jgi.p|Nanoce1779_2|674200, mRNA_9678 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|674200
Unique Name	mRNA_9678
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	914
Alignment location	scaffold_38:82655..84465 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	674286
Track	FilteredModels2
ProteinId	674200

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_38	supercontig	scaffold_38:82655..84465 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|674200	gene_9678	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|674200	mRNA_9678-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9678	CDS_9678	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_38:82655..84465+
coding sequence from alignment at scaffold_38:82655..84465+

mRNA sequence

>mRNA_9678 ID=mRNA_9678|Name=jgi.p|Nanoce1779_2|674200|organism=Nannochloropsis oceanica|type=mRNA|length=914bp
ATGTCTCTGCTCCTCGCCCTACGAAAACACAGCAGCGACAACAACAATTA
CAACAGTGTCATGGCCCCTTCTTCCATCGCCTCTTCTTCTTCATCTCTTT
CTATTAGCCATCTCTTTGACGTGACGGGCAAGACAGTCCTCATTACAGGC
GGCGGCACGGGCATCGGCCGCATGCTGGCTCAAGGCTTCGTTGACAATGG
TGCCCGAGTCTTTATCGCCTCTCGAAGAGAAGCCAAGCAAGCCGCGGCGG
AAATCGTTGGCGCCTCCTCCCTCCCTCCCTCCCTTGCCTTCTGTCGAGGC
CTCACAGCAGATCTGGCCAAGGGGGAAGGCGAGCAGACCGCCCTCTTAGC
AGCAGTGGCCAAGGAGACGGGTGGCAAGTTACACGTTCTTATCAACAATG
CGGGTACCAACTGGGCGGAGCCTATAGAATCCTACCCCTTGCACGCGTTC
GACAAAGTCGTGTCTCTTAACCTTACGTCTCTCTTCAGTCTCACCCGCCT
GGCATTGCCTCTTCTCGAAGCAGCTGCCACGCCCCACGACCCCGCTCGGG
TCATCAATATAGGATCCATTGATGGGAAGCGCGTGACGCTCATCGACCAC
TTCGCCTACTCCTCCTCCAAAGCCGCCGTGCACCGACTCTCCAGGGTCCT
GGCCGGAAAGTTAGGCCACCGGAACATAACCGTCAACGCCTTGGCCCCGG
GGCCGTTTGCGAGCAAGATGATGAAGGTGACGTTGGAGCGAGCGCGAGAG
GAGATAGAAGGGAGTGCGGCCTTGGGGAGAATCGGGCATCCAGAGGACAT
TGCGGGTGCGGCCTTGTTCCTGGCCTCGCGTGCAGGGGCCTACGTAACGG
GCGCGGTGCTGGTGGTGGATGGGGGCATCCTGGTCAAGCCCAAGTTATGA
GGGCGGGAGGGAGG

protein sequence of jgi.p|Nanoce1779_2|674200

