jgi.p|Nanoce1779_2|614762, mRNA_11643 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|614762
Unique Name	mRNA_11643
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2076
Alignment location	scaffold_91:25321..27818 -

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Properties


Property Name	Value
TranscriptId	614848
Track	FilteredModels2
ProteinId	614762

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_91	supercontig	scaffold_91:25321..27818 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|614762	gene_11643	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|614762	mRNA_11643-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_11643	CDS_11643	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_91:25321..27818-
coding sequence from alignment at scaffold_91:25321..27818-

mRNA sequence

>mRNA_11643 ID=mRNA_11643|Name=jgi.p|Nanoce1779_2|614762|organism=Nannochloropsis oceanica|type=mRNA|length=2076bp
CAGTTCCCGACAGGCCGTCGAACGTAAGCGTGTGCCTTCCGCGTGCCACA
TCGCTCCCCCAAGCTACACCCACGCCCACAGAGACACTTAGAGGGCACGG
ACTTTACGCATTTTACACCACACTCCCACTGCCCACCGTCCTCCTCTCCC
TCGTGTCCCTTCGCTGCCCTCCAACTCGAAGACGGTGATGTCCTTCCCTT
CCTCCCCTGTGCGGAGTTATCCTCCAGGCAATGGCGGGTCTCAGCATCAT
CAAGAGCAATATCAGCAGCAGCAGCAGCAAATGAATGGTACTACTGCTGA
GGGAGGAGTGACAGCAGCAGGAGCCGGAGCAGGAACTGGACTCGGAGGCG
GACGAGAAGGAGGAAACGGATCATCCTTGCCTCCATCTCCATCTCGCGGA
CTCCCCGCCCTGTACTCTGTAAAACAAGCCCCCATGCCCTCACCGCAGCA
GGGGACCGACGTGGGCTATCCCCAGCATCTTAGCCAGAGTTGTAGCACAA
GCAGCAGCGGCAGCACAGGGACCCGGGGCAGCACCCACAGTCACGGCAGC
CGCGGTTCTGCTCATGGAGAGCAAGAAAGAGGTGGAGGGCAATACACATC
TCCCACGCAGCAGCAGCAGCAGCAACCACAGTACAGCGGTAGTGTCAACC
CCGACAAGCAAGACCGAGGAGCAGCAGCAACTCCAGGAGGAGCAGCCGCA
GCGTGGGCCGTGGCCGTTGAACGGGAGCGAGCCCGAGAGAACTTCATGAA
GCGAGACCAATTCGTGAAGAATCCACCCCCGGGTGTCAAATGGCGCCGGG
GAAAATGGACCCCTGAAGAAGAGGCTTACGTGAGCCGAGTCACGGAGGCC
TTCCACCAGGGCCTGCTGCCCCTCGCGGCCGGCACCACCCTCCGGTCCTA
CCTGTCAGACAAGCTCAACTGCGACCCCATGCGCATCACCAAGAAGTTCT
CTGGCGGTATGCATGTCGCCTGCCCTCCCTCCTTTCCTCCCTCCCTCGGC
ACGCGTCTCGAAACTTAAAGCTCACCCCTCTCTTTCCCTTCTCTCGATCC
CTCCCCTCCTCCCTCCACGCAGAGGGCTCCATCGGCAAGTGCATTTTCCA
TCCCTGCGTGCCCTCGCAGCCCCTCAAACTGGCGGAGACCATGATGGAGC
TTGACCGGCTGGAGGCCGTCTGGAAGCACCGGCTTGAAGAGATCCGAGCC
GTTGAATTCGAGTTCCAACAATCCGCCTCCATGTCTTCCCACGGCTCCGC
CTCCTTCCCGCCCTCTCTCCATCCCTCCCCCCTCGCCGGCCCTCCACCTC
CCTACTACTATATGCAGCACTACCCCCCCCCCTCCTTCCTCCCTTCCTCC
GCCCCCTCCTTCCGCTGGCCCGTTCCACCACCAGCAGAACCCAGCATACG
GCTGCGCTGCGGTTGCTGCTCCGCGCGCTCCTCCCCCTTCCTCCTACCCT
CCCTCCAGCTATCCCGACCCTCCCACTTCTCATCCTCCCCCTCTTCCTCA
CTCCCCTCACCGTCCGTCCCAAGCCGTCTTTAGCTACGGTCAGCAGCCCT
CCCTCCCTTCCTCCTTTCCTCCTCACCAGCAGTGGAATGCCCCCACGGGC
TCTCTTTCTCCACCATCAGCTCCTGTTTCTCCTTCCCGCGGGCCCCCTCC
TCCTTCCCCCTCCTCCACCCCTGCTCCCTTCCCCTCCGTCCCATTCACCT
TCTCAGATAACCACCATGAGGCACAGATGGTGCAGCCTCAGTCGCCGCGC
TCCGCCGAGGCCCGCGCCTGGCTCCATCGGTCCCGGGATCTGCTCTCTCT
CCCCCACGGCACGACCCGCATCGAGGCCTTGGATTCCTTGATTAAAGAGG
GGGAAAAGCTTAATCTGGCCGCCACCTCTCCCTCCCTTCCTTCCCCCGCC
CGTGGGGGTATGGAGAAGGAGGAGGGACAGCAGCAGGAGCAGCAACAAGA
GCAGCAGCAACAACAACCACTAGCACCACCACCACCACAACAACAACAAC
AACCACAACAACCACGCCCACCACCACAACAACCACAACAACCTCAAGAA
CAACAACAACAACAACCTCAAGAACA

