jgi.p|Nanoce1779_2|324055, mRNA_9970 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|324055
Unique Name	mRNA_9970
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1108
Alignment location	scaffold_49:55096..56758 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	324141
Track	FilteredModels2
ProteinId	324055

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_49	supercontig	scaffold_49:55096..56758 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|324055	gene_9970	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|324055	mRNA_9970-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9970	CDS_9970	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_49:55096..56758+
coding sequence from alignment at scaffold_49:55096..56758+

mRNA sequence

>mRNA_9970 ID=mRNA_9970|Name=jgi.p|Nanoce1779_2|324055|organism=Nannochloropsis oceanica|type=mRNA|length=1108bp
TCCCGCCCTGTAGCGTCCCGTCGGCCTCCCCCTCCTGTGGCCTGGACTTA
TGATACCTTCGACCCGGATGACAGGATGGCGGACAAGGACGAGGAAGGGA
TGGAGGGGGACTTGAGGGGTGGATGGGGTGGTTCTGAAAGCAGTGGGTAC
GAGGAGAAGGACGGGGAGGAAGACGGGAGGGAGGAGGGAGGTTGAGGAGC
TGTACATCCAAGAAGGGATGACTCTAAAGGACAAGAAAGACAAGGCGGCC
GTGCAGAGGATCTTGACATGGGAGGGAGGGGAGGAGGGAGGGGTGAAGAT
GACGGTGACGGACAAGCACCATCTGAACATGCTGGCAGACAACCGGCCGC
ACCAGGGATTCGTTCTCCGTGCGAAGCCCCTGGACTATATCGACATCGAT
GCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGCTACACCTCCTCCTCCTCT
TGCCGCGATCAACGCCGACCAACCGCAAGACCAGCCGCGGCAGCAGCAGC
AGCAACAGCAACAGCACGACAAACATCTCTCTCATCCTCATCACCAGCAG
CAGCAAGAGCATTGGCTCGCCTTGGACGAGGTTTGGGACCCCCAGAATTT
CGGGGCCTTGTTGAGAAGCGCCTATTACCTCGGGATGAAGGGCGTGGTGG
TGTGTGCGAAAAACAGTGCCGCTCTCTCCCCTGCTGTGAGTAAAGCCAGC
GCGGGAGCGCTAGAGCTCATGCCGGTGTATGCAGTTAAGAACATGGTGCG
GTTTTTGGACAAGTGCAAGGAGGAAGGTTTTGCCATTATGGGTACTTCCC
TCGAGCCGGCCTCACTCCCTCTATCACAGGTAAAGATCGCCAGGCCCACG
GTATTAGTGCTCGGAAACGAGGGACACGGCGTACGAACGAACGTGGCTCG
GGCCTGCGATATCCAAGTCAGGATCGAGGGCGGGGGGGAGGGCGGGGGAG
AGGTGGACTCGTTGAACGTGAGTGTGACGGGAGGGATTTTGATGCACTTT
TTGCTGAGTCAGCAGCAGCAGCAGCAGTAGCAGTAACAAAAAGAGTAGTG
GAAGCAGCAGCAGCAGTAGCAGTAACAAAAAGAGTAGTGGAAGCAGCAGC
AGCAGCAA

protein sequence of jgi.p|Nanoce1779_2|324055

>mRNA_9970-protein ID=mRNA_9970-protein|Name=jgi.p|Nanoce1779_2|324055|organism=Nannochloropsis oceanica|type=polypeptide|length=271bp
MTLKDKKDKAAVQRILTWEGGEEGGVKMTVTDKHHLNMLADNRPHQGFVL
RAKPLDYIDIDALPPSLPPSLATPPPPLAAINADQPQDQPRQQQQQQQQH
DKHLSHPHHQQQQEHWLALDEVWDPQNFGALLRSAYYLGMKGVVVCAKNS
AALSPAVSKASAGALELMPVYAVKNMVRFLDKCKEEGFAIMGTSLEPASL
PLSQVKIARPTVLVLGNEGHGVRTNVARACDIQVRIEGGGEGGGEVDSLN
VSVTGGILMHFLLSQQQQQQ*

