jgi.p|Nanoce1779_2|607977, mRNA_9063 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|607977
Unique NamemRNA_9063
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1027
Alignment locationscaffold_40:36944..38655 -

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Properties
Property NameValue
TranscriptId608063
TrackFilteredModels2
ProteinId607977
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_40supercontigscaffold_40:36944..38655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607977gene_9063Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607977mRNA_9063-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9063CDS_9063Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9063 ID=mRNA_9063|Name=jgi.p|Nanoce1779_2|607977|organism=Nannochloropsis oceanica|type=mRNA|length=1027bp
ACAGGTGTGCTCCTCGATAAAAGCACCATGGGTTACGTCCTTGTCGCCAT
TGGGTATGTCGCAGGCTACCTGGCCATCCTTTTTCAAGCCATTTGTATTG
CATGTGGGTTGTACTACGCCGCTGAGCTGGCCGAGGAGTACGCGTCTGCC
ACCAAGCGTATCATCGCCTACTCCGTCCTTGCCGTCGTCGCCCTGCACGG
CCTCCTACTTGTGGAGTCTTTCCCCATCTTCCTTCTGGCCGGCGGTATTG
CCTGTCATGCCGTTTATGGCTGGCTGATTATAGACTTCCCCAACGTGGAG
GTTTTTAGCCTTAAGTTTTTGTTCGCCCTGGGCGCCCTGTGCGCTGACCA
CTACATTTGGTTCCAGTACCTTCAAAGCCGCCCCCCCACCATCAAGAGCG
CTTTCCAGAGTATGGCAATCTTTTTCCTCCTCGTCTGGTTCGTGCCTTTT
GCGCTCTTTGTCTCCCTCTCAGTAAATGACAACGTCCTGCCTTCCATAGG
CTCTTCTGCGACTTCCGGCTACTCAAGCACCTCCAGTGGTACGTGTCATC
TTACCATTTTTTTCTATCATTTGAAAAAAACTTCTTGTAATGAGCTTTCG
AGGAGACAAAGCTGCTGCAAACAATCCACGCTCCGTTTTCTTTTTTATGG
TCAATCATTCACGCATATGCAAACATACAATGCCACCCAACGACCCATCG
CAGATGCCATGTATTACTCGGACTATTCTACCGCCTCTGGATCCCTCTCT
ATGTCAGGCTCTGGTTCCTCCCTCTCCTACAGCAAGGGCACCAGCAAGAA
CACTACCAGAAAGGGCGGCATCCGAGGCATGCTCGACTCGCTCAACTCCC
ACATTGCCCCTGGCATTGTCAAAAATGTTTAGATAGCGAGTAACACGGAT
TGGAGAAAGAAATTAAAAGAGAAAATGTAGAAACCCCTACAAGTACTGCT
CAGGAATGTTTCTCAAATTCTGTACATGTGTGATACTCTGTGCGTAGCGT
TTGTGGCAGCAGCCGTGTAGCAGTACT
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protein sequence of jgi.p|Nanoce1779_2|607977

>mRNA_9063-protein ID=mRNA_9063-protein|Name=jgi.p|Nanoce1779_2|607977|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MGYVLVAIGYVAGYLAILFQAICIACGLYYAAELAEEYASATKRIIAYSV
LAVVALHGLLLVESFPIFLLAGGIACHAVYGWLIIDFPNVEVFSLKFLFA
LGALCADHYIWFQYLQSRPPTIKSAFQSMAIFFLLVWFVPFALFVSLSVN
DNVLPSIGSSATSGYSSTSSGTCHLTIFFYHLKKTSCNELSRRQSCCKQS
TLRFLFYGQSFTHMQTYNATQRPIADAMYYSDYSTASGSLSMSGSGSSLS
YSKGTSKNTTRKGGIRGMLDSLNSHIAPGIVKNV*