>mRNA_9678-protein ID=mRNA_9678-protein|Name=jgi.p|Nanoce1779_2|674200|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp
MSLLLALRKHSSDNNNYNSVMAPSSIASSSSSLSISHLFDVTGKTVLITG
GGTGIGRMLAQGFVDNGARVFIASRREAKQAAAEIVGASSLPPSLAFCRG
LTADLAKGEGEQTALLAAVAKETGGKLHVLINNAGTNWAEPIESYPLHAF
DKVVSLNLTSLFSLTRLALPLLEAAATPHDPARVINIGSIDGKRVTLIDH
FAYSSSKAAVHRLSRVLAGKLGHRNITVNALAPGPFASKMMKVTLERARE
EIEGSAALGRIGHPEDIAGAALFLASRAGAYVTGAVLVVDGGILVKPKL*

mRNA from alignment at scaffold_38:82655..84465+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9678 ID=mRNA_9678|Name=jgi.p|Nanoce1779_2|674200|organism=Nannochloropsis oceanica|type=mRNA|length=1811bp|location=Sequence derived from alignment at scaffold_38:82655..84465+ (Nannochloropsis oceanica)
ATGTCTCTGCTCCTCGCCCTACGAAAACACAGCAGCGACAACAACAATTA
CAACAGTGTCATGGCCCCTTCTTCCATCGCCTCTTCTTCTTCATCTCTTT
CTATTAGCCATCTCTTTGACGTGACGGGCAAGACAGTCCTCATTACAGGC
GGCGGCACGGGCATCGGCCGCATGCTGGCTCAAGGCTTCGTTGACAATGG
TCAGGTGTTGTAACAGAAGTTTTCATGCCTCCTTCTTTTTGTGTGCGTGG
GTCATGAGCGTGCATACTGACGCGTAGGCTAGCATCCTAACTTATTTCAC
GAATTCATGCTGCCCTCCCGAACGCCCCGCGCCTCCCCGCAACGTGACCC
TTCCAGTACTCCCCCCCACTCCTGTTGACTTCTTTCCTCCCTTTTCCCTC
CCCCCTTTTCCACTTTTCATGAAAAGGTGCCCGAGTCTTTATCGCCTCTC
GAAGAGAAGCCAAGCAAGCCGCGGCGGAAATCGTTGGCGCCTCCTCCCTC
CCTCCCTCCCTTGCCTTCTGTCGAGGCCTCACAGCAGATCTGGCCAAGGG
GGAAGGCGAGCAGGTGCGGGTATAGATGTGGCCAAAAATTGATGACGGAG
GGAAGGGGGAGGACAGGCTTCCCTACTACATTCAATCGCATGTCCGCAAT
CCTTACCCCCCTTCGTCCCTTGGACTCGACCCGGTCTTCCTCCCCCACGA
TTCAGACCGCCCTCTTAGCAGCAGTGGCCAAGGAGACGGGTGGCAAGTTA
CACGTTCTTATCAACAATGCGGGTACCAACTGGGCGGAGCCTATAGAATC
CTACCCCTTGCACGTACGTGGGGAGGCAAGGAAGGAGAGGGAGGAACAGA
GGGCGACGGTCCAAGTGATCCCTGTTATCCACTCTCCCGTCTTTTCCTTC
TCTTGCAGGCGTTCGACAAAGTCGTGTCTCTTAACCTTACGTCTCTCTTC
AGTCTCACCCGCCTGGCATTGCCTCTTCTCGAAGCAGCTGCCACGCCCCA
CGACCCCGCTCGGGTCATCAATATAGGTAGGTGGATGCTCCCCTTTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCTCAGCCTCCTCTTCCCCTTTTCCT