mRNA from alignment at scaffold_49:55096..56758+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9970 ID=mRNA_9970|Name=jgi.p|Nanoce1779_2|324055|organism=Nannochloropsis oceanica|type=mRNA|length=1663bp|location=Sequence derived from alignment at scaffold_49:55096..56758+ (Nannochloropsis oceanica)
TCCCGCCCTGTAGCGTCCCGTCGGCCTCCCCCTCCTGTGGCCTGGACTTA
TGATACCTTCGACCCGGATGACAGGATGGCGGACAAGGACGAGGAAGGGA
TGGAGGGGGACTTGAGGGGTGGATGGGGTGGTTCTGAAAGCAGTGGGTAC
GAGGAGAAGGACGGGGAGGAAGACGGGAGGGAGGCGGGAGTGAGTCGAGC
GGGCGGCCCCAGGGTGATGGAGGGGTATGATTACCTGTACGGCGTTAACG
TGGTGCTGGCGGCGCTGAGGTCGGGAAGGAGGGAGGTTGAGGAGCTGTAC
ATCCAAGAAGGGATGACTCTAAAGGACAAGAAAGACAAGGCGGCCGTGCA
GAGGATCTTGACATGGGAGGGAGGGGAGGAGGGAGGGGTGAAGATGACGG
TGACGGACAAGCACCATCTGAACATGCTGGCAGACAACCGGCCGGTGAGG
AAGGGAGGGAGAGAGGAAGGAAGATAGGGAGGGGACGTCGATTTGGCTTC
TTGTTTCTGGTGATGATTTTAATGTCAATATTCGCCCCCGTTGACCACCC
TTTCTACGTCCCTTCCTCCCCCCCTCTCTCGCTCCCTCCCTCCCTCAGCA
CCAGGGATTCGTTCTCCGTGCGAAGCCCCTGGACTATATCGACATCGATG
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCGCTACACCTCCTCCTCCTCTT
GCCGCGATCAACGCCGACCAACCGCAAGACCAGCCGCGGCAGCAGCAGCA
GCAACAGCAACAGCACGACAAACATCTCTCTCATCCTCATCACCAGCAGC
AGCAAGAGCATTGGCTCGCCTTGGACGAGGTTTGGGACCCCCAGAATTTC
GGGGCCTTGTTGAGAAGCGCCTATTACCTCGGGATGAAGGGCGTGGTGGT
GTGTGCGAAAAACAGTGCCGCTCTCTCCCCTGCTGTGAGTAAAGCCAGCG
CGGGAGCGCTAGAGCTCATGCCGGTGTATGCAGGTATGGTGGTGGCGATC
CCACCCTCCCTCCCTCCCTCCCTCCGTCCTACCTTTCTCCTCGCTTCCCC
CTGTTGCTTTACGATTGATCTCATTTGCCATTATAAGAAGACTTATCTCT
CACACCCTCCCTCCCTCCCTCTCTCCTTCAGTTAAGAACATGGTGCGGTT
TTTGGACAAGTGCAAGGAGGAAGGTTTTGCCATTATGGGTACTTCCCTCG
AGCCGGCCTCACTCCCTCTATCACAGGTAAGGGTGGAGAACGCAACCCTC
CCTCGCTTCTTCCCTCCCCCCCTCCCTTCTTCCCTCCCGCCCTTTATCTT
CTTTTCCTTTCTTTCCTTACTCCAGGGATCATCTCAACACATCCTCCCTC
CCTCCGTCCCTCCCTCCGTTCCTCCCCCCCTCAGGTAAAGATCGCCAGGC
CCACGGTATTAGTGCTCGGAAACGAGGGACACGGCGTACGAACGAACGTG
GCTCGGGCCTGCGATATCCAAGTCAGGATCGAGGGCGGGGGGGAGGGCGG
GGGAGAGGTGGACTCGTTGAACGTGAGTGTGACGGGAGGGATTTTGATGC
ACTTTTTGCTGAGTCAGCAGCAGCAGCAGCAGTAGCAGTAACAAAAAGAG
TAGTGGAAGCAGCAGCAGCAGTAGCAGTAACAAAAAGAGTAGTGGAAGCA
GCAGCAGCAGCAA

