jgi.p|Nanoce1779_2|607989, mRNA_9066 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|607989
Unique Name	mRNA_9066
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2679
Alignment location	scaffold_40:45166..47844 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	608075
Track	FilteredModels2
ProteinId	607989

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_40	supercontig	scaffold_40:45166..47844 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|607989	gene_9066	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|607989	mRNA_9066-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9066	CDS_9066	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_40:45166..47844+
coding sequence from alignment at scaffold_40:45166..47844+

mRNA sequence

>mRNA_9066 ID=mRNA_9066|Name=jgi.p|Nanoce1779_2|607989|organism=Nannochloropsis oceanica|type=mRNA|length=2679bp
AGAGGCCGACGATTTCATGTCGCCCGACAGTCCACCACCACCGCCGCTCA
ACAATCCGGCCATCTTTCTCAATGGCATCGACTGCATGACCATCGGACAT
TACGCCCTCCCGCCCCTGGGGGCTCAAGACGTGCGCATCGCAGTTAAAGC
CGTGGGTATATGTGCCTCGGACGTACATTACTTGCGCAAAGGCCGCATTG
CTGACTTCATCGTCAAAGAACCCATGGTGATAGGCCACGAGAGCGCGGGA
GAGGTGGTAGCCGTGGGGGAGGCCATCACAGCTCTCGCCGTAGGAGATCG
CGTGGCAATGGAACCAGGCATATCCTGCCAGCGATGCAAGCCATGTAAAA
CCGGAGCTTATAATTTATGTCCGGACATGAAGTTCTTTGCGACCCCTCCC
GTGCATGGTTCCCTCGCGCACTTTGTCCACCACCCTGCGGACCTTTGCTT
CCCCTTGCCCAGCCCCTTATCCTATGAAGATGGTGCCATGTGTGAGCCAC
TTGCCGTGGGTGTGTATGCCTGCATCAAGGCCAATATTCGACCAGGGATG
CGTGTACTCATCACAGGGGCGGGACCCATTGGCTTGGTCACTCTTTTGAG
CGCCCGTGCATTTGGGGCCTCAGAGATAATAATTACAGATGTGGATGAAC
GACGACTTGCTATTGCTGCTGCTACCGCACCAGGGGTGAAAGCCGTGTGC
GTGGCAGGGAAGATCACAGCTGAAGTGCTAGTAATGATCGGAGGGCCAGC
CTCTGTGGATGTCACGATGGACTGCGCAGGTTTTGAGACCACTGTGGAGG
TCGCATTGGAGGCAACGACCAACGGAGGAAAAGTATTATTGATTGGGATG
GGCTGTAGCACCCGCACTATGCATGTGCCGTTGCTATCTGCCGCTGTTAG
AGAAGTGGACTTACTTGGGAGTTTCAGGTATCGCAATGTATATCCTACGT
GTTTGTCTCTCATAGAATCGGGGAGGATAGATGTGAGGAAACTGATTACG
CACCGTGTGGACCTTTCAGGGGAGGGGCGTTTCACGGCGGAGCTGGTGAA
AGAGGGCTTTGCGTTGTCGGAAAAAGGGGGAGATGTGGTGAAAGTGATGT
TCAATCTGTAATTAGGACGGGATGAGAAAGGAAGAGGCCTGTAAAGGTAA
TCGAAGCGTACATAAACGCGTAATATTTTTTTCAGAAGCAATGAGAGAAG
TAAAGAAGCTATTTGAAATTGCAGATTATGTATGTAAATAGAAAAGCAGC
AAGCCAGTGATATGGTCGACATGAGAGATTAGAGAAGAGGAGCACAGCGG
AGAAGTGCCTTGCATCACCCTGATCAACCCTTGACTTGAAGTTATACCGC
TTGGTGTGTGTAATTGAACGATATGGAGTCTTAACATTTTTTGATTGTTT
GAGGATAAGATTAATTCGAAAATGCAAAAGCGATTAATTCTTCCATACGA
TCTCGGAAAGAGTAAGATACTACTACCCTCTCACTTATTTATCTTTATTT
TGAACCCAGACCTTCTAATTACATGAAAGTCTCTGTGCGAAGTCTCCAAC
TTCCTAGCATAGCCTGGAAATGTTATTTTTGTTAAAGTACAAGTTGATGA
TGCGGCAAAGCTTGCGCTGAGATAAAGTAAGAACTATTTCCTATCATTGA
GACAAATCTTTCACCAACCCTTGCTTTGCTCTCTTCTTTCACCAGCGATC
TGTGTCCCTCCATTTCCTCCACCACCACCACTATCACCATCACCAACCAC
CCAAGTTTTGAGTACAGAATACGAACCGGCGAAAATCATCCTCGGGAGAC
TTAGTGGACTTTCTCAACTTAAAGTCTCCGGGTGATGTCATTGAAGTTGT
TCTACTATTCTACTACGTCCAAATTAATGTAAATTATATTTTCCCAGTTC
CAGGCATTTTTATTTCATTGAAATTACTGCATACGATTCAAATTCGCATA
ACGGCGCTTTATAAAGCTCTGGGCAAACGCATGCGCCAAAGGCCGCATTA
GGTCCCAGGCTTCGCGCAAGACCTCTTCCTTGTGATCCTGAAAGTCCTGT
TGATGGGGCGTCCACAAAAGCCTTTTGTTCTCCTCTTGAGCAGGAAGCAG
GACTGAAAATTTGTTCGTCACGGATGAAGAAAAACGCCACATGGCCGAAC
GAAGTAAAGCCTTCACAACCTCGTCTTCAAATTCCTCCCGCCCCTCTTCC
CCGGCTTTATTCCTACCCAGTCTTCCCACACAAGCCATCCGCCGTTTCTC
CTCGGACGACAGGCGAGATTGATATATCTCATCCACGACTCCACTCACGT
GGAAGTCAATTGCAGACCAAGGTATGTCTTCCTCGTTTTCCCCGCCCGAT
GCTATATTTAACCGCCAGACTGCTGGCCAGTTTTCCAAGGGAGGAGCTAC
TGCAACAGCGCTAGCAGTTGCAGAAGAAGAGGCAGCAGGAACAGCTGCTG
GAAGAACAAGATCAGCAGCATCTGCCATCATTTCTCCAGGGATTGTTACC
AAGGAGGGGAGCCAGGATTGAGGTAGAGGCCGGCCATGGGCTTGGATCTG
CCAAATCAACCACCGACACCAGGGACGGGGAGAGTCAAGGTATTGCCTTA
ATTTCTTCTTGCTTACGTAGTCGAGTGAAGTAAGAGAAAGGAGACTGAAA
AGACCGTGGTCACTGCATTTGTTGTTGTT

