jgi.p|Nanoce1779_2|448861, mRNA_11645 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|448861
Unique Name	mRNA_11645
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1170
Alignment location	scaffold_91:34521..36586 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	448947
Track	FilteredModels2
ProteinId	448861

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_91	supercontig	scaffold_91:34521..36586 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|448861	gene_11645	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|448861	mRNA_11645-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_11645	CDS_11645	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_91:34521..36586+
coding sequence from alignment at scaffold_91:34521..36586+

mRNA sequence

>mRNA_11645 ID=mRNA_11645|Name=jgi.p|Nanoce1779_2|448861|organism=Nannochloropsis oceanica|type=mRNA|length=1170bp
AGAGGAGGGAAGCGATATTCTCTTCTCCCTGTTAACCGGGCCCTCGCAAA
CGTGCACCAGGTCCTCAAGTATGAGATGTCGCGTCGTCCGTCCCTGACCG
GCGTGGGCGTTCTGGGGCTCGACGCCATTCACTGCCCCTTGCTGCGATTC
GTTGAGCAATTGAGGGGCAGGACGGGAGGGAGGGAGGGGCGGAAGGAGGG
GGGGTGCGGTTGTGCGTGCCACCGCCTACGTAGGGAGGAGGAGGGGGAGG
ACGACGGCGAAGGAGGGAGGACTGGGTCCGGTCGTCCTCTTTACTTCGTG
TCGGTGGACGTGCAGCGCTGCTATGACCATATCCAGGTGCACCGTCTCAT
GGACATCTTGCGAGACACCTTATCTGCGGAGGCCTACCACATCCGTCGGT
TTGCCGTCTCTCACCCTTTCCGCTCCCGGCACTCGATCCACATCAATCAC
CTCAAGGAGGCTTACCCCGAGGGCGGGTGGGAGGCTTTCCCCGATATTGC
CGCGAAGCTATCCCGGCATTATAAGGCCGCTGTGATGACGGACGGTGTGA
TCGAGTCCCGGCTATCGCGCGCCGAGGCGTTGACCCTCTTGGAGGAGCAC
CTGATGTGCAGCTTTGTCCATCTCCCGCAGCAGCAGCAGCAGCCGCAGCA
TCTGCAGCAGCGGCGGCGGAAGGGAGGAGGAGGGATGGAAGGAGGGCGGG
AGAAAGGAGCGGGAGGAAAGCAATGCGGGAGGCGGGTGCTGCGACAGATT
CGTGGCATTTCTCAAGGCTCGATCCTTTCCCCCGCTCTGTGCAACCTTTA
TCTGGGCCAGGCGGAAGGAGAAAAGGCGAGAGGAAGGGAGGGAGGGAGAG
GTCTCGCCTCCCTCGGAGGGAGGGAAGGGCATCATCGCCCTCTCTACTGG
TGAGGATGATTGACGACTATCTCTTCGTATCGACGTCGCGCCAGAAGGCA
GTGGCGTTCCTGGAGAGGGTGTACTCGGCCTTGCCGCCTGTTGGCATGCG
GGTGCACCCTGACAAGACGAAGACAAATTTCGCTTGCACCGTCCGAGTCA
GGGAAAGAAAGGACGAGAGGGAGGTAGGAGGACAGGCGGAGGACGAGGAT
CGGGGAGAGGGAGGGAATGAAGAGGAGCAGGAGATGAACATAGAGCCGGC
GGAGCTGCCAGTGCTGGTAA

protein sequence of jgi.p|Nanoce1779_2|448861

>mRNA_11645-protein ID=mRNA_11645-protein|Name=jgi.p|Nanoce1779_2|448861|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp
MSRRPSLTGVGVLGLDAIHCPLLRFVEQLRGRTGGREGRKEGGCGCACHR
LRREEEGEDDGEGGRTGSGRPLYFVSVDVQRCYDHIQVHRLMDILRDTLS
AEAYHIRRFAVSHPFRSRHSIHINHLKEAYPEGGWEAFPDIAAKLSRHYK
AAVMTDGVIESRLSRAEALTLLEEHLMCSFVHLPQQQQQPQHLQQRRRKG
GGGMEGGREKGAGGKQCGRRVLRQIRGISQGSILSPALCNLYLGQAEGEK
ARGREGGRGLASLGGREGHHRPLYW*

