jgi.p|Nanoce1779_2|342474, mRNA_10234 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|342474
Unique NamemRNA_10234
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length893
Alignment locationscaffold_50:82997..83889 +

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Properties
Property NameValue
TranscriptId342560
TrackFilteredModels2
ProteinId342474
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_50supercontigscaffold_50:82997..83889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|342474gene_10234Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|342474mRNA_10234-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10234CDS_10234Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10234 ID=mRNA_10234|Name=jgi.p|Nanoce1779_2|342474|organism=Nannochloropsis oceanica|type=mRNA|length=893bp
TATGCATGTACAGGGCATACGCGTCCCTATAACAGAAGGAGCGAGGCCGC
CGTCGTGAGAGGCGTGGATATAGTGTGCGACCAGCGACGACATAAGAAGG
TGAGCGACCTGAAGCGTTTTTAAGGACATACACGACACTGGCACGACAAC
GTCTACTGCGGCTACGACCATCCGTGCAACCGAGCGATACGTCATCAGGC
TACACTAGCGAACGCGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCGACAGCAACAACTTTCAGTAGCGGAAGACGAG
GAAGAGGATCTGTTCCAAGAACAGGCAAAAGAGCAATATGGCAGGCACCG
TCACCAACTCCATGAGTCCCACAAGAAGCAGTCGGAGAAAACGCATGGAC
CCCGTACCAGGCGTTGACGGAGGGAACAAGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGTAGATGCGTTTGGGTCCTTGCAGACCTCGCCATCGTCCTCGG
TGGCGTCATCGCCTTCATCAAGACGTCCCACAACGGAAATTGAAGAGGAG
GATGAGAATGGAGAAGAGGAGGAGGAGGACGAGGAACCACCGCAGCAGCA
GCAGCAGCCCCAGCAACAGCAACAACGACAGCAAGAGCAGACGGCGCTGG
AACACATGGAGAGGAAGCTGCACCGCAGGTCGCAAGGGAAGACAAGTGGT
GGAGCGGACGTGAAGCAAAAAAGGGTAAGAAAAGGAGAGGAAGGAGGGAG
GGGGGGAGGCAGGGGCGAGGGCCCTTGGGCTGCACGTACCTAGATCACAT
GTTGATTTTTGGTGCTTATCTTTCTTGTCCTCCCTCTCCTCTTCTCTCTC
CCTCTCCTTTTCCCTCCCTCCTTCCCTCTCTCCCTCCCTCCCC
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protein sequence of jgi.p|Nanoce1779_2|342474

>mRNA_10234-protein ID=mRNA_10234-protein|Name=jgi.p|Nanoce1779_2|342474|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MAGTVTNSMSPTRSSRRKRMDPVPGVDGGNKREGGREGGRVDAFGSLQTS
PSSSVASSPSSRRPTTEIEEEDENGEEEEEDEEPPQQQQQPQQQQQRQQE
QTALEHMERKLHRRSQGKTSGGADVKQKRVRKGEEGGRGGGRGEGPWAAR
T*
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mRNA from alignment at scaffold_50:82997..83889+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10234 ID=mRNA_10234|Name=jgi.p|Nanoce1779_2|342474|organism=Nannochloropsis oceanica|type=mRNA|length=893bp|location=Sequence derived from alignment at scaffold_50:82997..83889+ (Nannochloropsis oceanica)
TATGCATGTACAGGGCATACGCGTCCCTATAACAGAAGGAGCGAGGCCGC
CGTCGTGAGAGGCGTGGATATAGTGTGCGACCAGCGACGACATAAGAAGG
TGAGCGACCTGAAGCGTTTTTAAGGACATACACGACACTGGCACGACAAC
GTCTACTGCGGCTACGACCATCCGTGCAACCGAGCGATACGTCATCAGGC
TACACTAGCGAACGCGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCGACAGCAACAACTTTCAGTAGCGGAAGACGAG
GAAGAGGATCTGTTCCAAGAACAGGCAAAAGAGCAATATGGCAGGCACCG
TCACCAACTCCATGAGTCCCACAAGAAGCAGTCGGAGAAAACGCATGGAC
CCCGTACCAGGCGTTGACGGAGGGAACAAGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGTAGATGCGTTTGGGTCCTTGCAGACCTCGCCATCGTCCTCGG
TGGCGTCATCGCCTTCATCAAGACGTCCCACAACGGAAATTGAAGAGGAG
GATGAGAATGGAGAAGAGGAGGAGGAGGACGAGGAACCACCGCAGCAGCA
GCAGCAGCCCCAGCAACAGCAACAACGACAGCAAGAGCAGACGGCGCTGG
AACACATGGAGAGGAAGCTGCACCGCAGGTCGCAAGGGAAGACAAGTGGT
GGAGCGGACGTGAAGCAAAAAAGGGTAAGAAAAGGAGAGGAAGGAGGGAG
GGGGGGAGGCAGGGGCGAGGGCCCTTGGGCTGCACGTACCTAGATCACAT
GTTGATTTTTGGTGCTTATCTTTCTTGTCCTCCCTCTCCTCTTCTCTCTC
CCTCTCCTTTTCCCTCCCTCCTTCCCTCTCTCCCTCCCTCCCC
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Coding sequence (CDS) from alignment at scaffold_50:82997..83889+

>mRNA_10234 ID=mRNA_10234|Name=jgi.p|Nanoce1779_2|342474|organism=Nannochloropsis oceanica|type=CDS|length=456bp|location=Sequence derived from alignment at scaffold_50:82997..83889+ (Nannochloropsis oceanica)
ATGGCAGGCACCGTCACCAACTCCATGAGTCCCACAAGAAGCAGTCGGAG
AAAACGCATGGACCCCGTACCAGGCGTTGACGGAGGGAACAAGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGTAGATGCGTTTGGGTCCTTGCAGACCTCG
CCATCGTCCTCGGTGGCGTCATCGCCTTCATCAAGACGTCCCACAACGGA
AATTGAAGAGGAGGATGAGAATGGAGAAGAGGAGGAGGAGGACGAGGAAC
CACCGCAGCAGCAGCAGCAGCCCCAGCAACAGCAACAACGACAGCAAGAG
CAGACGGCGCTGGAACACATGGAGAGGAAGCTGCACCGCAGGTCGCAAGG
GAAGACAAGTGGTGGAGCGGACGTGAAGCAAAAAAGGGTAAGAAAAGGAG
AGGAAGGAGGGAGGGGGGGAGGCAGGGGCGAGGGCCCTTGGGCTGCACGT
ACCTAG
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Synonyms
Publications