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Properties
| Property Name | Value |
|---|
| TranscriptId | 619246 |
| Track | FilteredModels2 |
| ProteinId | 619160 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_171 | supercontig | scaffold_171:21885..26242 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_11943 ID=mRNA_11943|Name=jgi.p|Nanoce1779_2|619160|organism=Nannochloropsis oceanica|type=mRNA|length=3431bp
AGCTTTTCACTCAACACACACAGGCCAGCCCGTGGCGAGCACCACGAGCA
TGCAGACCACGAAGGACGCGCTGGCGGGTAGCGGACGACCAGAAGAGCTG
CGGCGAGAATGCATGCACTCGAGGGGAAGGCGCCACTAACTCCGGGCAGA
CAATCCCAGAGTGACCGCCATTAATTTGAACAGCTGAAGCCTCTTGACAA
GCCACGAACCACTGCCTCGCCTCCCCTTGCCTCCCGCCTGCCCCTCGCAT
CTCCCTTTGCGGCCTCTCCGCCCACGACCTCGCATCCTCCCCCTCCCCTT
CCCCTCGCATCCCCCCTTGCCGCCTCCGCCCACGACCCCTCTCCTCGCAT
CCCCCTCCCTTTCCCCTCGCATCCTTTCCTGTCCACGACAACGACCAGCC
CGTCGCACTCTTGGCCCCTGTCTACAACCCGCTGCCTCGCCTCCCCTCCT
TGCATCCTTTCCTGCCCACGACCCGCCCCTGCCTCGCCTCCCCTCTGCTC
CTCTTCCCGACCCACGACCCGTCCCCTCGCATCCTCCCTCCCCTTCTCCT
CGCATCCTTCTCTGTCCATGACCACTACCCGCTCCTCGCATCCTCCCCTG
TCCACGATCACGACCCGCCCCTCGCATCCTCCTCCCCTGCCCCTCGCATC
ACTCCTTCTGTTTGGGTTAGGGTTTTTCTTCATTTTTGGGGCATCCCTCC
TGACGCACCAAGTCTTAGGACAAGTAGCAACATTCATGGAATGCCTTCAG
GACAAGATTTGCGTGCCGACCAATAGAACTGTTTTCTTTGTAAGACGGCC
GCATCGGCCTGGCTGAGGATCTGTAGAAAGGGCTTTTTGTCTATGACACT
TTTTGCACCGATGTCTCATTCTCTTTGGTCTCCATTTCTTTTTCCCTTTT
ACCAGCAAAATAGTCCGGGCACAAATAGCACGATGCAATGCGCGAGAGCG
TGTTGAACTGCTGAGCCAAGTCCACCTAGATATGGGTTCTTTGACCTTAT
CCCGCTGGATTTAAACTTATTCTCTTGCCAATGCGCATTTACTTGCAATA
CTACCGCACCACTCCTAGGCGCAGTCCAGTACTCGATAATCAATGTTGGT
GTCTGCCCCGGTGCCATGAGCGACCCTCACCTGGTTGGCGCCTATGGTGA
CCGCTACGACCTTGACGGCGAGCCTCGCGGCACCTACAGCCTCTTTTCCG
CGCCACAATTCCAAGTGGCCATGCACCTGGCCGGCGATGGACCCGGCAAG
CACTTCATGACACAGATCGGCCTGGTGGAAAGGTGTGATCAATTACTTCT
TTGTTGAAAGCTCCCGGGTGGACATGACTATCCAGCGCGCCCTTTTCGAT
TCCCAATGCCACCAAGACAAAGCAAGTAAATATAAGAGGGTTAAGAATGC