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mRNA from alignment at scaffold_40:36944..38655-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9063 ID=mRNA_9063|Name=jgi.p|Nanoce1779_2|607977|organism=Nannochloropsis oceanica|type=mRNA|length=1712bp|location=Sequence derived from alignment at scaffold_40:36944..38655- (Nannochloropsis oceanica)
ACAGGTGTGCTCCTCGATAAAAGCACCATGGGTTACGTCCTTGTCGCCAT
TGGGTATGTCGCAGGCTACCTGGCCATCCTTTTTCAAGCCATTTGTATTG
GTACGTAGAGCTTCAAGTGGGCTCCTCCTTGTTCTATCTTTAAAGGGTTA
GTGGGTTGTACCGCCAGCGAAATTCAGAGGGTGTGGGCAAGTATGGCAAA
CAGGCGTTAGACTACTACGCACACCTGCTACTCAAGACACTAGTTTGGCT
CTAAATGTTAAGTGGTTCGGCAAGCCAGATTCTAAAGCGTGAGCTAAAGC
ATCGACAGGGCCTAAATCGCCGCTGACATCTCGCCACGCCCAAGCTCAGG
TGCGAAACACACATAGACGTGCAAACCTCACTCACGTACTATACACGCAC
ATAAACACAATATACACCAGCATGTGGGTTGTACTACGCCGCTGAGCTGG
CCGAGGAGTACGCGTCTGCCACCAAGCGTATCATCGCCTACTCCGTCCTT
GCCGTCGTCGCCCTGCACGGCCTCCTACTTGTGGAGTCTTTCCCCATCTT
CCTTCTGGCCGGCGGTATTGCCTGTCATGCCGTTTATGGCTGGCTGATTA
TAGACTTCCCCAACGTGGAGGTTTTTAGCCTTAAGTTTTTGTTCGCCCTG
GGCGCCCTGTGCGCTGACCACTACATTTGGTTCCAGTACCTTCAAAGCCG
CCCCCCCACCATCAAGAGCGCTTTCCAGAGTATGGTGCGTTTGATAGTCA
AGGGTGACTGGGATGGGATGGATGCAGGGGAAAATGGGTCTGTTTGAGAC
GTTTGCGATGAAAGAGGGGCTGGCTTCTGAAGGGGGGGTTACAGTGCTGG
CATCCGTGGCGGTGATACCGAGAGTAAGGAATCAGATTTCTCACTTTCGT
GTTTCACAAGCTTCTACTTTTCTCGTGTGTCGCTTTGATCTCCTGTGCGG
GACGAGCGAGGAATGAATGGAGGGTCGGACATTTGGATTCGAGAGGCTGC
ATCGAGTTAGGGTGGGAGGAGGCATATGCTTACCCTCCTCCAAAGGACAT
GTGACCTGGCACTCATCCATCTCCACATTTTCTAATGTCATATTTCTAGG
CAATCTTTTTCCTCCTCGTCTGGTTCGTGCCTTTTGCGCTCTTTGTCTCC
CTCTCAGTAAATGACAACGTCCTGCCTTCCATAGGCTCTTCTGCGACTTC
CGGCTACTCAAGCACCTCCAGTGGTACGTGTCATCTTACCATTTTTTTCT
ATCATTTGAAAAAAACTTCTTGTAATGAGCTTTCGAGGAGACAAAGCTGC
TGCAAACAATCCACGCTCCGTTTTCTTTTTTATGGTCAATCATTCACGCA
TATGCAAACATACAATGCCACCCAACGACCCATCGCAGATGCCATGTATT
ACTCGGACTATTCTACCGCCTCTGGATCCCTCTCTATGTCAGGCTCTGGT
TCCTCCCTCTCCTACAGCAAGGGCACCAGCAAGAACACTACCAGAAAGGG
CGGCATCCGAGGCATGCTCGACTCGCTCAACTCCCACATTGCCCCTGGCA
TTGTCAAAAATGTTTAGATAGCGAGTAACACGGATTGGAGAAAGAAATTA
AAAGAGAAAATGTAGAAACCCCTACAAGTACTGCTCAGGAATGTTTCTCA
AATTCTGTACATGTGTGATACTCTGTGCGTAGCGTTTGTGGCAGCAGCCG
TGTAGCAGTACT
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Coding sequence (CDS) from alignment at scaffold_40:36944..38655-

>mRNA_9063 ID=mRNA_9063|Name=jgi.p|Nanoce1779_2|607977|organism=Nannochloropsis oceanica|type=CDS|length=2565bp|location=Sequence derived from alignment at scaffold_40:36944..38655- (Nannochloropsis oceanica)
GCAATCTTTTTCCTCCTCGTCTGGTTCGTGCCTTTTGCGCTCTTTGTCTC
CCTCTCAGTAAATGACAACGTCCTGCCTTCCATAGGCTCTTCTGCGACTT
CCGGCTACTCAAGCACCTCCAGTGGTACGTGTCATCTTACCATTTTTTTC
TATCATTTGAAAAAAACTTCTTGTAATGAGCTTTCGAGGAGACAAAGCTG
