jgi.p|Nanoce1779_2|132847, mRNA_7376 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|132847
Unique NamemRNA_7376
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1111
Alignment locationscaffold_19:363547..364657 +

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Properties
Property NameValue
TranscriptId132933
TrackFilteredModels2
ProteinId132847
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:363547..364657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|132847gene_7376Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|132847mRNA_7376-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7376CDS_7376Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7376 ID=mRNA_7376|Name=jgi.p|Nanoce1779_2|132847|organism=Nannochloropsis oceanica|type=mRNA|length=1111bp
AAACAGAGCGATACATCGGTTCAACTTCCGAGTCATGGGCTGGGCTTTAA
ACTTGGATCATGCCTATCTTGGCCATAAGATCACGCCACCCACTCCACAC
GCTACAGGCCATGCCGCCACGCAGTTTCTTTATAGGGTCGTCTTCTTGGG
GTTGGTACCGGGAAGGGATGAGACATGGGCGATCACTACCCAGGTAAGTT
TGGGATAGGTGGAAGGCTTTCTGTTGAAGAAGAGCGGCATTCGCATGGTC
CTTGGCCTCATCAAGCTGCCAGGGCCGTACACGTCCAAATTGCTCAGGCC
ATCACGGCCTATATACGACACCTCCCTCGACAGAGCCTCGTCCTTGTCGC
CCTTCTTCGCATCGCCTTGTGCGTCTTTGTGCTCCTGCAGCACCAATTCC
TCCTCCTCGTCCTCCTCCTTCAGCACCACTTCCTCCTCCTATTCTTCTGG
TCTACACCGTCTCCTCCTCGGCTTAGTCGGAGAGATGAATGCCGGCAAGT
CCACAGTTCTCAATGCCTTGACGCAACAAGCTACAAGTATCGTTGATGCC
ACGCCTGGGACAACATCAGATATCAAGACAGCCATCATGGAAATACATGG
TTTGGGGCCGATCAAACTACTAGATACAGCAGGTGTGGATGACACGGGAC
GACTGGGAGATAAGAAGAGGAATAAGACATGGGAGGCAATGCGGGAAGTG
GACGCGGCACTCGTGGTGATAGAGCCCTTTAACAAAGCAAAGGTGGCGAC
TCAAGGGATGGATGAAGAGGAAGGACGTGCAGGAAGAAGAAGGGTGGCAG
AAAACGGCTGTGGAGGAGGAGAAGCCCGTATCACCGCCATCAGCAACAGC
AGTAGCAGGAGCAGTAGCAGTCGGATCAGCACGATCACTATATGTGGCAG
GGACAGCAGGAAAAGCAGCTGCAGGGAGAACGCCAGTGGTGCCGGTTGCT
TGTACAGCCTCCTCTGCCTCCCTCCCTCTTCTCATTTCCCTTGTTCGAAG
CATGGCCAAGCGACGCCGTCCCTCCATGCTCATCTTCAATATTAAGAATG
ACGAACGAGAGAAATTTATGCGGCGAATTGGCGATGGGAGGGAAGGGGGG
GGGGAGTGGAG
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protein sequence of jgi.p|Nanoce1779_2|132847