GATAATTTTACGGGCGTGCGTGCCGAACATCATATCTTTGTGGGTCATTG
GATTACTGGCGCTATTTCCGCTGTTTTCGCCGCTTCGTCCTGATAGCAAT
AGCATACAGTCATTTGGGAGATTACGAAACGGCGGGAGTATTATATGGAA
AGTCCTTTCACATCCGCCACCGATCGGATTTCAGGAAGGAAGTGGCTTGG
CAATGACGCACATAGGACAGGATGGTCAGCAAGAAGAGGAAATTTGGTTT
GCCGGCGGTTATCCCATCGATGAAGGCCGCATCCACATTTATGACCTGAA
GCGTGGCCTGTGGAATAGACGTTCAGCGCCCTCCTTGCCATGGGGCCTGC
ATCATGTTTTTAATGGGATGTTCTTCTGCGCAAAACGATCGGAGGTGATT
ATTTTAGGAGGCATCCGTTTCGACAACATGACACACTCACCTAATAACGC
CGCCCTGGTTCTTTCCCTCTTCCAAGGCAACAAGTCTGAGTGGGGACCAT
GGAGCGTCGTGGACCTACCAGTCGGAGGGATAATTCAGTGCACCAGCTTG
GACGTAGACGGCGTCCATTGGTGCTACACAGGCAGCAATGAGTTCGTGCA
AACCCCCTTTCGCTTCTTCCAGTTTGACCCTTGCACATTGTCGGTACTCA
AATGGCTCCCAATACCGCGTGTAAATTCCACACATGCGACGCTTTTACTT
GATGAAAAGCATCAACTCATTCACTTCCTCCCGGGGCGTCTCGCTGATTC
ACACGTCATCAACAAAGTGTTCTTCTTCGATTTGCGCATGAACATCTGGT
TGCCGGAAGAAGTCCACATCCCATATGTGCCCCTGGAAACACGTACGCCA
CTGCAAGTCCGAGGGAAGAACGTGGCGCTATTACTCGGAGGCCAAAAGAA
TGGGGCAGCTCAGTACGTTTCCGATGTGGTGCTTCAATACCACATGGACA
CAAAGACATTTCAATATGTCAGCGATATGCCTCTTAGCATGTTTGGGTTC
GCACTTGTATCGGTGGCCGCCAATAAGTACTTTGTGTATGGTGGAAGCTC
AGGGATAGGGCCAAAATTTCTACGTCTGGCATGGGAAGTCAATTTCCATG
ATTATCTTGAGGTGGAACTCAGGGAAGGGTTGAGAGGAGAGTCAGTATCT
GTGGTCAAGGCCTCATGCGGATCCATTGTGGTGACGACGGCCCTGCAAGA
GGCGATCAAGAGAATTCAGAGGGCTGGCAACGAAACATTGCTTTCCATTC
CCGCTAAGTGGTGCAGCACCAAAGATGCAGTTGGAGCTGGGGAACCGCAT
GTTCCGAGGGTATTGTCTATCGATTTTCTGCGTGATGGATTCCCTCACGA
AGTGGTTTGCGAAGAAGGAAATTTATGCTTGCTAACCTCATCCTTTATGT
GGGCAATACAGTAAGCTATGTTCTTTTTGAATGTAATCCACTCCTGTGAG
GCGGACAATCGAGTCCAAAAGGTCTCTTACGAGGTCCACAACACTCCTGC
CCATCGTACCTAGGATGTCCACGGGAAGGTGTGGAGGTAGTCCTTGGGAA
TGGCTGCTCGGACATTTGTTGTGGCGATTCACAAAAGCTGTCGTGGCGGT
GCATACAATAGATAGCTCCCATTTAATGACTTTTTGCATGGTGTCTTGAT
TGATGGGTTTGTCGGATCTCATAAAAATGATCAGCTTCCATGCAATCTCG
GACAAAATTATATTTAAGATCAATATATATTTAAGTCAAATAAAGGTGGA
TATTGACGATGGTTTTGGCGAATGATATAATGGTAGACTCTACATGGTGG
CAGAATGTCCACAGCAAAGTATACTTCATTGGCAGATGGGTTGTCCCAAA
