTCA
CGGCCGCCGTGACTGTCTCCTGGATTGTAGGCCCTGCCCTCGGGGGATAC
CTCTTCTGGCTCTCCCCCTGCCTGCCCCCCCTCGTTGCTGCCGTCATATT
CACCATTGCCGCCTTGCTCTGCTTGATAGGTGTCCCCAACCACCCCGACC
CCCCACCACCTGGCTTTTCCCCGCTTTCCACCTCCATCTCCTCGCCAGAC
CTGCTCGGCATGTCTAATGGCAACAGTGGAAGTGGGTTTAAGTCCAAGAG
TAAGAGCTTCGGCACATTCTTGTCGACGCTTCGGAGCAACTTCAGGGAGG
CGTTCAATGACCCAACCATTATTAGAATAGTGGGGATAAGACTCCTCTAC
AGCTTCACCATCATTTCCCTCATGCCCACCAATTTCGTGGGATATTTGGA
GGCGAGATATGGGCTCAAGAGCCATGAAGTCGCCTACTTGCATTCTTACC
GCGCAACGCTGTCGTTTTTAGCACAGACGTTTTTGGTGTCGGCGGTGGTG
AAACACCATACGTTTTCGGAGGAAGCGACCGCGAGGGCCGCGATTGTGTT
TGGGGTTTTTCTCAAGTACTCCGAGGTGCTGAACCGCGATCGGTTGGTTT
TCTTATTTGTGACCACCCCTGCTATAGTCGGTGTTTTTTCTCTGTTCGAT
TGTTCTTTGCAGGGAATTTATACAGACAGTATTCCAGCAGGGCACAGGGG
GGCTGCGCTAGGATCAATGTCGGCGTTGCAGTCGCTGGTTAAGGTTGCGG
CGCCTTTGTATGGGGGGGAGATTTTCCAACGAGTGGGTCATGAACGCCGA
CCGGAGATTATCTTCATTCATTATGTGGTGTTAGCGACGGTGGTCTGGCT
TGTCTTTCCCCCTGGCCGGCACCGACCAAAGCAACATGAACAGCGCCTGC
CCCCGTCAGTGTCGACCGGCTCGTTATCACAGATTGTGGAAGGGAAGGAG
GAGGGAAATGCGCTTTATGGGAATGATGACATGAGCAGTAGCAGTAGTAG
TGAAGGTAGAAGTAGAGGGAGCAGCAGTACCAGTACCGGACTCGTCAGAC
GGAATGTGTCTGCCCATCCCCTCCACGGCAACCCCTCCACTGCCTCACTC
TCTGACGCCGTGCCGGTCATGCGTCCCGCCCACGAACTCACCACTTTGAC
TGATGAGGCTATTGCTTCTGCTCCTGCTACTATTTCTTCCTCTTCGCGAG
GCGGCAACAGCAGTAGGGAGCCGGTGGCGATCCGGAGGGGAGGAATGACC
AGCCTTCCGAGTTCGGAGAGGCTGCATCCGATTAGGGGCAGGTTTGACAG
GGGAAGCAGGGTTAGGATTGGGCAAATATAG

Synonyms

Publications