protein sequence of jgi.p|Nanoce1779_2|614762

>mRNA_11643-protein ID=mRNA_11643-protein|Name=jgi.p|Nanoce1779_2|614762|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MSFPSSPVRSYPPGNGGSQHHQEQYQQQQQQMNGTTAEGGVTAAGAGAGT
GLGGGREGGNGSSLPPSPSRGLPALYSVKQAPMPSPQQGTDVGYPQHLSQ
SCSTSSSGSTGTRGSTHSHGSRGSAHGEQERGGGQYTSPTQQQQQQPQYS
GSVNPDKQDRGAAATPGGAAAAWAVAVERERARENFMKRDQFVKNPPPGV
KWRRGKWTPEEEAYVSRVTEAFHQGLLPLAAGTTLRSYLSDKLNCDPMRI
TKKFSGGMHVACPPSFPPSLGTRLET*

mRNA from alignment at scaffold_91:25321..27818-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11643 ID=mRNA_11643|Name=jgi.p|Nanoce1779_2|614762|organism=Nannochloropsis oceanica|type=mRNA|length=2498bp|location=Sequence derived from alignment at scaffold_91:25321..27818- (Nannochloropsis oceanica)
CAGTTCCCGACAGGCCGTCGAACGTAAGCGTGTGCCTTCCGCGTGCCACA
TCGCTCCCCCAAGCTACACCCACGCCCACAGAGACACTTAGAGGGCACGG
ACTTTACGCATTTTACACCACACTCCCACTGCCCACCGTCCTCCTCTCCC
TCGTGTCCCTTCGCTGCCCTCCAACTCGAAGACGGTGATGTCCTTCCCTT
CCTCCCCTGTGCGGAGTTATCCTCCAGGCAATGGCGGGTCTCAGCATCAT
CAAGAGCAATATCAGCAGCAGCAGCAGCAAATGAATGGTACTACTGCTGA
GGGAGGAGTGACAGCAGCAGGAGCCGGAGCAGGAACTGGACTCGGAGGCG
GACGAGAAGGAGGAAACGGATCATCCTTGCCTCCATCTCCATCTCGCGGA
CTCCCCGCCCTGTACTCTGTAAAACAAGCCCCCATGCCCTCACCGCAGCA
GGGGACCGACGTGGTACGTAGTGAGGGATAGAAGAGATGGAGATGTGGGA
AGTGGGATAGCCTAGCGTCTTCTTCGCCAATTTGATCTTATCCCCCACCG
ATGCCTCCGTCCTGCTCTCCCTCTCTCAGTCTCACACTCCGTCCTGCCCT
TCCTTTCATCCTCGCACGCTCATTTCGTCCTTCCTCTCGTTTCTTCCTTG
CGTCCACCACAGGGCTATCCCCAGCATCTTAGCCAGAGTTGTAGCACAAG
CAGCAGCGGCAGCACAGGGACCCGGGGCAGCACCCACAGTCACGGCAGCC
GCGGTTCTGCTCATGGAGAGCAAGAAAGAGGTGGAGGGCAATACACATCT
CCCACGCAGCAGCAGCAGCAGCAACCACAGTACAGCGGTAGTGTCAACCC
