jgi.p|Nanoce1779_2|345040, mRNA_10505 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|345040
Unique Name	mRNA_10505
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1093
Alignment location	scaffold_52:113913..115426 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	345126
Track	FilteredModels2
ProteinId	345040

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_52	supercontig	scaffold_52:113913..115426 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|345040	gene_10505	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|345040	mRNA_10505-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10505	CDS_10505	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_52:113913..115426+
coding sequence from alignment at scaffold_52:113913..115426+

mRNA sequence

>mRNA_10505 ID=mRNA_10505|Name=jgi.p|Nanoce1779_2|345040|organism=Nannochloropsis oceanica|type=mRNA|length=1093bp
ATTCTCACGTCACACATTACACAGCCATTTAATATCACACTAATTAATGT
GAACCAAAGTGAAACTGGATTGGACGCGTTCATGTCGTCTGCTCAGGCCC
GCTGGCAGAATATTATCACTGCCGAAGCAGCAGACATTGATTTAGGTCAA
ACTGACCTCACGAGCGGGAGGTTTGCACCGTATACTTACTCTGGACCTGT
TGACGATATTATTATCTTTTATGAACTCGCAACCTTACCTCCTGGCGTAT
TGGGGTCAGCTGGACCAACTCTAGTCCGAACAAATAATTCTCAACCCATT
GCGGGGACAATGAGATTTAGTATCGATTTTTTCAATAGTGGCGATATAAC
AGAAGATGTAATTTTGCATGAAATGGCGCATGCCATGGGGTTCGGCACGG
TGTGGGACTTAATAGGCTGCCTTTCGACGGTATGCGATGAAGACACCCCC
TCGCCTGTCACTTACACCTGCGCAAATGGTCTCGCTCAATATGCCTTGAC
AAATTGTACGACTATTCATCCCAACCTTACCATCGAGACAAGCACTGGTT
CTCCCGGTTCCGACTGTGGACATTGGGCAGAGGCCTCTTACAAGACGGAG
CTTATGTCACCGGCGGTTAATATAGCCAGTCTCGAATCGAACTCGCTCTC
TCGTTTTACAATCGGAGCAATGGCAGATATTTGGGGCTCGGTCAACTACG
CCGAGGCTGACCCGTTCTCATGCTCGGTAGGCATTGCATCAGCCTCACAA
GCTCAGTCGGATGATGCACCAATTTCGGAGATGCTATACCCTCTAAATAG
CGGCGAAGTCATTCTCTCACTGGCTCTGGCTGGCCGGACCATTTATGACT
ACCAACTTACGCGACTGTCAGAAGAGGACAAGCAAGCCGTAGTGGAAGCG
TTGGCGAGCCTGGGCAAGACCATCGTCACGACCGGACCCGACAGACGCCG
TTATTAAGTCTGTGTCGGTATGAGAGATAAATGGGACTTTATTTCTTCCG
TTTTTCAAAATTATTATATGTTTTGAGCGGTCCGGGGTGGCTTTTGGGGG
ATTCAATTGTCGAAAGGCAGTAGAGCAGGAGCGATCTCATATC

protein sequence of jgi.p|Nanoce1779_2|345040

>mRNA_10505-protein ID=mRNA_10505-protein|Name=jgi.p|Nanoce1779_2|345040|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MSSAQARWQNIITAEAADIDLGQTDLTSGRFAPYTYSGPVDDIIIFYELA
TLPPGVLGSAGPTLVRTNNSQPIAGTMRFSIDFFNSGDITEDVILHEMAH
AMGFGTVWDLIGCLSTVCDEDTPSPVTYTCANGLAQYALTNCTTIHPNLT
IETSTGSPGSDCGHWAEASYKTELMSPAVNIASLESNSLSRFTIGAMADI
WGSVNYAEADPFSCSVGIASASQAQSDDAPISEMLYPLNSGEVILSLALA
GRTIYDYQLTRLSEEDKQAVVEALASLGKTIVTTGPDRRRY*

