jgi.p|Nanoce1779_2|606841, mRNA_9197 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|606841
Unique Name	mRNA_9197
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1130
Alignment location	scaffold_36:194919..196704 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	606927
Track	FilteredModels2
ProteinId	606841

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_36	supercontig	scaffold_36:194919..196704 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606841	gene_9197	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606841	mRNA_9197-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9197	CDS_9197	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_36:194919..196704+
coding sequence from alignment at scaffold_36:194919..196704+

mRNA sequence

>mRNA_9197 ID=mRNA_9197|Name=jgi.p|Nanoce1779_2|606841|organism=Nannochloropsis oceanica|type=mRNA|length=1130bp
CAGACAGGAGAGCGGAAGCTTTTTTGGTGTGTTTAACCAGAGGACCTAGA
ACACAATGGCTCCCAAGAAGGTGACGAAAAAGCCTGCCAAGAAGGCGGCA
CCCAAGGCCAACCCGCTCTTCGTGGCGGAGCCCCGCAGCTTCCGCGTCGG
TGGCGCTATCCGGCCTAAGGGCCGCGACCTCTCGCGCTTCGTCAAGTGGC
CCCGCTACGTCCGCATCCAGCGGCAGCGCAAAATCTTGTACCAACGTCTG
AAGGTGCCCCCTGCCATCAACCAGTTCTCCAATGCTCTGGAGAAGAACCA
GGCCACGGAGCTGTTCAAACTGCTGGCCAAGTACCGCCCCGAGAGCAAGG
TAGAGAAGCGCGAACGGCTCAAGCAGCTGGCGGCGGCCAAGGCAAGTGGA
GGAGAGGCAGCGGCGCCGAGCAAGCAGACCGTGGTGAAGTTTGGCTTGAA
GCACGTAACGGAGCTGATTGAGGCCAAGAAGGTGAAGTTCGTGGCCATTG
CCCACGACGTGAACCCGATCGAGTTAGTGGTGTGGCTCCCCGCGCTGTGC
CGCAAGCAGGGGATCCCCTATGCCATTGTCAAGGGGAAGGCGCGTTTGGG
CGCGCTGGTACACAAGAAGAATGCGGCGGTCGTGGCGCTAGAGGAGGCGA
GGAAGGAGGACAAAGCAAGCTTTGAGAAGATGTGCGGGGATTTCAAGAAC
CAGTTCAATGACAAGAAGGAGCGAACATGGGGTGGGGGAATCATGGGCCT
CAAGACCCAGAAGCGGTTGGAGATCCGCCAACGTGCGGTGGAGGCCGAGC
TGGCCAAGAAGGCTGCTTTCTAATTTGCTCGTACACCTAGATCCATGAAT
TGACTCAGTCCGTCACGTTCCAGAAAGGTTTTTGCTTGCCTGCTTGGGGG
TTGGGTGGGTGCATGGCGGAGGGTGCTCTCGACCCTCGGCTTAGGATTTG
AATGGGAGTGAAGACAAAACAGAGAGATAGAGAAAGAGAGAGAAGGGTGG
GCTTACTTGCATAGCATGGGAGGGGGATAAACAAGCCGCCTGTGTATGTA
GGTGAGCAGCGTACTTCAGGGCAGGGAAGGTGATCCAGATCACAAAGAAA
AAAGAACGAAAACAACAACAAAAAATCAAA

protein sequence of jgi.p|Nanoce1779_2|606841

>mRNA_9197-protein ID=mRNA_9197-protein|Name=jgi.p|Nanoce1779_2|606841|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MAPKKVTKKPAKKAAPKANPLFVAEPRSFRVGGAIRPKGRDLSRFVKWPR
YVRIQRQRKILYQRLKVPPAINQFSNALEKNQATELFKLLAKYRPESKVE
KRERLKQLAAAKASGGEAAAPSKQTVVKFGLKHVTELIEAKKVKFVAIAH
DVNPIELVVWLPALCRKQGIPYAIVKGKARLGALVHKKNAAVVALEEARK
EDKASFEKMCGDFKNQFNDKKERTWGGGIMGLKTQKRLEIRQRAVEAELA
KKAAF*