AACCACAAGAACGTGAATAACTGCCAGGCTAGCTTGATGTATGATCCGAC
AGTCTTGGAAGGAATGCCCCTCCTTCTGGACAATGTACTTGGAAGGTGCA
AAGAGAATGAAGTGAATGAAATAAGATGTAAGTGAATGAAGTGAATGAAA
TAAAATGAAATGAAGATGAGGTTGATAGCCG back to topprotein sequence of jgi.p|Nanoce1779_2|619160 >mRNA_11943-protein ID=mRNA_11943-protein|Name=jgi.p|Nanoce1779_2|619160|organism=Nannochloropsis oceanica|type=polypeptide|length=497bp
MTIQRALFDSQCHQDKASKYKRVKNAIILRACVPNIISLWVIGLLALFPL
FSPLRPDSNSIQSFGRLRNGGSIIWKVLSHPPPIGFQEGSGLAMTHIGQD
GQQEEEIWFAGGYPIDEGRIHIYDLKRGLWNRRSAPSLPWGLHHVFNGMF
FCAKRSEVIILGGIRFDNMTHSPNNAALVLSLFQGNKSEWGPWSVVDLPV
GGIIQCTSLDVDGVHWCYTGSNEFVQTPFRFFQFDPCTLSVLKWLPIPRV
NSTHATLLLDEKHQLIHFLPGRLADSHVINKVFFFDLRMNIWLPEEVHIP
YVPLETRTPLQVRGKNVALLLGGQKNGAAQYVSDVVLQYHMDTKTFQYVS
DMPLSMFGFALVSVAANKYFVYGGSSGIGPKFLRLAWEVNFHDYLEVELR
EGLRGESVSVVKASCGSIVVTTALQEAIKRIQRAGNETLLSIPAKWCSTK
DAVGAGEPHVPRVLSIDFLRDGFPHEVVCEEGNLCLLTSSFMWAIQ* back to topmRNA from alignment at scaffold_171:21885..26242- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_11943 ID=mRNA_11943|Name=jgi.p|Nanoce1779_2|619160|organism=Nannochloropsis oceanica|type=mRNA|length=4358bp|location=Sequence derived from alignment at scaffold_171:21885..26242- (Nannochloropsis oceanica)
AGCTTTTCACTCAACACACACAGGCCAGCCCGTGGCGAGCACCACGAGCA
TGCAGACCACGAAGGACGCGCTGGCGGGTAGCGGACGACCAGAAGGTAAG
AAGAGGCAGATGGAGGGGAGGGAGGACAGGGGCAACGGTTTCATACCCTT
GAGTTGATCGCTCCAGGGGGGTGCACATGGCTGTTGTGGGGGAAGGCGGA
GGGGGAGGAGGAAGGGGAGAATGATGAGGAGGAGAAGGAAGCGGCGGGCG
CAGAACGAGGGGGAAAGGGGGGGGGGCATGCAGGAAGGGTCAGGGTGATG
GTGAGCAAGGGGGTGGGAGATCTACCATCCTCTCCCCGATCCTGCCCATC
CTAACACTCAATGAGTACTTGCTTCCTACTTTCACGTCACTCTCACCCTC
TTCGTGCGCGACACTCACCATTGCCTCCCTCCCTCATCCATTCCACACGC
AGAGCTGCGGCGAGAATGCATGCACTCGAGGGGAAGGCGCCACTAACTCC
GGGCAGACAATCCCAGAGGTAGGAGCAGTGGGTGGTGGGAAGGGAGAGCG
TCTATGTCTGCTTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTTGT
GCTGTCGTCTTCGCGACTTGCCTGCCCCTCTCTCCTCTCCTTCTCCTTGT