mRNA from alignment at scaffold_52:113913..115426+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10505 ID=mRNA_10505|Name=jgi.p|Nanoce1779_2|345040|organism=Nannochloropsis oceanica|type=mRNA|length=1514bp|location=Sequence derived from alignment at scaffold_52:113913..115426+ (Nannochloropsis oceanica)
ATTCTCACGTCACACATTACACAGCCATTTAATATCACACTAATTAATGT
GAACCAAAGTGAAACTGGATTGGACGCGTTCATGTCGGTAAGTCCAAGCT
TTCATTGAATCTCATGTCAATAACCGCCACACAACCGATGCCAACCGACC
TACATGCCTTTTTCTATCAACTCCTCTCCCTGCATCTACCCACACAGTCT
GCTCAGGCCCGCTGGCAGAATATTATCACTGCCGAAGCAGCAGACATTGA
TTTAGGTCAAACTGACCTCACGAGCGGGAGGTTTGCACCGTATACTTACT
CTGGACCTGTTGACGATATTATTATCTTTTATGAACTCGCAACCTTACCT
CCTGGCGTATTGGGGTCAGCTGGACCAACTCTAGTCCGAACAAATAATTC
TCAACCCATTGCGGGGACAATGAGATTTAGTATCGATTTTTTCAATAGTG
GCGATATAACAGAAGATGTAATTTTGCATGAAATGGCGCATGCCATGGGG
TTCGGCACGGTAAGTGTAGTGAGAAATGGAAAGGCAAAGACTGGAGCTGA
AATAATGCTCATAAACGTTGTTGCTCGCGTGTTTTATGATGTCATGAACC
AAAATGGGGGATTTAACTTTCACTTCAATGGCTGCAGGTCAACGACGCAC
ACAAACAAAGGGAAACCCACAATCCTTCGTCTCAATTTCTTTATGTGTCC
AAAGTTATCATTATCATCATCATCGTTTGATACTCTTCATCCATTATGAC
AGGTGTGGGACTTAATAGGCTGCCTTTCGACGGTATGCGATGAAGACACC
CCCTCGCCTGTCACTTACACCTGCGCAAATGGTCTCGCTCAATATGCCTT
GACAAATTGTACGACTATTCATCCCAACCTTACCATCGAGACAAGCACTG
GTTCTCCCGGTTCCGACTGTGGACATTGGGCAGAGGCCTCTTACAAGACG
GAGCTTATGTCACCGGCGGTACGACTCGTGCTCCCTCGCTCCCTCACTGA
TATGTCCGACCTAATCGATACCAACGTATGCAACAGGTTAATATAGCCAG
TCTCGAATCGAACTCGCTCTCTCGTTTTACAATCGGAGCAATGGCAGATA
TTTGGGGCTCGGTCAACTACGCCGAGGCTGACCCGTTCTCATGCTCGGTA
GGCATTGCATCAGCCTCACAAGCTCAGTCGGATGATGCACCAATTTCGGA
GATGCTATACCCTCTAAATAGCGGCGAAGTCATTCTCTCACTGGCTCTGG
CTGGCCGGACCATTTATGACTACCAACTTACGCGACTGTCAGAAGAGGAC
AAGCAAGCCGTAGTGGAAGCGTTGGCGAGCCTGGGCAAGACCATCGTCAC
GACCGGACCCGACAGACGCCGTTATTAAGTCTGTGTCGGTATGAGAGATA
AATGGGACTTTATTTCTTCCGTTTTTCAAAATTATTATATGTTTTGAGCG
GTCCGGGGTGGCTTTTGGGGGATTCAATTGTCGAAAGGCAGTAGAGCAGG
AGCGATCTCATATC