TCCCACACATAGGATCCATTGATGGGAAGCGCGTGACGCTCATCGACCAC
TTCGCCTACTCCTCCTCCAAAGCCGCCGTGCACCGACTCTCCAGGGTCCT
GGCCGGAAAGTTAGGTAGGGCCTCCCTCCCTCCCTCCTTTCCTCCCTCCC
TCCCCCCTTCCTTCCTTCTTTCCTTCCTTCCCTCAAGAGGTCTCCTTTAC
CAAGAGGTATCCTCTGTTTTCCAAGAAAAATGGCATTCATCGATAACAGA
ATTCAGAAGAACCTCCCCCTCCCCCTCCCTCCCTCCTTCCCTCCCCCCCT
CTCTCCCTTAGGCCACCGGAACATAACCGTCAACGCCTTGGCCCCGGGGC
CGTTTGCGAGCAAGATGATGAAGGTGACGTTGGAGCGAGCGCGAGAGGAG
ATAGAAGGGAGTGCGGCCTTGGGGAGAATCGGGCATCCAGAGGTAGGGAG
GGAGGGAGGGAAGGACGGGGGGAGAAGGAGGAGGAGGGGGATCGGAACAG
ACAGTCACACAGGCAATGCAGGGGGCCCACCCCCTGCGTGTGTTCTGACC
CTGCCCTGCCTCCCTCCCTCCCTCCCTCCCTGCTTCCGTCAGGACATTGC
GGGTGCGGCCTTGTTCCTGGCCTCGCGTGCAGGGGCCTACGTAACGGGCG
CGGTGCTGGTGGTGGATGGGGGCATCCTGGTCAAGCCCAAGTTATGAGGG
CGGGAGGGAGG

Coding sequence (CDS) from alignment at scaffold_38:82655..84465+

>mRNA_9678 ID=mRNA_9678|Name=jgi.p|Nanoce1779_2|674200|organism=Nannochloropsis oceanica|type=CDS|length=6300bp|location=Sequence derived from alignment at scaffold_38:82655..84465+ (Nannochloropsis oceanica)
ATGTCTCTGCTCCTCGCCCTACGAAAACACAGCAGCGACAACAACAATTA
CAACAGTGTCATGGCCCCTTCTTCCATCGCCTCTTCTTCTTCATCTCTTT
CTATTAGCCATCTCTTTGACGTGACGGGCAAGACAGTCCTCATTACAGGC
GGCGGCACGGGCATCGGCCGCATGCTGGCTCAAGGCTTCGTTGACAATGG
TGCCCGAGTCTTTATCGCCTCTCGAAGAGAAGCCAAGCAAGCCGCGGCGG
AAATCGTTGGCGCCTCCTCCCTCCCTCCCTCCCTTGCCTTCTGTCGAGGC
CTCACAGCAGATCTGGCCAAGGGGGAAGGCGAGCAGACCGCCCTCTTAGC
AGCAGTGGCCAAGGAGACGGGTGGCAAGTTACACGTTCTTATCAACAATG
CGGGTACCAACTGGGCGGAGCCTATAGAATCCTACCCCTTGCACGCGTTC
GACAAAGTCGTGTCTCTTAACCTTACGTCTCTCTTCAGTCTCACCCGCCT
GGCATTGCCTCTTCTCGAAGCAGCTGCCACGCCCCACGACCCCGCTCGGG
TCATCAATATAGGATCCATTGATGGGAAGCGCGTGACGCTCATCGACCAC
TTCGCCTACTCCTCCTCCAAAGCCGCCGTGCACCGACTCTCCAGGGTCCT
GGCCGGAAAGTTAGGCCACCGGAACATAACCGTCAACGCCTTGGCCCCGG
GGCCGTTTGCGAGCAAGATGATGAAGGTGACGTTGGAGCGAGCGCGAGAG
GAGATAGAAGGGAGTGCGGCCTTGGGGAGAATCGGGCATCCAGAGGACAT
TGCGGGTGCGGCCTTGTTCCTGGCCTCGCGTGCAGGGGCCTACGTAACGG