GGCCATAGAGTAAATCCCCGCCCTGCCTCCTCAACAAAACCCCCCTTGCC
CTCCCTCTCTCCCATTCCACGTCCTTCCACCGTTCACTTCCCTCACCCTC
CCTCTTTCCCTATATCCCTTCCTATCCCCTGCCCTCCCTCCCCCCTGATG
AAGTGACCGCCATTAATTTGAACAGCTGAAGCCTCTTGACAAGCCACGAA
CCACTGCCTCGCCTCCCCTTGCCTCCCGCCTGCCCCTCGCATCTCCCTTT
GCGGCCTCTCCGCCCACGACCTCGCATCCTCCCCCTCCCCTTCCCCTCGC
ATCCCCCCTTGCCGCCTCCGCCCACGACCCCTCTCCTCGCATCCCCCTCC
CTTTCCCCTCGCATCCTTTCCTGTCCACGACAACGACCAGCCCGTCGCAC
TCTTGGCCCCTGTCTACAACCCGCTGCCTCGCCTCCCCTCCTTGCATCCT
TTCCTGCCCACGACCCGCCCCTGCCTCGCCTCCCCTCTGCTCCTCTTCCC
GACCCACGACCCGTCCCCTCGCATCCTCCCTCCCCTTCTCCTCGCATCCT
TCTCTGTCCATGACCACTACCCGCTCCTCGCATCCTCCCCTGTCCACGAT
CACGACCCGCCCCTCGCATCCTCCTCCCCTGCCCCTCGCATCACTCCTTC
TGTTTGGGTTAGGGTTTTTCTTCATTTTTGGGGCATCCCTCCTGACGCAC
CAAGTCTTAGGACAAGTAGCAACATTCATGGAATGCCTTCAGGACAAGAT
TTGCGTGCCGACCAATAGAACTGTTTTCTTTGTAAGACGGCCGCATCGGC
CTGGCTGAGGATCTGTAGAAAGGGCTTTTTGTCTATGACACTTTTTGCAC
CGATGTCTCATTCTCTTTGGTCTCCATTTCTTTTTCCCTTTTACCAGCAA
AATAGTCCGGGCACAAATAGCACGATGCAATGCGCGAGAGCGTGTTGAAC
TGCTGAGCCAAGTCCACCTAGATATGGGTTCTTTGACCTTATCCCGCTGG
ATTTAAACTTATTCTCTTGCCAATGCGCATTTACTTGCAATACTACCGCA
CCACTCCTAGGCGCAGTCCAGTACTCGATAATCAATGTTGGTGTCTGCCC
CGGTGCCATGAGCGACCCTCACCTGGTTGGCGCCTATGGTGACCGCTACG
ACCTTGACGGCGAGCCTCGCGGCACCTACAGCCTCTTTTCCGCGCCACAA
TTCCAAGTGGCCATGCACCTGGCCGGCGATGGACCCGGCAAGCACTTCAT
GACACAGATCGGCCTGGTGGAAAGGTGTGATCAATTACGTAAGAAAATTG
CGAATAGGGTGTGACATTTTGGCATCATTTCCACAGGTTTCTCGCTAAGC
GCAGTACGGATTTTTTTTTCCTTGTGCCTACCCTAGGCATGACCGTGAAA
CCACACAGGGAGCGAGCGAGCAGCTAATGGCGTGGTCAATTTCATCTAAT
GTGCAAGGGCGGGACATGGGGGCCTATACTAGGCCCAAGACATTTTGACC
ATCACCATGACCATCATAATGACCATCATCATCATCACCATCATCATTAT
CATTATCAAAACATCCATGACAGTTCTTTGTTGAAAGCTCCCGGGTGGAC
ATGACTATCCAGCGCGCCCTTTTCGATTCCCAATGCCACCAAGACAAAGC
AAGTAAATATAAGAGGGTTAAGAATGCGATAATTTTACGGGCGTGCGTGC
CGAACATCATATCTTTGTGGGTCATTGGATTACTGGCGCTATTTCCGCTG
TTTTCGCCGCTTCGTCCTGATAGCAATAGCATACAGTCATTTGGGAGATT
ACGAAACGGCGGGAGTATTATATGGAAAGTCCTTTCACATCCGCCACCGA
