jgi.p|Nanoce1779_2|610418, mRNA_10206 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610418
Unique NamemRNA_10206
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length874
Alignment locationscaffold_50:3086..4500 -

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Properties
Property NameValue
TranscriptId610504
TrackFilteredModels2
ProteinId610418
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_50supercontigscaffold_50:3086..4500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610418gene_10206Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610418mRNA_10206-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10206CDS_10206Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10206 ID=mRNA_10206|Name=jgi.p|Nanoce1779_2|610418|organism=Nannochloropsis oceanica|type=mRNA|length=874bp
CAGGTTCAATCTCGCTCTCTGCCCCTCCAGCGTAGCTCACAAGAAAATTA
GATGACGACCCCCGCGGCCGTCACCACTACTACCGACAACAATGAGAGCA
GCAGCAATAGCAGCAGTGGGAGCAACATTGCGCCAACTGCCCGTACCAGC
AGCACCACCATATCTCCCTTCCCTACGCCCGAGTTTCTCGAGGCCGCCGC
TGTGCGGGATCTGATCCTGGCCCAAAGGGACCAGGCCGCAAGCCAACGGA
AGGTTCAAATTGTGGATGTCCGAGGCTCGGATTTTTCCGAGGGCAAATTA
CCTGGGGCCCTCAACGTGGCCAGTGAAGGGTTGAAGGACATGGACCGCGT
CGATAAGCTTGTGGAGGAGCTAATGGTAGGGACGGAGGGAAGGAAGGGCG
GCAACGGATGATGACAGACAGAAATTTCGGTGTCGCTTTCCTCGGTGTCT
CACATCTTTTGTTACCTCTCCCTCCCTCTCTTCTTCCCTCCTTCTCTCCT
TCCCTCCTCCCTTCAATTTACAAGGACAAGGAGATGGTCATCTTCCACTG
TGGCAAGAGCCATCAACGCGGTCCACAATCTGCCGCACGTTTCCTCTCCC
GCCTTCAGGCTGCCACTGCTGCTGCTGTAGCTGCTGGTACGTGTGTTTTT
CCCCTCTCCGCCTTCTCTCTTTCTTTTTTCCCCCGGGAGAGAAGGGGGGG
GGGGCTTGCCGCAATATCTCCTTTTCCTCTCTTCTCTCTGCTTCCTTCCT
TCCTTTTATGTCCTCTTACTTTGTCCCTGATGACTCATCGTTCCACTGTA
CGACCCTTCCCTCCCTCCCTCCCTCCCTGCCAGGTAAGGACGTGGGACCC
AAAGTCTATGTTTTGAAGGGAGGG
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protein sequence of jgi.p|Nanoce1779_2|610418