GCGCGGTGCTGGTGGTGGATGGGGGCATCCTGGTCAAGCCCAAGTTATGA
ATGTCTCTGCTCCTCGCCCTACGAAAACACAGCAGCGACAACAACAATTA
CAACAGTGTCATGGCCCCTTCTTCCATCGCCTCTTCTTCTTCATCTCTTT
CTATTAGCCATCTCTTTGACGTGACGGGCAAGACAGTCCTCATTACAGGC
GGCGGCACGGGCATCGGCCGCATGCTGGCTCAAGGCTTCGTTGACAATGG
TGCCCGAGTCTTTATCGCCTCTCGAAGAGAAGCCAAGCAAGCCGCGGCGG
AAATCGTTGGCGCCTCCTCCCTCCCTCCCTCCCTTGCCTTCTGTCGAGGC
CTCACAGCAGATCTGGCCAAGGGGGAAGGCGAGCAGACCGCCCTCTTAGC
AGCAGTGGCCAAGGAGACGGGTGGCAAGTTACACGTTCTTATCAACAATG
CGGGTACCAACTGGGCGGAGCCTATAGAATCCTACCCCTTGCACGCGTTC
GACAAAGTCGTGTCTCTTAACCTTACGTCTCTCTTCAGTCTCACCCGCCT
GGCATTGCCTCTTCTCGAAGCAGCTGCCACGCCCCACGACCCCGCTCGGG
TCATCAATATAGGATCCATTGATGGGAAGCGCGTGACGCTCATCGACCAC
TTCGCCTACTCCTCCTCCAAAGCCGCCGTGCACCGACTCTCCAGGGTCCT
GGCCGGAAAGTTAGGCCACCGGAACATAACCGTCAACGCCTTGGCCCCGG
GGCCGTTTGCGAGCAAGATGATGAAGGTGACGTTGGAGCGAGCGCGAGAG
GAGATAGAAGGGAGTGCGGCCTTGGGGAGAATCGGGCATCCAGAGGACAT
TGCGGGTGCGGCCTTGTTCCTGGCCTCGCGTGCAGGGGCCTACGTAACGG
GCGCGGTGCTGGTGGTGGATGGGGGCATCCTGGTCAAGCCCAAGTTATGA
ATGTCTCTGCTCCTCGCCCTACGAAAACACAGCAGCGACAACAACAATTA
CAACAGTGTCATGGCCCCTTCTTCCATCGCCTCTTCTTCTTCATCTCTTT
CTATTAGCCATCTCTTTGACGTGACGGGCAAGACAGTCCTCATTACAGGC
GGCGGCACGGGCATCGGCCGCATGCTGGCTCAAGGCTTCGTTGACAATGG
TGCCCGAGTCTTTATCGCCTCTCGAAGAGAAGCCAAGCAAGCCGCGGCGG
AAATCGTTGGCGCCTCCTCCCTCCCTCCCTCCCTTGCCTTCTGTCGAGGC
CTCACAGCAGATCTGGCCAAGGGGGAAGGCGAGCAGACCGCCCTCTTAGC
AGCAGTGGCCAAGGAGACGGGTGGCAAGTTACACGTTCTTATCAACAATG
CGGGTACCAACTGGGCGGAGCCTATAGAATCCTACCCCTTGCACGCGTTC
GACAAAGTCGTGTCTCTTAACCTTACGTCTCTCTTCAGTCTCACCCGCCT
GGCATTGCCTCTTCTCGAAGCAGCTGCCACGCCCCACGACCCCGCTCGGG
TCATCAATATAGGATCCATTGATGGGAAGCGCGTGACGCTCATCGACCAC
TTCGCCTACTCCTCCTCCAAAGCCGCCGTGCACCGACTCTCCAGGGTCCT
GGCCGGAAAGTTAGGCCACCGGAACATAACCGTCAACGCCTTGGCCCCGG
GGCCGTTTGCGAGCAAGATGATGAAGGTGACGTTGGAGCGAGCGCGAGAG
GAGATAGAAGGGAGTGCGGCCTTGGGGAGAATCGGGCATCCAGAGGACAT
TGCGGGTGCGGCCTTGTTCCTGGCCTCGCGTGCAGGGGCCTACGTAACGG