mRNA from alignment at scaffold_91:34521..36586+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11645 ID=mRNA_11645|Name=jgi.p|Nanoce1779_2|448861|organism=Nannochloropsis oceanica|type=mRNA|length=2066bp|location=Sequence derived from alignment at scaffold_91:34521..36586+ (Nannochloropsis oceanica)
AGAGGAGGGAAGCGATATTCTCTTCTCCCTGTTAACCGGGCCCTCGCAAA
CGTGCACCAGGTGAGGGCAGGCGGGAGGGAGGATGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGAATGGAAAGGGACCGAGGAACACGAGGA
ACATCACCTACATCTACGGCTGGACACGTCCAGCCACTTTTCACGACCAA
GCCTCCCTCCCTCCCTCCCTCCCTCCCGCCCTCCCTCAGGTCCTCAAGTA
TGAGATGTCGCGTCGTCCGTCCCTGACCGGCGTGGGCGTTCTGGGGCTCG
ACGCCATTCACTGCCCCTTGCTGCGATTCGTTGAGCAATTGAGGGGCAGG
ACGGGAGGGAGGGAGGGGCGGAAGGAGGGGGGGTGCGGTTGTGCGTGCCA
CCGCCTACGTAGGGAGGAGGAGGGGGAGGACGACGGCGAAGGAGGGAGGA
CTGGGTCCGGTCGTCCTCTTTACTTCGTGTCGGTGGACGTGCAGCGCTGC
TATGACCATATCCAGGTGCACCGTCTCATGGACATCTTGCGAGGTGGGGG
GGGAGGGAGGGGGGAGGGAAGGAGGGAGAAAGAGCTGGAGGGACTTTTTT
CGATGCCTTGCTATTTAGTGGCTGTCCCTCAAGTCGATGCTCGTCATCAG
TCTGGTGTCATGCTCTCATTCACTCACTCGCCCACTCCCTCCAACCCTCC
CTTCCTCCCGCCCTCCCACCTCTCAGACACCTTATCTGCGGAGGCCTACC
ACATCCGTCGGTTTGCCGTCTCTCACCCTTTCCGCTCCCGGCACTCGATC
CACATCAATCACCTCAAGGAGGCTTACCCCGAGGTAGGGAGGGAGGGAAG
GAGGACGGGACGGACGGAAGGAGGCTTGGCCATAGCGAGAGATGGGCCAT
CATTTTAACAACGCACACGGACGACAGGGCGGGTGGGAGGCTTTCCCCGA
TATTGCCGCGAAGCTATCCCGGCATTATAAGGTACGCCGGCCAAACTTCC
TTCCTCCCTTCTTCCTTCCCTTCCTCCCTCTTTCCTCTCCTAGTACCTTC
CCTCATCCCGCCCCCGGCCCACCCGCCCTCCCTCCTTCCCTCTTTCCCTC
CCCTCCAGGCCGCTGTGATGACGGACGGTGTGATCGAGTCCCGGCTATCG
CGCGCCGAGGCGTTGACCCTCTTGGAGGAGCACCTGATGTGCAGCTTTGT
CCATCTCCCGCAGCAGCAGCAGCAGCCGCAGCATCTGCAGCAGCGGCGGC
GGAAGGGAGGAGGAGGGATGGAAGGAGGGCGGGAGAAAGGAGCGGGAGGA
AAGCAATGCGGGAGGCGGGTGCTGCGACAGGTAATGAGCCCAGGGAAGCC
TGTCGGTTGCGATGTATCTGCTTCACTTACCCTGCCCTCCCCCCCTCCCT
CCCTTAGATTCGTGGCATTTCTCAAGGCTCGATCCTTTCCCCCGCTCTGT
GCAACCTTTATCTGGGCCAGGCGGAAGGAGAAAAGGCGAGAGGAAGGGAG
GGAGGGAGAGGTCTCGCCTCCCTCGTCCAAGAGGAAGAAAGGGAAGAGGA
AGGAGCGTGTGAGGCATGCCTCTGCAGCGGCCACAGGAAGGAGGGAGGGA
GGGAGGGAAGGGCATCATCGCCCTCTCTACTGGTGAGGATGATTGACGAC
TATCTCTTCGTATCGACGTCGCGCCAGAAGGCAGTGGCGTTCCTGGAGAG
GGTGTACTCGGCCTTGCCGCCTGTTGGTAAGGAGGGAGGGAGGGAGGGAG
GGAGGGGGGGTTGCGTTGGGCCTGTTTTGACGTGTGTAGCAGAGGGGGAG
GGAGAGAAGGGGGAGTGGAGGGAGAGAGAGAGACAGAGAGGGAGAAAGCA
ATCTTCAGCCGTCATCCTCATCCACTCGCGCCATGACAGGCATGCGGGTG
CACCCTGACAAGACGAAGACAAATTTCGCTTGCACCGTCCGAGTCAGGGA
AAGAAAGGACGAGAGGGAGGTAGGAGGACAGGCGGAGGACGAGGATCGGG
GAGAGGGAGGGAATGAAGAGGAGCAGGAGATGAACATAGAGCCGGCGGAG
CTGCCAGTGCTGGTAA