Coding sequence (CDS) from alignment at scaffold_49:55096..56758+

>mRNA_9970 ID=mRNA_9970|Name=jgi.p|Nanoce1779_2|324055|organism=Nannochloropsis oceanica|type=CDS|length=3252bp|location=Sequence derived from alignment at scaffold_49:55096..56758+ (Nannochloropsis oceanica)
ATGACTCTAAAGGACAAGAAAGACAAGGCGGCCGTGCAGAGGATCTTGAC
ATGGGAGGGAGGGGAGGAGGGAGGGGTGAAGATGACGGTGACGGACAAGC
ACCATCTGAACATGCTGGCAGACAACCGGCCGCACCAGGGATTCGTTCTC
CGTGCGAAGCCCCTGGACTATATCGACATCGATGCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCGCTACACCTCCTCCTCCTCTTGCCGCGATCAACGCCG
ACCAACCGCAAGACCAGCCGCGGCAGCAGCAGCAGCAACAGCAACAGCAC
GACAAACATCTCTCTCATCCTCATCACCAGCAGCAGCAAGAGCATTGGCT
CGCCTTGGACGAGGTTTGGGACCCCCAGAATTTCGGGGCCTTGTTGAGAA
GCGCCTATTACCTCGGGATGAAGGGCGTGGTGGTGTGTGCGAAAAACAGT
GCCGCTCTCTCCCCTGCTGTGAGTAAAGCCAGCGCGGGAGCGCTAGAGCT
CATGCCGGTGTATGCAGTTAAGAACATGGTGCGGTTTTTGGACAAGTGCA
AGGAGGAAGGTTTTGCCATTATGGGTACTTCCCTCGAGCCGGCCTCACTC
CCTCTATCACAGGTAAAGATCGCCAGGCCCACGGTATTAGTGCTCGGAAA
CGAGGGACACGGCGTACGAACGAACGTGGCTCGGGCCTGCGATATCCAAG
TCAGGATCGAGGGCGGGGGGGAGGGCGGGGGAGAGGTGGACTCGTTGAAC
GTGAGTGTGACGGGAGGGATTTTGATGCACTTTTTGCTGAGTCAGCAGCA
GCAGCAGCAGTAGATGACTCTAAAGGACAAGAAAGACAAGGCGGCCGTGC
AGAGGATCTTGACATGGGAGGGAGGGGAGGAGGGAGGGGTGAAGATGACG
GTGACGGACAAGCACCATCTGAACATGCTGGCAGACAACCGGCCGCACCA
GGGATTCGTTCTCCGTGCGAAGCCCCTGGACTATATCGACATCGATGCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCGCTACACCTCCTCCTCCTCTTGCC
GCGATCAACGCCGACCAACCGCAAGACCAGCCGCGGCAGCAGCAGCAGCA
ACAGCAACAGCACGACAAACATCTCTCTCATCCTCATCACCAGCAGCAGC
AAGAGCATTGGCTCGCCTTGGACGAGGTTTGGGACCCCCAGAATTTCGGG
GCCTTGTTGAGAAGCGCCTATTACCTCGGGATGAAGGGCGTGGTGGTGTG
TGCGAAAAACAGTGCCGCTCTCTCCCCTGCTGTGAGTAAAGCCAGCGCGG
GAGCGCTAGAGCTCATGCCGGTGTATGCAGTTAAGAACATGGTGCGGTTT
TTGGACAAGTGCAAGGAGGAAGGTTTTGCCATTATGGGTACTTCCCTCGA
GCCGGCCTCACTCCCTCTATCACAGGTAAAGATCGCCAGGCCCACGGTAT
TAGTGCTCGGAAACGAGGGACACGGCGTACGAACGAACGTGGCTCGGGCC