TCGGATTTCAGGAAGGAAGTGGCTTGGCAATGACGCACATAGGACAGGAT
GGTCAGCAAGAAGAGGAAATTTGGTTTGCCGGCGGTTATCCCATCGATGA
AGGCCGCATCCACATTTATGACCTGAAGCGTGGCCTGTGGAATAGACGTT
CAGCGCCCTCCTTGCCATGGGGCCTGCATCATGTTTTTAATGGGATGTTC
TTCTGCGCAAAACGATCGGAGGTGATTATTTTAGGAGGCATCCGTTTCGA
CAACATGACACACTCACCTAATAACGCCGCCCTGGTTCTTTCCCTCTTCC
AAGGCAACAAGTCTGAGTGGGGACCATGGAGCGTCGTGGACCTACCAGTC
GGAGGGATAATTCAGTGCACCAGCTTGGACGTAGACGGCGTCCATTGGTG
CTACACAGGCAGCAATGAGTTCGTGCAAACCCCCTTTCGCTTCTTCCAGT
TTGACCCTTGCACATTGTCGGTACTCAAATGGCTCCCAATACCGCGTGTA
AATTCCACACATGCGACGCTTTTACTTGATGAAAAGCATCAACTCATTCA
CTTCCTCCCGGGGCGTCTCGCTGATTCACACGTCATCAACAAAGTGTTCT
TCTTCGATTTGCGCATGAACATCTGGTTGCCGGAAGAAGTCCACATCCCA
TATGTGCCCCTGGAAACACGTACGCCACTGCAAGTCCGAGGGAAGAACGT
GGCGCTATTACTCGGAGGCCAAAAGAATGGGGCAGCTCAGTACGTTTCCG
ATGTGGTGCTTCAATACCACATGGACACAAAGACATTTCAATATGTCAGC
GATATGCCTCTTAGCATGTTTGGGTTCGCACTTGTATCGGTGGCCGCCAA
TAAGTACTTTGTGTATGGTGGAAGCTCAGGGATAGGGCCAAAATTTCTAC
GTCTGGCATGGGAAGTCAATTTCCATGATTATCTTGAGGTGGAACTCAGG
GAAGGGTTGAGAGGAGAGTCAGTATCTGTGGTCAAGGCCTCATGCGGATC
CATTGTGGTGACGACGGCCCTGCAAGAGGCGATCAAGAGAATTCAGAGGG
CTGGCAACGAAACATTGCTTTCCATTCCCGCTAAGTGGTGCAGCACCAAA
GATGCAGTTGGAGCTGGGGAACCGCATGTTCCGAGGGTATTGTCTATCGA
TTTTCTGCGTGATGGATTCCCTCACGAAGTGGTTTGCGAAGAAGGAAATT
TATGCTTGCTAACCTCATCCTTTATGTGGGCAATACAGTAAGCTATGTTC
TTTTTGAATGTAATCCACTCCTGTGAGGCGGACAATCGAGTCCAAAAGGT
CTCTTACGAGGTCCACAACACTCCTGCCCATCGTACCTAGGATGTCCACG
GGAAGGTGTGGAGGTAGTCCTTGGGAATGGCTGCTCGGACATTTGTTGTG
GCGATTCACAAAAGCTGTCGTGGCGGTGCATACAATAGATAGCTCCCATT
TAATGACTTTTTGCATGGTGTCTTGATTGATGGGTTTGTCGGATCTCATA
AAAATGATCAGCTTCCATGCAATCTCGGACAAAATTATATTTAAGATCAA
TATATATTTAAGTCAAATAAAGGTGGATATTGACGATGGTTTTGGCGAAT
GATATAATGGTAGACTCTACATGGTGGCAGAATGTCCACAGCAAAGTATA
CTTCATTGGCAGATGGGTTGTCCCAAAAACCACAAGAACGTGAATAACTG
CCAGGCTAGCTTGATGTATGATCCGACAGTCTTGGAAGGAATGCCCCTCC
TTCTGGACAATGTACTTGGAAGGTGCAAAGAGAATGAAGTGAATGAAATA
AGATGTAAGTGAATGAAGTGAATGAAATAAAATGAAATGAAGATGAGGTT