>mRNA_10206-protein ID=mRNA_10206-protein|Name=jgi.p|Nanoce1779_2|610418|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MMTDRNFGVAFLGVSHLLLPLPPSLLPSFSPSLLPSIYKDKEMVIFHCGK
SHQRGPQSAARFLSRLQAATAAAVAAGTCVFPLSAFSLSFFPRERRGGGL
AAISPFPLFSLLPSFLLCPLTLSLMTHRSTVRPFPPSLPPCQVRTWDPKS
MF*
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mRNA from alignment at scaffold_50:3086..4500-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10206 ID=mRNA_10206|Name=jgi.p|Nanoce1779_2|610418|organism=Nannochloropsis oceanica|type=mRNA|length=1415bp|location=Sequence derived from alignment at scaffold_50:3086..4500- (Nannochloropsis oceanica)
CAGGTTCAATCTCGCTCTCTGCCCCTCCAGCGTAGCTCACAAGAAAATTA
GATGACGACCCCCGCGGCCGTCACCACTACTACCGACAACAATGAGAGCA
GCAGCAATAGCAGCAGTGGGAGCAACATTGCGCCAACTGCCCGTACCAGC
AGCACCACCATATCTCCCTTCCCTACGCCCGAGTTTCTCGAGGCCGCCGC
TGTGCGGGATCTGATCCTGGGTATGTCCTTTCTTAATTGCTTTGGTTCAA
GCAAAGCTCGTCCAACCAGACTTCACTCCATGCATCCCTTCGGTTTCACT
TTCCTTTCTTCCTTTCCTGCTGCAGTGAATTGAATCGCAATCCTTTCCTT
CCCGCCCTCCCTCCCTCCCCTCTTCCCTCTCGCCCTCCCTCCCTCCCTCC
CTCTCACGACAGCCCAAAGGGACCAGGCCGCAAGCCAACGGAAGGTTCAA
ATTGTGGATGTCCGAGGCTCGGATTTTTCCGGTAAAGAGGAAGGGAGGGA
GGGAGGGCGAGAGGGAAGAGGGAAGGGAGGGAGGGATTGAATGGAAGATG
GCCTACGATACCTACATTATGTAGCTCACTTCTCCTCCCTCCCTCCTTCC
CTTCCTTCCTCTCTCCCTTTCTTCCCTCCTTTCGAAAGGTCAAGTCCAGA
ATCTCTGACTTTCCCTCCACAAAACCCCACCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCTTGTTCAGAGGGCAAATTACCTGGGGCCCTCAACGTGGCCA
GTGAAGGGTTGAAGGACATGGACCGCGTCGATAAGCTTGTGGAGGAGCTA
ATGGTAGGGACGGAGGGAAGGAAGGGCGGCAACGGATGATGACAGACAGA
AATTTCGGTGTCGCTTTCCTCGGTGTCTCACATCTTTTGTTACCTCTCCC
TCCCTCTCTTCTTCCCTCCTTCTCTCCTTCCCTCCTCCCTTCAATTTACA
AGGACAAGGAGATGGTCATCTTCCACTGTGGCAAGGTACGAATTAAAAGC
CCTTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCCCCATCC
TTCCTTCCATTCATTCGCCCCACCCTCCTTCCCTCCCTCTCTTCACAGAG
CCATCAACGCGGTCCACAATCTGCCGCACGTTTCCTCTCCCGCCTTCAGG
CTGCCACTGCTGCTGCTGTAGCTGCTGGTACGTGTGTTTTTCCCCTCTCC
GCCTTCTCTCTTTCTTTTTTCCCCCGGGAGAGAAGGGGGGGGGGGCTTGC
CGCAATATCTCCTTTTCCTCTCTTCTCTCTGCTTCCTTCCTTCCTTTTAT
GTCCTCTTACTTTGTCCCTGATGACTCATCGTTCCACTGTACGACCCTTC
CCTCCCTCCCTCCCTCCCTGCCAGGTAAGGACGTGGGACCCAAAGTCTAT
GTTTTGAAGGGAGGG
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Coding sequence (CDS) from alignment at scaffold_50:3086..4500-

>mRNA_10206 ID=mRNA_10206|Name=jgi.p|Nanoce1779_2|610418|organism=Nannochloropsis oceanica|type=CDS|length=918bp|location=Sequence derived from alignment at scaffold_50:3086..4500- (Nannochloropsis oceanica)
AGCCATCAACGCGGTCCACAATCTGCCGCACGTTTCCTCTCCCGCCTTCA
GGCTGCCACTGCTGCTGCTGTAGCTGCTGGTACGTGTGTTTTTCCCCTCT
CCGCCTTCTCTCTTTCTTTTTTCCCCCGGGAGAGAAGGGGGGGGGGGCTT
GCCGCAATATCTCCTTTTCCTCTCTTCTCTCTGCTTCCTTCCTTCCTTTT
ATGTCCTCTTACTTTGTCCCTGATGACTCATCGTTCCACTGTACGACCCT
TCCCTCCCTCCCTCCCTCCCTGCCAGGTAAGGACGTGGGACCCAAAGTCT
ATGTTTTGAATGATGACAGACAGAAATTTCGGTGTCGCTTTCCTCGGTGT
CTCACATCTTTTGTTACCTCTCCCTCCCTCTCTTCTTCCCTCCTTCTCTC
CTTCCCTCCTCCCTTCAATTTACAAGGACAAGGAGATGGTCATCTTCCAC
TGTGGCAAGAGCCATCAACGCGGTCCACAATCTGCCGCACGTTTCCTCTC
CCGCCTTCAGGCTGCCACTGCTGCTGCTGTAGCTGCTGGTACGTGTGTTT
TTCCCCTCTCCGCCTTCTCTCTTTCTTTTTTCCCCCGGGAGAGAAGGGGG
GGGGGGCTTGCCGCAATATCTCCTTTTCCTCTCTTCTCTCTGCTTCCTTC
CTTCCTTTTATGTCCTCTTACTTTGTCCCTGATGACTCATCGTTCCACTG
TACGACCCTTCCCTCCCTCCCTCCCTCCCTGCCAGGTAAGGACGTGGGAC
CCAAAGTCTATGTTTTGAATGATGACAGACAGAAATTTCGGTGTCGCTTT
CCTCGGTGTCTCACATCTTTTGTTACCTCTCCCTCCCTCTCTTCTTCCCT
CCTTCTCTCCTTCCCTCCTCCCTTCAATTTACAAGGACAAGGAGATGGTC
ATCTTCCACTGTGGCAAG
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Synonyms
Publications