TGCGATATCCAAGTCAGGATCGAGGGCGGGGGGGAGGGCGGGGGAGAGGT
GGACTCGTTGAACGTGAGTGTGACGGGAGGGATTTTGATGCACTTTTTGC
TGAGTCAGCAGCAGCAGCAGCAGTAGATGACTCTAAAGGACAAGAAAGAC
AAGGCGGCCGTGCAGAGGATCTTGACATGGGAGGGAGGGGAGGAGGGAGG
GGTGAAGATGACGGTGACGGACAAGCACCATCTGAACATGCTGGCAGACA
ACCGGCCGCACCAGGGATTCGTTCTCCGTGCGAAGCCCCTGGACTATATC
GACATCGATGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGCTACACCTCC
TCCTCCTCTTGCCGCGATCAACGCCGACCAACCGCAAGACCAGCCGCGGC
AGCAGCAGCAGCAACAGCAACAGCACGACAAACATCTCTCTCATCCTCAT
CACCAGCAGCAGCAAGAGCATTGGCTCGCCTTGGACGAGGTTTGGGACCC
CCAGAATTTCGGGGCCTTGTTGAGAAGCGCCTATTACCTCGGGATGAAGG
GCGTGGTGGTGTGTGCGAAAAACAGTGCCGCTCTCTCCCCTGCTGTGAGT
AAAGCCAGCGCGGGAGCGCTAGAGCTCATGCCGGTGTATGCAGTTAAGAA
CATGGTGCGGTTTTTGGACAAGTGCAAGGAGGAAGGTTTTGCCATTATGG
GTACTTCCCTCGAGCCGGCCTCACTCCCTCTATCACAGGTAAAGATCGCC
AGGCCCACGGTATTAGTGCTCGGAAACGAGGGACACGGCGTACGAACGAA
CGTGGCTCGGGCCTGCGATATCCAAGTCAGGATCGAGGGCGGGGGGGAGG
GCGGGGGAGAGGTGGACTCGTTGAACGTGAGTGTGACGGGAGGGATTTTG
ATGCACTTTTTGCTGAGTCAGCAGCAGCAGCAGCAGTAGATGACTCTAAA
GGACAAGAAAGACAAGGCGGCCGTGCAGAGGATCTTGACATGGGAGGGAG
GGGAGGAGGGAGGGGTGAAGATGACGGTGACGGACAAGCACCATCTGAAC
ATGCTGGCAGACAACCGGCCGCACCAGGGATTCGTTCTCCGTGCGAAGCC
CCTGGACTATATCGACATCGATGCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCGCTACACCTCCTCCTCCTCTTGCCGCGATCAACGCCGACCAACCGCAA
GACCAGCCGCGGCAGCAGCAGCAGCAACAGCAACAGCACGACAAACATCT
CTCTCATCCTCATCACCAGCAGCAGCAAGAGCATTGGCTCGCCTTGGACG
AGGTTTGGGACCCCCAGAATTTCGGGGCCTTGTTGAGAAGCGCCTATTAC
CTCGGGATGAAGGGCGTGGTGGTGTGTGCGAAAAACAGTGCCGCTCTCTC
CCCTGCTGTGAGTAAAGCCAGCGCGGGAGCGCTAGAGCTCATGCCGGTGT
ATGCAGTTAAGAACATGGTGCGGTTTTTGGACAAGTGCAAGGAGGAAGGT
TTTGCCATTATGGGTACTTCCCTCGAGCCGGCCTCACTCCCTCTATCACA
GGTAAAGATCGCCAGGCCCACGGTATTAGTGCTCGGAAACGAGGGACACG
GCGTACGAACGAACGTGGCTCGGGCCTGCGATATCCAAGTCAGGATCGAG
GGCGGGGGGGAGGGCGGGGGAGAGGTGGACTCGTTGAACGTGAGTGTGAC
GGGAGGGATTTTGATGCACTTTTTGCTGAGTCAGCAGCAGCAGCAGCAGT
AG

Synonyms

Publications