CGACAAGCAAGACCGAGGAGCAGCAGCAACTCCAGGAGGAGCAGCCGCAG
CGTGGGCCGTGGCCGTTGAACGGGAGCGAGCCCGAGAGAACTTCATGAAG
CGAGACCAATTCGTGAAGAATCCACCCCCGGGTGTCAAATGGCGCCGGGG
AAAATGGACCCCTGAAGAAGAGGCTTACGTGAGCCGAGTCACGGAGGCCT
TCCACCAGGGCCTGCTGCCCCTCGCGGCCGGCACCACCCTCCGGTCCTAC
CTGTCAGACAAGCTCAACTGCGACCCCATGCGCATCACCAAGAAGTTCTC
TGGCGGTATGCATGTCGCCTGCCCTCCCTCCTTTCCTCCCTCCCTCGGCA
CGCGTCTCGAAACTTAAAGCTCACCCCTCTCTTTCCCTTCTCTCGATCCC
TCCCCTCCTCCCTCCACGCAGAGGGCTCCATCGGCAAGTGCATTTTCCAT
CCCTGCGTGCCCTCGCAGCCCCTCAAACTGGCGGAGACCATGATGGAGCT
TGACCGGCTGGAGGTACGGAGGGAGGGAGGAAATAACAGGATGGGAGCAG
GGTAACGCACGGACCAAGGGAAGGAACTTATCGTCTTCCCTCCCCTCCCT
CCCTCCCTCATTTATTTTCCTTCTTCAGGCCGTCTGGAAGCACCGGCTTG
AAGAGATCCGAGCCGTTGAATTCGAGTTCCAACAATCCGCCTCCATGTCT
TCCCACGGCTCCGCCTCCTTCCCGCCCTCTCTCCATCCCTCCCCCCTCGC
CGGCCCTCCACCTCCCTACTACTATATGCAGCACTACCCCCCCCCCTCCT
TCCTCCCTTCCTCCGCCCCCTCCTTCCGCTGGCCCGTTCCACCACCAGCA
GAACCCAGCATACGGCTGCGCTGCGGTTGCTGCTCCGCGCGCTCCTCCCC
CTTCCTCCTACCCTCCCTCCAGCTATCCCGACCCTCCCACTTCTCATCCT
CCCCCTCTTCCTCACTCCCCTCACCGTCCGTCCCAAGCCGTCTTTAGCTA
CGGTCAGCAGCCCTCCCTCCCTTCCTCCTTTCCTCCTCACCAGCAGTGGA
ATGCCCCCACGGGCTCTCTTTCTCCACCATCAGCTCCTGTTTCTCCTTCC
CGCGGGCCCCCTCCTCCTTCCCCCTCCTCCACCCCTGCTCCCTTCCCCTC
CGTCCCATTCACCTTCTCAGATAACCACCATGAGGCACAGATGGTGCAGC
CTCAGTCGCCGCGCTCCGCCGAGGTACGTGGTCCCTCTCTCCCCTCCCTC
CCTCCCCTCCCTGCGTCTAGTACGACCAGTCACCCCCTCCTCTCCCTCCC
CTCTCTCTCAATCACTCCCTCCCTCCCTCAGGCCCGCGCCTGGCTCCATC
GGTCCCGGGATCTGCTCTCTCTCCCCCACGGCACGACCCGCATCGAGGCC
TTGGATTCCTTGATTAAAGAGGGGGAAAAGCTTAATCTGGCCGCCACCTC
TCCCTCCCTTCCTTCCCCCGCCCGTGGGGGTATGGAGAAGGAGGAGGGAC
AGCAGCAGGAGCAGCAACAAGAGCAGCAGCAACAACAACCACTAGCACCA
CCACCACCACAACAACAACAACAACCACAACAACCACGCCCACCACCACA
ACAACCACAACAACCTCAAGAACAACAACAACAACAACCTCAAGAACA