Coding sequence (CDS) from alignment at scaffold_52:113913..115426+

>mRNA_10505 ID=mRNA_10505|Name=jgi.p|Nanoce1779_2|345040|organism=Nannochloropsis oceanica|type=CDS|length=3504bp|location=Sequence derived from alignment at scaffold_52:113913..115426+ (Nannochloropsis oceanica)
ATGTCGTCTGCTCAGGCCCGCTGGCAGAATATTATCACTGCCGAAGCAGC
AGACATTGATTTAGGTCAAACTGACCTCACGAGCGGGAGGTTTGCACCGT
ATACTTACTCTGGACCTGTTGACGATATTATTATCTTTTATGAACTCGCA
ACCTTACCTCCTGGCGTATTGGGGTCAGCTGGACCAACTCTAGTCCGAAC
AAATAATTCTCAACCCATTGCGGGGACAATGAGATTTAGTATCGATTTTT
TCAATAGTGGCGATATAACAGAAGATGTAATTTTGCATGAAATGGCGCAT
GCCATGGGGTTCGGCACGGTGTGGGACTTAATAGGCTGCCTTTCGACGGT
ATGCGATGAAGACACCCCCTCGCCTGTCACTTACACCTGCGCAAATGGTC
TCGCTCAATATGCCTTGACAAATTGTACGACTATTCATCCCAACCTTACC
ATCGAGACAAGCACTGGTTCTCCCGGTTCCGACTGTGGACATTGGGCAGA
GGCCTCTTACAAGACGGAGCTTATGTCACCGGCGGTTAATATAGCCAGTC
TCGAATCGAACTCGCTCTCTCGTTTTACAATCGGAGCAATGGCAGATATT
TGGGGCTCGGTCAACTACGCCGAGGCTGACCCGTTCTCATGCTCGGTAGG
CATTGCATCAGCCTCACAAGCTCAGTCGGATGATGCACCAATTTCGGAGA
TGCTATACCCTCTAAATAGCGGCGAAGTCATTCTCTCACTGGCTCTGGCT
GGCCGGACCATTTATGACTACCAACTTACGCGACTGTCAGAAGAGGACAA
GCAAGCCGTAGTGGAAGCGTTGGCGAGCCTGGGCAAGACCATCGTCACGA
CCGGACCCGACAGACGCCGTTATTAAATGTCGTCTGCTCAGGCCCGCTGG
CAGAATATTATCACTGCCGAAGCAGCAGACATTGATTTAGGTCAAACTGA
CCTCACGAGCGGGAGGTTTGCACCGTATACTTACTCTGGACCTGTTGACG
ATATTATTATCTTTTATGAACTCGCAACCTTACCTCCTGGCGTATTGGGG
TCAGCTGGACCAACTCTAGTCCGAACAAATAATTCTCAACCCATTGCGGG
GACAATGAGATTTAGTATCGATTTTTTCAATAGTGGCGATATAACAGAAG
ATGTAATTTTGCATGAAATGGCGCATGCCATGGGGTTCGGCACGGTGTGG
GACTTAATAGGCTGCCTTTCGACGGTATGCGATGAAGACACCCCCTCGCC
TGTCACTTACACCTGCGCAAATGGTCTCGCTCAATATGCCTTGACAAATT
GTACGACTATTCATCCCAACCTTACCATCGAGACAAGCACTGGTTCTCCC
GGTTCCGACTGTGGACATTGGGCAGAGGCCTCTTACAAGACGGAGCTTAT
GTCACCGGCGGTTAATATAGCCAGTCTCGAATCGAACTCGCTCTCTCGTT
TTACAATCGGAGCAATGGCAGATATTTGGGGCTCGGTCAACTACGCCGAG
GCTGACCCGTTCTCATGCTCGGTAGGCATTGCATCAGCCTCACAAGCTCA
GTCGGATGATGCACCAATTTCGGAGATGCTATACCCTCTAAATAGCGGCG
AAGTCATTCTCTCACTGGCTCTGGCTGGCCGGACCATTTATGACTACCAA