mRNA from alignment at scaffold_36:194919..196704+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9197 ID=mRNA_9197|Name=jgi.p|Nanoce1779_2|606841|organism=Nannochloropsis oceanica|type=mRNA|length=1786bp|location=Sequence derived from alignment at scaffold_36:194919..196704+ (Nannochloropsis oceanica)
CAGACAGGAGAGCGGAAGCTTTTTTGGTGTGTTTAACCAGAGGACCTAGA
ACACAATGGTACGTTGGTAGCTGTGAGAGGTTGGGTGGGTTTGCGGGCGA
CGCGGAAGAGTTGGGAAGAAGAAAGCTGGTGCGACGCAGTGGGGCTGTAG
TCATGTAATGCGCAGCGTAAATGTGCCTAATCTCTGCGCGCATTGTCAGC
ATTACTGTCCTCATAGGGGCCACTGTCGTTAAGGCTGGGTGACTGCTGGG
AGGGTTCGGCATCATCAAAGAATGGAAGGGGGGAGGGAGGACAGGACAGG
ACATATCAACCAACAACATTTGTGCGCTTGCTTTCGTGATAATTCTCACT
CACTTCATTATATATTTTTGTCCGCACAGGCTCCCAAGAAGGTGACGAAA
AAGCCTGCCAAGAAGGCGGCACCCAAGGCCAACCCGCTCTTCGTGGCGGA
GCCCCGCAGCTTCCGCGTCGGTGGCGCTATCCGGGTGCGTAATCTTGTGA
CAGGGAGAATACCAGAGGGAGTGGACAAAGGGCTTAGGATCGTCACGTCT
ATTTTATTGAAGATAGTTGTTGCTCCAGTCTCGGTGTGTTAGTAGTTGTG
TGTGTGCGTACTTCCATGCCGAGTTCCTGCGCATTCCTTGCTCTGATCTG
ATCTGTCAGGTGTTGTGATGTGGTGTTCGTGCCCGTTTTTCTCCTTTTCC
CCCGAAGCTTTTATCTGCCTAGTGACAAACACATCTGCCACACATCTGCC
GGTCCCAATAACTGCCACTCACGCTCTTATTCCCTCCCTTTCTTCCTCAC
TCCTCCCTCCTATCCACAGCCTAAGGGCCGCGACCTCTCGCGCTTCGTCA
AGTGGCCCCGCTACGTCCGCATCCAGCGGCAGCGCAAAATCTTGTACCAA
CGTCTGAAGGTGCCCCCTGCCATCAACCAGTTCTCCAATGCTCTGGAGAA
GAACCAGGCCACGGAGCTGTTCAAACTGCTGGCCAAGTACCGCCCCGAGA
GCAAGGTAGAGAAGCGCGAACGGCTCAAGCAGCTGGCGGCGGCCAAGGCA
AGTGGAGGAGAGGCAGCGGCGCCGAGCAAGCAGACCGTGGTGAAGTTTGG
CTTGAAGCACGTAACGGAGCTGATTGAGGCCAAGAAGGTGAAGTTCGTGG
CCATTGCCCACGACGTGAACCCGATCGAGTTAGTGGTGTGGCTCCCCGCG
CTGTGCCGCAAGCAGGGGATCCCCTATGCCATTGTCAAGGGGAAGGCGCG
TTTGGGCGCGCTGGTACACAAGAAGAATGCGGCGGTCGTGGCGCTAGAGG
AGGCGAGGAAGGAGGACAAAGCAAGCTTTGAGAAGATGTGCGGGGATTTC
AAGAACCAGTTCAATGACAAGAAGGAGCGAACATGGGGTGGGGGAATCAT
GGGCCTCAAGACCCAGAAGCGGTTGGAGATCCGCCAACGTGCGGTGGAGG
CCGAGCTGGCCAAGAAGGCTGCTTTCTAATTTGCTCGTACACCTAGATCC
ATGAATTGACTCAGTCCGTCACGTTCCAGAAAGGTTTTTGCTTGCCTGCT
TGGGGGTTGGGTGGGTGCATGGCGGAGGGTGCTCTCGACCCTCGGCTTAG
GATTTGAATGGGAGTGAAGACAAAACAGAGAGATAGAGAAAGAGAGAGAA
GGGTGGGCTTACTTGCATAGCATGGGAGGGGGATAAACAAGCCGCCTGTG
TATGTAGGTGAGCAGCGTACTTCAGGGCAGGGAAGGTGATCCAGATCACA
AAGAAAAAAGAACGAAAACAACAACAAAAAATCAAA