protein sequence of jgi.p|Nanoce1779_2|607989

>mRNA_9066-protein ID=mRNA_9066-protein|Name=jgi.p|Nanoce1779_2|607989|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MSPDSPPPPPLNNPAIFLNGIDCMTIGHYALPPLGAQDVRIAVKAVGICA
SDVHYLRKGRIADFIVKEPMVIGHESAGEVVAVGEAITALAVGDRVAMEP
GISCQRCKPCKTGAYNLCPDMKFFATPPVHGSLAHFVHHPADLCFPLPSP
LSYEDGAMCEPLAVGVYACIKANIRPGMRVLITGAGPIGLVTLLSARAFG
ASEIIITDVDERRLAIAAATAPGVKAVCVAGKITAEVLVMIGGPASVDVT
MDCAGFETTVEVALEATTNGGKVLLIGMGCSTRTMHVPLLSAAVREVDLL
GSFRYRNVYPTCLSLIESGRIDVRKLITHRVDLSGEGRFTAELVKEGFAL
SEKGGDVVKVMFNL*

mRNA from alignment at scaffold_40:45166..47844+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9066 ID=mRNA_9066|Name=jgi.p|Nanoce1779_2|607989|organism=Nannochloropsis oceanica|type=mRNA|length=2679bp|location=Sequence derived from alignment at scaffold_40:45166..47844+ (Nannochloropsis oceanica)
AGAGGCCGACGATTTCATGTCGCCCGACAGTCCACCACCACCGCCGCTCA
ACAATCCGGCCATCTTTCTCAATGGCATCGACTGCATGACCATCGGACAT
TACGCCCTCCCGCCCCTGGGGGCTCAAGACGTGCGCATCGCAGTTAAAGC
CGTGGGTATATGTGCCTCGGACGTACATTACTTGCGCAAAGGCCGCATTG
CTGACTTCATCGTCAAAGAACCCATGGTGATAGGCCACGAGAGCGCGGGA
GAGGTGGTAGCCGTGGGGGAGGCCATCACAGCTCTCGCCGTAGGAGATCG
CGTGGCAATGGAACCAGGCATATCCTGCCAGCGATGCAAGCCATGTAAAA
CCGGAGCTTATAATTTATGTCCGGACATGAAGTTCTTTGCGACCCCTCCC
GTGCATGGTTCCCTCGCGCACTTTGTCCACCACCCTGCGGACCTTTGCTT
CCCCTTGCCCAGCCCCTTATCCTATGAAGATGGTGCCATGTGTGAGCCAC
TTGCCGTGGGTGTGTATGCCTGCATCAAGGCCAATATTCGACCAGGGATG
CGTGTACTCATCACAGGGGCGGGACCCATTGGCTTGGTCACTCTTTTGAG
CGCCCGTGCATTTGGGGCCTCAGAGATAATAATTACAGATGTGGATGAAC
GACGACTTGCTATTGCTGCTGCTACCGCACCAGGGGTGAAAGCCGTGTGC
GTGGCAGGGAAGATCACAGCTGAAGTGCTAGTAATGATCGGAGGGCCAGC
CTCTGTGGATGTCACGATGGACTGCGCAGGTTTTGAGACCACTGTGGAGG
TCGCATTGGAGGCAACGACCAACGGAGGAAAAGTATTATTGATTGGGATG
GGCTGTAGCACCCGCACTATGCATGTGCCGTTGCTATCTGCCGCTGTTAG