CTTACGCGACTGTCAGAAGAGGACAAGCAAGCCGTAGTGGAAGCGTTGGC
GAGCCTGGGCAAGACCATCGTCACGACCGGACCCGACAGACGCCGTTATT
AAATGTCGTCTGCTCAGGCCCGCTGGCAGAATATTATCACTGCCGAAGCA
GCAGACATTGATTTAGGTCAAACTGACCTCACGAGCGGGAGGTTTGCACC
GTATACTTACTCTGGACCTGTTGACGATATTATTATCTTTTATGAACTCG
CAACCTTACCTCCTGGCGTATTGGGGTCAGCTGGACCAACTCTAGTCCGA
ACAAATAATTCTCAACCCATTGCGGGGACAATGAGATTTAGTATCGATTT
TTTCAATAGTGGCGATATAACAGAAGATGTAATTTTGCATGAAATGGCGC
ATGCCATGGGGTTCGGCACGGTGTGGGACTTAATAGGCTGCCTTTCGACG
GTATGCGATGAAGACACCCCCTCGCCTGTCACTTACACCTGCGCAAATGG
TCTCGCTCAATATGCCTTGACAAATTGTACGACTATTCATCCCAACCTTA
CCATCGAGACAAGCACTGGTTCTCCCGGTTCCGACTGTGGACATTGGGCA
GAGGCCTCTTACAAGACGGAGCTTATGTCACCGGCGGTTAATATAGCCAG
TCTCGAATCGAACTCGCTCTCTCGTTTTACAATCGGAGCAATGGCAGATA
TTTGGGGCTCGGTCAACTACGCCGAGGCTGACCCGTTCTCATGCTCGGTA
GGCATTGCATCAGCCTCACAAGCTCAGTCGGATGATGCACCAATTTCGGA
GATGCTATACCCTCTAAATAGCGGCGAAGTCATTCTCTCACTGGCTCTGG
CTGGCCGGACCATTTATGACTACCAACTTACGCGACTGTCAGAAGAGGAC
AAGCAAGCCGTAGTGGAAGCGTTGGCGAGCCTGGGCAAGACCATCGTCAC
GACCGGACCCGACAGACGCCGTTATTAAATGTCGTCTGCTCAGGCCCGCT
GGCAGAATATTATCACTGCCGAAGCAGCAGACATTGATTTAGGTCAAACT
GACCTCACGAGCGGGAGGTTTGCACCGTATACTTACTCTGGACCTGTTGA
CGATATTATTATCTTTTATGAACTCGCAACCTTACCTCCTGGCGTATTGG
GGTCAGCTGGACCAACTCTAGTCCGAACAAATAATTCTCAACCCATTGCG
GGGACAATGAGATTTAGTATCGATTTTTTCAATAGTGGCGATATAACAGA
AGATGTAATTTTGCATGAAATGGCGCATGCCATGGGGTTCGGCACGGTGT
GGGACTTAATAGGCTGCCTTTCGACGGTATGCGATGAAGACACCCCCTCG
CCTGTCACTTACACCTGCGCAAATGGTCTCGCTCAATATGCCTTGACAAA
TTGTACGACTATTCATCCCAACCTTACCATCGAGACAAGCACTGGTTCTC
CCGGTTCCGACTGTGGACATTGGGCAGAGGCCTCTTACAAGACGGAGCTT
ATGTCACCGGCGGTTAATATAGCCAGTCTCGAATCGAACTCGCTCTCTCG
TTTTACAATCGGAGCAATGGCAGATATTTGGGGCTCGGTCAACTACGCCG
AGGCTGACCCGTTCTCATGCTCGGTAGGCATTGCATCAGCCTCACAAGCT
CAGTCGGATGATGCACCAATTTCGGAGATGCTATACCCTCTAAATAGCGG
CGAAGTCATTCTCTCACTGGCTCTGGCTGGCCGGACCATTTATGACTACC
AACTTACGCGACTGTCAGAAGAGGACAAGCAAGCCGTAGTGGAAGCGTTG
GCGAGCCTGGGCAAGACCATCGTCACGACCGGACCCGACAGACGCCGTTA
TTAA

Synonyms

Publications