CTGCAAACAATCCACGCTCCGTTTTCTTTTTTATGGTCAATCATTCACGC
ATATGCAAACATACAATGCCACCCAACGACCCATCGCAGATGCCATGTAT
TACTCGGACTATTCTACCGCCTCTGGATCCCTCTCTATGTCAGGCTCTGG
TTCCTCCCTCTCCTACAGCAAGGGCACCAGCAAGAACACTACCAGAAAGG
GCGGCATCCGAGGCATGCTCGACTCGCTCAACTCCCACATTGCCCCTGGC
ATTGTCAAAAATGTTTAGCATGTGGGTTGTACTACGCCGCTGAGCTGGCC
GAGGAGTACGCGTCTGCCACCAAGCGTATCATCGCCTACTCCGTCCTTGC
CGTCGTCGCCCTGCACGGCCTCCTACTTGTGGAGTCTTTCCCCATCTTCC
TTCTGGCCGGCGGTATTGCCTGTCATGCCGTTTATGGCTGGCTGATTATA
GACTTCCCCAACGTGGAGGTTTTTAGCCTTAAGTTTTTGTTCGCCCTGGG
CGCCCTGTGCGCTGACCACTACATTTGGTTCCAGTACCTTCAAAGCCGCC
CCCCCACCATCAAGAGCGCTTTCCAGAGTATGATGGGTTACGTCCTTGTC
GCCATTGGGTATGTCGCAGGCTACCTGGCCATCCTTTTTCAAGCCATTTG
TATTGGCAATCTTTTTCCTCCTCGTCTGGTTCGTGCCTTTTGCGCTCTTT
GTCTCCCTCTCAGTAAATGACAACGTCCTGCCTTCCATAGGCTCTTCTGC
GACTTCCGGCTACTCAAGCACCTCCAGTGGTACGTGTCATCTTACCATTT
TTTTCTATCATTTGAAAAAAACTTCTTGTAATGAGCTTTCGAGGAGACAA
AGCTGCTGCAAACAATCCACGCTCCGTTTTCTTTTTTATGGTCAATCATT
CACGCATATGCAAACATACAATGCCACCCAACGACCCATCGCAGATGCCA
TGTATTACTCGGACTATTCTACCGCCTCTGGATCCCTCTCTATGTCAGGC
TCTGGTTCCTCCCTCTCCTACAGCAAGGGCACCAGCAAGAACACTACCAG
AAAGGGCGGCATCCGAGGCATGCTCGACTCGCTCAACTCCCACATTGCCC
CTGGCATTGTCAAAAATGTTTAGCATGTGGGTTGTACTACGCCGCTGAGC
TGGCCGAGGAGTACGCGTCTGCCACCAAGCGTATCATCGCCTACTCCGTC
CTTGCCGTCGTCGCCCTGCACGGCCTCCTACTTGTGGAGTCTTTCCCCAT
CTTCCTTCTGGCCGGCGGTATTGCCTGTCATGCCGTTTATGGCTGGCTGA
TTATAGACTTCCCCAACGTGGAGGTTTTTAGCCTTAAGTTTTTGTTCGCC
CTGGGCGCCCTGTGCGCTGACCACTACATTTGGTTCCAGTACCTTCAAAG
CCGCCCCCCCACCATCAAGAGCGCTTTCCAGAGTATGATGGGTTACGTCC
TTGTCGCCATTGGGTATGTCGCAGGCTACCTGGCCATCCTTTTTCAAGCC
ATTTGTATTGGCAATCTTTTTCCTCCTCGTCTGGTTCGTGCCTTTTGCGC
TCTTTGTCTCCCTCTCAGTAAATGACAACGTCCTGCCTTCCATAGGCTCT
TCTGCGACTTCCGGCTACTCAAGCACCTCCAGTGGTACGTGTCATCTTAC
CATTTTTTTCTATCATTTGAAAAAAACTTCTTGTAATGAGCTTTCGAGGA
GACAAAGCTGCTGCAAACAATCCACGCTCCGTTTTCTTTTTTATGGTCAA
TCATTCACGCATATGCAAACATACAATGCCACCCAACGACCCATCGCAGA
TGCCATGTATTACTCGGACTATTCTACCGCCTCTGGATCCCTCTCTATGT
CAGGCTCTGGTTCCTCCCTCTCCTACAGCAAGGGCACCAGCAAGAACACT
ACCAGAAAGGGCGGCATCCGAGGCATGCTCGACTCGCTCAACTCCCACAT
TGCCCCTGGCATTGTCAAAAATGTTTAGCATGTGGGTTGTACTACGCCGC
TGAGCTGGCCGAGGAGTACGCGTCTGCCACCAAGCGTATCATCGCCTACT
CCGTCCTTGCCGTCGTCGCCCTGCACGGCCTCCTACTTGTGGAGTCTTTC
CCCATCTTCCTTCTGGCCGGCGGTATTGCCTGTCATGCCGTTTATGGCTG
GCTGATTATAGACTTCCCCAACGTGGAGGTTTTTAGCCTTAAGTTTTTGT
TCGCCCTGGGCGCCCTGTGCGCTGACCACTACATTTGGTTCCAGTACCTT
CAAAGCCGCCCCCCCACCATCAAGAGCGCTTTCCAGAGTATGATGGGTTA
CGTCCTTGTCGCCATTGGGTATGTCGCAGGCTACCTGGCCATCCTTTTTC
AAGCCATTTGTATTG
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Synonyms
Publications