GCGCGGTGCTGGTGGTGGATGGGGGCATCCTGGTCAAGCCCAAGTTATGA
ATGTCTCTGCTCCTCGCCCTACGAAAACACAGCAGCGACAACAACAATTA
CAACAGTGTCATGGCCCCTTCTTCCATCGCCTCTTCTTCTTCATCTCTTT
CTATTAGCCATCTCTTTGACGTGACGGGCAAGACAGTCCTCATTACAGGC
GGCGGCACGGGCATCGGCCGCATGCTGGCTCAAGGCTTCGTTGACAATGG
TGCCCGAGTCTTTATCGCCTCTCGAAGAGAAGCCAAGCAAGCCGCGGCGG
AAATCGTTGGCGCCTCCTCCCTCCCTCCCTCCCTTGCCTTCTGTCGAGGC
CTCACAGCAGATCTGGCCAAGGGGGAAGGCGAGCAGACCGCCCTCTTAGC
AGCAGTGGCCAAGGAGACGGGTGGCAAGTTACACGTTCTTATCAACAATG
CGGGTACCAACTGGGCGGAGCCTATAGAATCCTACCCCTTGCACGCGTTC
GACAAAGTCGTGTCTCTTAACCTTACGTCTCTCTTCAGTCTCACCCGCCT
GGCATTGCCTCTTCTCGAAGCAGCTGCCACGCCCCACGACCCCGCTCGGG
TCATCAATATAGGATCCATTGATGGGAAGCGCGTGACGCTCATCGACCAC
TTCGCCTACTCCTCCTCCAAAGCCGCCGTGCACCGACTCTCCAGGGTCCT
GGCCGGAAAGTTAGGCCACCGGAACATAACCGTCAACGCCTTGGCCCCGG
GGCCGTTTGCGAGCAAGATGATGAAGGTGACGTTGGAGCGAGCGCGAGAG
GAGATAGAAGGGAGTGCGGCCTTGGGGAGAATCGGGCATCCAGAGGACAT
TGCGGGTGCGGCCTTGTTCCTGGCCTCGCGTGCAGGGGCCTACGTAACGG
GCGCGGTGCTGGTGGTGGATGGGGGCATCCTGGTCAAGCCCAAGTTATGA
ATGTCTCTGCTCCTCGCCCTACGAAAACACAGCAGCGACAACAACAATTA
CAACAGTGTCATGGCCCCTTCTTCCATCGCCTCTTCTTCTTCATCTCTTT
CTATTAGCCATCTCTTTGACGTGACGGGCAAGACAGTCCTCATTACAGGC
GGCGGCACGGGCATCGGCCGCATGCTGGCTCAAGGCTTCGTTGACAATGG
TGCCCGAGTCTTTATCGCCTCTCGAAGAGAAGCCAAGCAAGCCGCGGCGG
AAATCGTTGGCGCCTCCTCCCTCCCTCCCTCCCTTGCCTTCTGTCGAGGC
CTCACAGCAGATCTGGCCAAGGGGGAAGGCGAGCAGACCGCCCTCTTAGC
AGCAGTGGCCAAGGAGACGGGTGGCAAGTTACACGTTCTTATCAACAATG
CGGGTACCAACTGGGCGGAGCCTATAGAATCCTACCCCTTGCACGCGTTC
GACAAAGTCGTGTCTCTTAACCTTACGTCTCTCTTCAGTCTCACCCGCCT
GGCATTGCCTCTTCTCGAAGCAGCTGCCACGCCCCACGACCCCGCTCGGG
TCATCAATATAGGATCCATTGATGGGAAGCGCGTGACGCTCATCGACCAC
TTCGCCTACTCCTCCTCCAAAGCCGCCGTGCACCGACTCTCCAGGGTCCT
GGCCGGAAAGTTAGGCCACCGGAACATAACCGTCAACGCCTTGGCCCCGG
GGCCGTTTGCGAGCAAGATGATGAAGGTGACGTTGGAGCGAGCGCGAGAG
GAGATAGAAGGGAGTGCGGCCTTGGGGAGAATCGGGCATCCAGAGGACAT
TGCGGGTGCGGCCTTGTTCCTGGCCTCGCGTGCAGGGGCCTACGTAACGG
GCGCGGTGCTGGTGGTGGATGGGGGCATCCTGGTCAAGCCCAAGTTATGA