>mRNA_7376-protein ID=mRNA_7376-protein|Name=jgi.p|Nanoce1779_2|132847|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MVLGLIKLPGPYTSKLLRPSRPIYDTSLDRASSLSPFFASPCASLCSCST
NSSSSSSSFSTTSSSYSSGLHRLLLGLVGEMNAGKSTVLNALTQQATSIV
DATPGTTSDIKTAIMEIHGLGPIKLLDTAGVDDTGRLGDKKRNKTWEAMR
EVDAALVVIEPFNKAKVATQGMDEEEGRAGRRRVAENGCGGGEARITAIS
NSSSRSSSSRISTITICGRDSRKSSCRENASGAGCLYSLLCLPPSSHFPC
SKHGQATPSLHAHLQY*
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mRNA from alignment at scaffold_19:363547..364657+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7376 ID=mRNA_7376|Name=jgi.p|Nanoce1779_2|132847|organism=Nannochloropsis oceanica|type=mRNA|length=1111bp|location=Sequence derived from alignment at scaffold_19:363547..364657+ (Nannochloropsis oceanica)
AAACAGAGCGATACATCGGTTCAACTTCCGAGTCATGGGCTGGGCTTTAA
ACTTGGATCATGCCTATCTTGGCCATAAGATCACGCCACCCACTCCACAC
GCTACAGGCCATGCCGCCACGCAGTTTCTTTATAGGGTCGTCTTCTTGGG
GTTGGTACCGGGAAGGGATGAGACATGGGCGATCACTACCCAGGTAAGTT
TGGGATAGGTGGAAGGCTTTCTGTTGAAGAAGAGCGGCATTCGCATGGTC
CTTGGCCTCATCAAGCTGCCAGGGCCGTACACGTCCAAATTGCTCAGGCC
ATCACGGCCTATATACGACACCTCCCTCGACAGAGCCTCGTCCTTGTCGC
CCTTCTTCGCATCGCCTTGTGCGTCTTTGTGCTCCTGCAGCACCAATTCC
TCCTCCTCGTCCTCCTCCTTCAGCACCACTTCCTCCTCCTATTCTTCTGG
TCTACACCGTCTCCTCCTCGGCTTAGTCGGAGAGATGAATGCCGGCAAGT
CCACAGTTCTCAATGCCTTGACGCAACAAGCTACAAGTATCGTTGATGCC
ACGCCTGGGACAACATCAGATATCAAGACAGCCATCATGGAAATACATGG
TTTGGGGCCGATCAAACTACTAGATACAGCAGGTGTGGATGACACGGGAC
GACTGGGAGATAAGAAGAGGAATAAGACATGGGAGGCAATGCGGGAAGTG
GACGCGGCACTCGTGGTGATAGAGCCCTTTAACAAAGCAAAGGTGGCGAC
TCAAGGGATGGATGAAGAGGAAGGACGTGCAGGAAGAAGAAGGGTGGCAG
AAAACGGCTGTGGAGGAGGAGAAGCCCGTATCACCGCCATCAGCAACAGC
AGTAGCAGGAGCAGTAGCAGTCGGATCAGCACGATCACTATATGTGGCAG
GGACAGCAGGAAAAGCAGCTGCAGGGAGAACGCCAGTGGTGCCGGTTGCT
TGTACAGCCTCCTCTGCCTCCCTCCCTCTTCTCATTTCCCTTGTTCGAAG
CATGGCCAAGCGACGCCGTCCCTCCATGCTCATCTTCAATATTAAGAATG
ACGAACGAGAGAAATTTATGCGGCGAATTGGCGATGGGAGGGAAGGGGGG
GGGGAGTGGAG
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Coding sequence (CDS) from alignment at scaffold_19:363547..364657+

>mRNA_7376 ID=mRNA_7376|Name=jgi.p|Nanoce1779_2|132847|organism=Nannochloropsis oceanica|type=CDS|length=801bp|location=Sequence derived from alignment at scaffold_19:363547..364657+ (Nannochloropsis oceanica)
ATGGTCCTTGGCCTCATCAAGCTGCCAGGGCCGTACACGTCCAAATTGCT
CAGGCCATCACGGCCTATATACGACACCTCCCTCGACAGAGCCTCGTCCT
TGTCGCCCTTCTTCGCATCGCCTTGTGCGTCTTTGTGCTCCTGCAGCACC
AATTCCTCCTCCTCGTCCTCCTCCTTCAGCACCACTTCCTCCTCCTATTC
TTCTGGTCTACACCGTCTCCTCCTCGGCTTAGTCGGAGAGATGAATGCCG
GCAAGTCCACAGTTCTCAATGCCTTGACGCAACAAGCTACAAGTATCGTT
GATGCCACGCCTGGGACAACATCAGATATCAAGACAGCCATCATGGAAAT
ACATGGTTTGGGGCCGATCAAACTACTAGATACAGCAGGTGTGGATGACA
CGGGACGACTGGGAGATAAGAAGAGGAATAAGACATGGGAGGCAATGCGG
GAAGTGGACGCGGCACTCGTGGTGATAGAGCCCTTTAACAAAGCAAAGGT
GGCGACTCAAGGGATGGATGAAGAGGAAGGACGTGCAGGAAGAAGAAGGG
TGGCAGAAAACGGCTGTGGAGGAGGAGAAGCCCGTATCACCGCCATCAGC
AACAGCAGTAGCAGGAGCAGTAGCAGTCGGATCAGCACGATCACTATATG
TGGCAGGGACAGCAGGAAAAGCAGCTGCAGGGAGAACGCCAGTGGTGCCG
GTTGCTTGTACAGCCTCCTCTGCCTCCCTCCCTCTTCTCATTTCCCTTGT
TCGAAGCATGGCCAAGCGACGCCGTCCCTCCATGCTCATCTTCAATATTA
A
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Synonyms
Publications