AGAAGTGGACTTACTTGGGAGTTTCAGGTATCGCAATGTATATCCTACGT
GTTTGTCTCTCATAGAATCGGGGAGGATAGATGTGAGGAAACTGATTACG
CACCGTGTGGACCTTTCAGGGGAGGGGCGTTTCACGGCGGAGCTGGTGAA
AGAGGGCTTTGCGTTGTCGGAAAAAGGGGGAGATGTGGTGAAAGTGATGT
TCAATCTGTAATTAGGACGGGATGAGAAAGGAAGAGGCCTGTAAAGGTAA
TCGAAGCGTACATAAACGCGTAATATTTTTTTCAGAAGCAATGAGAGAAG
TAAAGAAGCTATTTGAAATTGCAGATTATGTATGTAAATAGAAAAGCAGC
AAGCCAGTGATATGGTCGACATGAGAGATTAGAGAAGAGGAGCACAGCGG
AGAAGTGCCTTGCATCACCCTGATCAACCCTTGACTTGAAGTTATACCGC
TTGGTGTGTGTAATTGAACGATATGGAGTCTTAACATTTTTTGATTGTTT
GAGGATAAGATTAATTCGAAAATGCAAAAGCGATTAATTCTTCCATACGA
TCTCGGAAAGAGTAAGATACTACTACCCTCTCACTTATTTATCTTTATTT
TGAACCCAGACCTTCTAATTACATGAAAGTCTCTGTGCGAAGTCTCCAAC
TTCCTAGCATAGCCTGGAAATGTTATTTTTGTTAAAGTACAAGTTGATGA
TGCGGCAAAGCTTGCGCTGAGATAAAGTAAGAACTATTTCCTATCATTGA
GACAAATCTTTCACCAACCCTTGCTTTGCTCTCTTCTTTCACCAGCGATC
TGTGTCCCTCCATTTCCTCCACCACCACCACTATCACCATCACCAACCAC
CCAAGTTTTGAGTACAGAATACGAACCGGCGAAAATCATCCTCGGGAGAC
TTAGTGGACTTTCTCAACTTAAAGTCTCCGGGTGATGTCATTGAAGTTGT
TCTACTATTCTACTACGTCCAAATTAATGTAAATTATATTTTCCCAGTTC
CAGGCATTTTTATTTCATTGAAATTACTGCATACGATTCAAATTCGCATA
ACGGCGCTTTATAAAGCTCTGGGCAAACGCATGCGCCAAAGGCCGCATTA
GGTCCCAGGCTTCGCGCAAGACCTCTTCCTTGTGATCCTGAAAGTCCTGT
TGATGGGGCGTCCACAAAAGCCTTTTGTTCTCCTCTTGAGCAGGAAGCAG
GACTGAAAATTTGTTCGTCACGGATGAAGAAAAACGCCACATGGCCGAAC
GAAGTAAAGCCTTCACAACCTCGTCTTCAAATTCCTCCCGCCCCTCTTCC
CCGGCTTTATTCCTACCCAGTCTTCCCACACAAGCCATCCGCCGTTTCTC
CTCGGACGACAGGCGAGATTGATATATCTCATCCACGACTCCACTCACGT
GGAAGTCAATTGCAGACCAAGGTATGTCTTCCTCGTTTTCCCCGCCCGAT
GCTATATTTAACCGCCAGACTGCTGGCCAGTTTTCCAAGGGAGGAGCTAC
TGCAACAGCGCTAGCAGTTGCAGAAGAAGAGGCAGCAGGAACAGCTGCTG
GAAGAACAAGATCAGCAGCATCTGCCATCATTTCTCCAGGGATTGTTACC
AAGGAGGGGAGCCAGGATTGAGGTAGAGGCCGGCCATGGGCTTGGATCTG
CCAAATCAACCACCGACACCAGGGACGGGGAGAGTCAAGGTATTGCCTTA
ATTTCTTCTTGCTTACGTAGTCGAGTGAAGTAAGAGAAAGGAGACTGAAA
AGACCGTGGTCACTGCATTTGTTGTTGTT