Coding sequence (CDS) from alignment at scaffold_91:25321..27818-

>mRNA_11643 ID=mRNA_11643|Name=jgi.p|Nanoce1779_2|614762|organism=Nannochloropsis oceanica|type=CDS|length=1662bp|location=Sequence derived from alignment at scaffold_91:25321..27818- (Nannochloropsis oceanica)
GGCTATCCCCAGCATCTTAGCCAGAGTTGTAGCACAAGCAGCAGCGGCAG
CACAGGGACCCGGGGCAGCACCCACAGTCACGGCAGCCGCGGTTCTGCTC
ATGGAGAGCAAGAAAGAGGTGGAGGGCAATACACATCTCCCACGCAGCAG
CAGCAGCAGCAACCACAGTACAGCGGTAGTGTCAACCCCGACAAGCAAGA
CCGAGGAGCAGCAGCAACTCCAGGAGGAGCAGCCGCAGCGTGGGCCGTGG
CCGTTGAACGGGAGCGAGCCCGAGAGAACTTCATGAAGCGAGACCAATTC
GTGAAGAATCCACCCCCGGGTGTCAAATGGCGCCGGGGAAAATGGACCCC
TGAAGAAGAGGCTTACGTGAGCCGAGTCACGGAGGCCTTCCACCAGGGCC
TGCTGCCCCTCGCGGCCGGCACCACCCTCCGGTCCTACCTGTCAGACAAG
CTCAACTGCGACCCCATGCGCATCACCAAGAAGTTCTCTGGCGGTATGCA
TGTCGCCTGCCCTCCCTCCTTTCCTCCCTCCCTCGGCACGCGTCTCGAAA
CTTAAATGTCCTTCCCTTCCTCCCCTGTGCGGAGTTATCCTCCAGGCAAT
GGCGGGTCTCAGCATCATCAAGAGCAATATCAGCAGCAGCAGCAGCAAAT
GAATGGTACTACTGCTGAGGGAGGAGTGACAGCAGCAGGAGCCGGAGCAG
GAACTGGACTCGGAGGCGGACGAGAAGGAGGAAACGGATCATCCTTGCCT
CCATCTCCATCTCGCGGACTCCCCGCCCTGTACTCTGTAAAACAAGCCCC
CATGCCCTCACCGCAGCAGGGGACCGACGTGGGCTATCCCCAGCATCTTA
GCCAGAGTTGTAGCACAAGCAGCAGCGGCAGCACAGGGACCCGGGGCAGC
ACCCACAGTCACGGCAGCCGCGGTTCTGCTCATGGAGAGCAAGAAAGAGG
TGGAGGGCAATACACATCTCCCACGCAGCAGCAGCAGCAGCAACCACAGT
ACAGCGGTAGTGTCAACCCCGACAAGCAAGACCGAGGAGCAGCAGCAACT
CCAGGAGGAGCAGCCGCAGCGTGGGCCGTGGCCGTTGAACGGGAGCGAGC
CCGAGAGAACTTCATGAAGCGAGACCAATTCGTGAAGAATCCACCCCCGG
GTGTCAAATGGCGCCGGGGAAAATGGACCCCTGAAGAAGAGGCTTACGTG
AGCCGAGTCACGGAGGCCTTCCACCAGGGCCTGCTGCCCCTCGCGGCCGG
CACCACCCTCCGGTCCTACCTGTCAGACAAGCTCAACTGCGACCCCATGC
GCATCACCAAGAAGTTCTCTGGCGGTATGCATGTCGCCTGCCCTCCCTCC
TTTCCTCCCTCCCTCGGCACGCGTCTCGAAACTTAAATGTCCTTCCCTTC
CTCCCCTGTGCGGAGTTATCCTCCAGGCAATGGCGGGTCTCAGCATCATC
AAGAGCAATATCAGCAGCAGCAGCAGCAAATGAATGGTACTACTGCTGAG
GGAGGAGTGACAGCAGCAGGAGCCGGAGCAGGAACTGGACTCGGAGGCGG
ACGAGAAGGAGGAAACGGATCATCCTTGCCTCCATCTCCATCTCGCGGAC
TCCCCGCCCTGTACTCTGTAAAACAAGCCCCCATGCCCTCACCGCAGCAG
GGGACCGACGTG

Synonyms

Publications