ATGTCTCTGCTCCTCGCCCTACGAAAACACAGCAGCGACAACAACAATTA
CAACAGTGTCATGGCCCCTTCTTCCATCGCCTCTTCTTCTTCATCTCTTT
CTATTAGCCATCTCTTTGACGTGACGGGCAAGACAGTCCTCATTACAGGC
GGCGGCACGGGCATCGGCCGCATGCTGGCTCAAGGCTTCGTTGACAATGG
TGCCCGAGTCTTTATCGCCTCTCGAAGAGAAGCCAAGCAAGCCGCGGCGG
AAATCGTTGGCGCCTCCTCCCTCCCTCCCTCCCTTGCCTTCTGTCGAGGC
CTCACAGCAGATCTGGCCAAGGGGGAAGGCGAGCAGACCGCCCTCTTAGC
AGCAGTGGCCAAGGAGACGGGTGGCAAGTTACACGTTCTTATCAACAATG
CGGGTACCAACTGGGCGGAGCCTATAGAATCCTACCCCTTGCACGCGTTC
GACAAAGTCGTGTCTCTTAACCTTACGTCTCTCTTCAGTCTCACCCGCCT
GGCATTGCCTCTTCTCGAAGCAGCTGCCACGCCCCACGACCCCGCTCGGG
TCATCAATATAGGATCCATTGATGGGAAGCGCGTGACGCTCATCGACCAC
TTCGCCTACTCCTCCTCCAAAGCCGCCGTGCACCGACTCTCCAGGGTCCT
GGCCGGAAAGTTAGGCCACCGGAACATAACCGTCAACGCCTTGGCCCCGG
GGCCGTTTGCGAGCAAGATGATGAAGGTGACGTTGGAGCGAGCGCGAGAG
GAGATAGAAGGGAGTGCGGCCTTGGGGAGAATCGGGCATCCAGAGGACAT
TGCGGGTGCGGCCTTGTTCCTGGCCTCGCGTGCAGGGGCCTACGTAACGG
GCGCGGTGCTGGTGGTGGATGGGGGCATCCTGGTCAAGCCCAAGTTATGA
ATGTCTCTGCTCCTCGCCCTACGAAAACACAGCAGCGACAACAACAATTA
CAACAGTGTCATGGCCCCTTCTTCCATCGCCTCTTCTTCTTCATCTCTTT
CTATTAGCCATCTCTTTGACGTGACGGGCAAGACAGTCCTCATTACAGGC
GGCGGCACGGGCATCGGCCGCATGCTGGCTCAAGGCTTCGTTGACAATGG
TGCCCGAGTCTTTATCGCCTCTCGAAGAGAAGCCAAGCAAGCCGCGGCGG
AAATCGTTGGCGCCTCCTCCCTCCCTCCCTCCCTTGCCTTCTGTCGAGGC
CTCACAGCAGATCTGGCCAAGGGGGAAGGCGAGCAGACCGCCCTCTTAGC
AGCAGTGGCCAAGGAGACGGGTGGCAAGTTACACGTTCTTATCAACAATG
CGGGTACCAACTGGGCGGAGCCTATAGAATCCTACCCCTTGCACGCGTTC
GACAAAGTCGTGTCTCTTAACCTTACGTCTCTCTTCAGTCTCACCCGCCT
GGCATTGCCTCTTCTCGAAGCAGCTGCCACGCCCCACGACCCCGCTCGGG
TCATCAATATAGGATCCATTGATGGGAAGCGCGTGACGCTCATCGACCAC
TTCGCCTACTCCTCCTCCAAAGCCGCCGTGCACCGACTCTCCAGGGTCCT
GGCCGGAAAGTTAGGCCACCGGAACATAACCGTCAACGCCTTGGCCCCGG
GGCCGTTTGCGAGCAAGATGATGAAGGTGACGTTGGAGCGAGCGCGAGAG
GAGATAGAAGGGAGTGCGGCCTTGGGGAGAATCGGGCATCCAGAGGACAT
TGCGGGTGCGGCCTTGTTCCTGGCCTCGCGTGCAGGGGCCTACGTAACGG
GCGCGGTGCTGGTGGTGGATGGGGGCATCCTGGTCAAGCCCAAGTTATGA

Synonyms

Publications