Coding sequence (CDS) from alignment at scaffold_40:45166..47844+

>mRNA_9066 ID=mRNA_9066|Name=jgi.p|Nanoce1779_2|607989|organism=Nannochloropsis oceanica|type=CDS|length=1095bp|location=Sequence derived from alignment at scaffold_40:45166..47844+ (Nannochloropsis oceanica)
ATGTCGCCCGACAGTCCACCACCACCGCCGCTCAACAATCCGGCCATCTT
TCTCAATGGCATCGACTGCATGACCATCGGACATTACGCCCTCCCGCCCC
TGGGGGCTCAAGACGTGCGCATCGCAGTTAAAGCCGTGGGTATATGTGCC
TCGGACGTACATTACTTGCGCAAAGGCCGCATTGCTGACTTCATCGTCAA
AGAACCCATGGTGATAGGCCACGAGAGCGCGGGAGAGGTGGTAGCCGTGG
GGGAGGCCATCACAGCTCTCGCCGTAGGAGATCGCGTGGCAATGGAACCA
GGCATATCCTGCCAGCGATGCAAGCCATGTAAAACCGGAGCTTATAATTT
ATGTCCGGACATGAAGTTCTTTGCGACCCCTCCCGTGCATGGTTCCCTCG
CGCACTTTGTCCACCACCCTGCGGACCTTTGCTTCCCCTTGCCCAGCCCC
TTATCCTATGAAGATGGTGCCATGTGTGAGCCACTTGCCGTGGGTGTGTA
TGCCTGCATCAAGGCCAATATTCGACCAGGGATGCGTGTACTCATCACAG
GGGCGGGACCCATTGGCTTGGTCACTCTTTTGAGCGCCCGTGCATTTGGG
GCCTCAGAGATAATAATTACAGATGTGGATGAACGACGACTTGCTATTGC
TGCTGCTACCGCACCAGGGGTGAAAGCCGTGTGCGTGGCAGGGAAGATCA
CAGCTGAAGTGCTAGTAATGATCGGAGGGCCAGCCTCTGTGGATGTCACG
ATGGACTGCGCAGGTTTTGAGACCACTGTGGAGGTCGCATTGGAGGCAAC
GACCAACGGAGGAAAAGTATTATTGATTGGGATGGGCTGTAGCACCCGCA
CTATGCATGTGCCGTTGCTATCTGCCGCTGTTAGAGAAGTGGACTTACTT
GGGAGTTTCAGGTATCGCAATGTATATCCTACGTGTTTGTCTCTCATAGA
ATCGGGGAGGATAGATGTGAGGAAACTGATTACGCACCGTGTGGACCTTT
CAGGGGAGGGGCGTTTCACGGCGGAGCTGGTGAAAGAGGGCTTTGCGTTG
TCGGAAAAAGGGGGAGATGTGGTGAAAGTGATGTTCAATCTGTAA

Synonyms

Publications