GATAGCCG back to topCoding sequence (CDS) from alignment at scaffold_171:21885..26242- >mRNA_11943 ID=mRNA_11943|Name=jgi.p|Nanoce1779_2|619160|organism=Nannochloropsis oceanica|type=CDS|length=1491bp|location=Sequence derived from alignment at scaffold_171:21885..26242- (Nannochloropsis oceanica)
ATGACTATCCAGCGCGCCCTTTTCGATTCCCAATGCCACCAAGACAAAGC
AAGTAAATATAAGAGGGTTAAGAATGCGATAATTTTACGGGCGTGCGTGC
CGAACATCATATCTTTGTGGGTCATTGGATTACTGGCGCTATTTCCGCTG
TTTTCGCCGCTTCGTCCTGATAGCAATAGCATACAGTCATTTGGGAGATT
ACGAAACGGCGGGAGTATTATATGGAAAGTCCTTTCACATCCGCCACCGA
TCGGATTTCAGGAAGGAAGTGGCTTGGCAATGACGCACATAGGACAGGAT
GGTCAGCAAGAAGAGGAAATTTGGTTTGCCGGCGGTTATCCCATCGATGA
AGGCCGCATCCACATTTATGACCTGAAGCGTGGCCTGTGGAATAGACGTT
CAGCGCCCTCCTTGCCATGGGGCCTGCATCATGTTTTTAATGGGATGTTC
TTCTGCGCAAAACGATCGGAGGTGATTATTTTAGGAGGCATCCGTTTCGA
CAACATGACACACTCACCTAATAACGCCGCCCTGGTTCTTTCCCTCTTCC
AAGGCAACAAGTCTGAGTGGGGACCATGGAGCGTCGTGGACCTACCAGTC
GGAGGGATAATTCAGTGCACCAGCTTGGACGTAGACGGCGTCCATTGGTG
CTACACAGGCAGCAATGAGTTCGTGCAAACCCCCTTTCGCTTCTTCCAGT
TTGACCCTTGCACATTGTCGGTACTCAAATGGCTCCCAATACCGCGTGTA
AATTCCACACATGCGACGCTTTTACTTGATGAAAAGCATCAACTCATTCA
CTTCCTCCCGGGGCGTCTCGCTGATTCACACGTCATCAACAAAGTGTTCT
TCTTCGATTTGCGCATGAACATCTGGTTGCCGGAAGAAGTCCACATCCCA
TATGTGCCCCTGGAAACACGTACGCCACTGCAAGTCCGAGGGAAGAACGT
GGCGCTATTACTCGGAGGCCAAAAGAATGGGGCAGCTCAGTACGTTTCCG
ATGTGGTGCTTCAATACCACATGGACACAAAGACATTTCAATATGTCAGC
GATATGCCTCTTAGCATGTTTGGGTTCGCACTTGTATCGGTGGCCGCCAA
TAAGTACTTTGTGTATGGTGGAAGCTCAGGGATAGGGCCAAAATTTCTAC
GTCTGGCATGGGAAGTCAATTTCCATGATTATCTTGAGGTGGAACTCAGG
GAAGGGTTGAGAGGAGAGTCAGTATCTGTGGTCAAGGCCTCATGCGGATC
CATTGTGGTGACGACGGCCCTGCAAGAGGCGATCAAGAGAATTCAGAGGG
CTGGCAACGAAACATTGCTTTCCATTCCCGCTAAGTGGTGCAGCACCAAA
GATGCAGTTGGAGCTGGGGAACCGCATGTTCCGAGGGTATTGTCTATCGA
TTTTCTGCGTGATGGATTCCCTCACGAAGTGGTTTGCGAAGAAGGAAATT
TATGCTTGCTAACCTCATCCTTTATGTGGGCAATACAGTAA back to top
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