Coding sequence (CDS) from alignment at scaffold_36:194919..196704+

>mRNA_9197 ID=mRNA_9197|Name=jgi.p|Nanoce1779_2|606841|organism=Nannochloropsis oceanica|type=CDS|length=2304bp|location=Sequence derived from alignment at scaffold_36:194919..196704+ (Nannochloropsis oceanica)
ATGGCTCCCAAGAAGGTGACGAAAAAGCCTGCCAAGAAGGCGGCACCCAA
GGCCAACCCGCTCTTCGTGGCGGAGCCCCGCAGCTTCCGCGTCGGTGGCG
CTATCCGGCCTAAGGGCCGCGACCTCTCGCGCTTCGTCAAGTGGCCCCGC
TACGTCCGCATCCAGCGGCAGCGCAAAATCTTGTACCAACGTCTGAAGGT
GCCCCCTGCCATCAACCAGTTCTCCAATGCTCTGGAGAAGAACCAGGCCA
CGGAGCTGTTCAAACTGCTGGCCAAGTACCGCCCCGAGAGCAAGGTAGAG
AAGCGCGAACGGCTCAAGCAGCTGGCGGCGGCCAAGGCAAGTGGAGGAGA
GGCAGCGGCGCCGAGCAAGCAGACCGTGGTGAAGTTTGGCTTGAAGCACG
TAACGGAGCTGATTGAGGCCAAGAAGGTGAAGTTCGTGGCCATTGCCCAC
GACGTGAACCCGATCGAGTTAGTGGTGTGGCTCCCCGCGCTGTGCCGCAA
GCAGGGGATCCCCTATGCCATTGTCAAGGGGAAGGCGCGTTTGGGCGCGC
TGGTACACAAGAAGAATGCGGCGGTCGTGGCGCTAGAGGAGGCGAGGAAG
GAGGACAAAGCAAGCTTTGAGAAGATGTGCGGGGATTTCAAGAACCAGTT
CAATGACAAGAAGGAGCGAACATGGGGTGGGGGAATCATGGGCCTCAAGA
CCCAGAAGCGGTTGGAGATCCGCCAACGTGCGGTGGAGGCCGAGCTGGCC
AAGAAGGCTGCTTTCTAAATGGCTCCCAAGAAGGTGACGAAAAAGCCTGC
CAAGAAGGCGGCACCCAAGGCCAACCCGCTCTTCGTGGCGGAGCCCCGCA
GCTTCCGCGTCGGTGGCGCTATCCGGCCTAAGGGCCGCGACCTCTCGCGC
TTCGTCAAGTGGCCCCGCTACGTCCGCATCCAGCGGCAGCGCAAAATCTT
GTACCAACGTCTGAAGGTGCCCCCTGCCATCAACCAGTTCTCCAATGCTC
TGGAGAAGAACCAGGCCACGGAGCTGTTCAAACTGCTGGCCAAGTACCGC
CCCGAGAGCAAGGTAGAGAAGCGCGAACGGCTCAAGCAGCTGGCGGCGGC
CAAGGCAAGTGGAGGAGAGGCAGCGGCGCCGAGCAAGCAGACCGTGGTGA
AGTTTGGCTTGAAGCACGTAACGGAGCTGATTGAGGCCAAGAAGGTGAAG
TTCGTGGCCATTGCCCACGACGTGAACCCGATCGAGTTAGTGGTGTGGCT
CCCCGCGCTGTGCCGCAAGCAGGGGATCCCCTATGCCATTGTCAAGGGGA
AGGCGCGTTTGGGCGCGCTGGTACACAAGAAGAATGCGGCGGTCGTGGCG
CTAGAGGAGGCGAGGAAGGAGGACAAAGCAAGCTTTGAGAAGATGTGCGG
GGATTTCAAGAACCAGTTCAATGACAAGAAGGAGCGAACATGGGGTGGGG
GAATCATGGGCCTCAAGACCCAGAAGCGGTTGGAGATCCGCCAACGTGCG
GTGGAGGCCGAGCTGGCCAAGAAGGCTGCTTTCTAAATGGCTCCCAAGAA
GGTGACGAAAAAGCCTGCCAAGAAGGCGGCACCCAAGGCCAACCCGCTCT
TCGTGGCGGAGCCCCGCAGCTTCCGCGTCGGTGGCGCTATCCGGCCTAAG
GGCCGCGACCTCTCGCGCTTCGTCAAGTGGCCCCGCTACGTCCGCATCCA
GCGGCAGCGCAAAATCTTGTACCAACGTCTGAAGGTGCCCCCTGCCATCA
ACCAGTTCTCCAATGCTCTGGAGAAGAACCAGGCCACGGAGCTGTTCAAA
CTGCTGGCCAAGTACCGCCCCGAGAGCAAGGTAGAGAAGCGCGAACGGCT
CAAGCAGCTGGCGGCGGCCAAGGCAAGTGGAGGAGAGGCAGCGGCGCCGA
GCAAGCAGACCGTGGTGAAGTTTGGCTTGAAGCACGTAACGGAGCTGATT
GAGGCCAAGAAGGTGAAGTTCGTGGCCATTGCCCACGACGTGAACCCGAT
CGAGTTAGTGGTGTGGCTCCCCGCGCTGTGCCGCAAGCAGGGGATCCCCT
ATGCCATTGTCAAGGGGAAGGCGCGTTTGGGCGCGCTGGTACACAAGAAG
AATGCGGCGGTCGTGGCGCTAGAGGAGGCGAGGAAGGAGGACAAAGCAAG
CTTTGAGAAGATGTGCGGGGATTTCAAGAACCAGTTCAATGACAAGAAGG
AGCGAACATGGGGTGGGGGAATCATGGGCCTCAAGACCCAGAAGCGGTTG
GAGATCCGCCAACGTGCGGTGGAGGCCGAGCTGGCCAAGAAGGCTGCTTT
CTAA

Synonyms

Publications