Coding sequence (CDS) from alignment at scaffold_91:34521..36586+

>mRNA_11645 ID=mRNA_11645|Name=jgi.p|Nanoce1779_2|448861|organism=Nannochloropsis oceanica|type=CDS|length=4968bp|location=Sequence derived from alignment at scaffold_91:34521..36586+ (Nannochloropsis oceanica)
ATGTCGCGTCGTCCGTCCCTGACCGGCGTGGGCGTTCTGGGGCTCGACGC
CATTCACTGCCCCTTGCTGCGATTCGTTGAGCAATTGAGGGGCAGGACGG
GAGGGAGGGAGGGGCGGAAGGAGGGGGGGTGCGGTTGTGCGTGCCACCGC
CTACGTAGGGAGGAGGAGGGGGAGGACGACGGCGAAGGAGGGAGGACTGG
GTCCGGTCGTCCTCTTTACTTCGTGTCGGTGGACGTGCAGCGCTGCTATG
ACCATATCCAGGTGCACCGTCTCATGGACATCTTGCGAGACACCTTATCT
GCGGAGGCCTACCACATCCGTCGGTTTGCCGTCTCTCACCCTTTCCGCTC
CCGGCACTCGATCCACATCAATCACCTCAAGGAGGCTTACCCCGAGGGCG
GGTGGGAGGCTTTCCCCGATATTGCCGCGAAGCTATCCCGGCATTATAAG
GCCGCTGTGATGACGGACGGTGTGATCGAGTCCCGGCTATCGCGCGCCGA
GGCGTTGACCCTCTTGGAGGAGCACCTGATGTGCAGCTTTGTCCATCTCC
CGCAGCAGCAGCAGCAGCCGCAGCATCTGCAGCAGCGGCGGCGGAAGGGA
GGAGGAGGGATGGAAGGAGGGCGGGAGAAAGGAGCGGGAGGAAAGCAATG
CGGGAGGCGGGTGCTGCGACAGATTCGTGGCATTTCTCAAGGCTCGATCC
TTTCCCCCGCTCTGTGCAACCTTTATCTGGGCCAGGCGGAAGGAGAAAAG
GCGAGAGGAAGGGAGGGAGGGAGAGGTCTCGCCTCCCTCGGAGGGAGGGA
AGGGCATCATCGCCCTCTCTACTGGTGAATGTCGCGTCGTCCGTCCCTGA
CCGGCGTGGGCGTTCTGGGGCTCGACGCCATTCACTGCCCCTTGCTGCGA
TTCGTTGAGCAATTGAGGGGCAGGACGGGAGGGAGGGAGGGGCGGAAGGA
GGGGGGGTGCGGTTGTGCGTGCCACCGCCTACGTAGGGAGGAGGAGGGGG
AGGACGACGGCGAAGGAGGGAGGACTGGGTCCGGTCGTCCTCTTTACTTC
GTGTCGGTGGACGTGCAGCGCTGCTATGACCATATCCAGGTGCACCGTCT
CATGGACATCTTGCGAGACACCTTATCTGCGGAGGCCTACCACATCCGTC
GGTTTGCCGTCTCTCACCCTTTCCGCTCCCGGCACTCGATCCACATCAAT
CACCTCAAGGAGGCTTACCCCGAGGGCGGGTGGGAGGCTTTCCCCGATAT
TGCCGCGAAGCTATCCCGGCATTATAAGGCCGCTGTGATGACGGACGGTG
TGATCGAGTCCCGGCTATCGCGCGCCGAGGCGTTGACCCTCTTGGAGGAG
CACCTGATGTGCAGCTTTGTCCATCTCCCGCAGCAGCAGCAGCAGCCGCA
GCATCTGCAGCAGCGGCGGCGGAAGGGAGGAGGAGGGATGGAAGGAGGGC
GGGAGAAAGGAGCGGGAGGAAAGCAATGCGGGAGGCGGGTGCTGCGACAG
ATTCGTGGCATTTCTCAAGGCTCGATCCTTTCCCCCGCTCTGTGCAACCT
TTATCTGGGCCAGGCGGAAGGAGAAAAGGCGAGAGGAAGGGAGGGAGGGA
GAGGTCTCGCCTCCCTCGGAGGGAGGGAAGGGCATCATCGCCCTCTCTAC
TGGTGAATGTCGCGTCGTCCGTCCCTGACCGGCGTGGGCGTTCTGGGGCT
CGACGCCATTCACTGCCCCTTGCTGCGATTCGTTGAGCAATTGAGGGGCA
GGACGGGAGGGAGGGAGGGGCGGAAGGAGGGGGGGTGCGGTTGTGCGTGC
CACCGCCTACGTAGGGAGGAGGAGGGGGAGGACGACGGCGAAGGAGGGAG
GACTGGGTCCGGTCGTCCTCTTTACTTCGTGTCGGTGGACGTGCAGCGCT
GCTATGACCATATCCAGGTGCACCGTCTCATGGACATCTTGCGAGACACC
TTATCTGCGGAGGCCTACCACATCCGTCGGTTTGCCGTCTCTCACCCTTT
CCGCTCCCGGCACTCGATCCACATCAATCACCTCAAGGAGGCTTACCCCG
AGGGCGGGTGGGAGGCTTTCCCCGATATTGCCGCGAAGCTATCCCGGCAT
TATAAGGCCGCTGTGATGACGGACGGTGTGATCGAGTCCCGGCTATCGCG
CGCCGAGGCGTTGACCCTCTTGGAGGAGCACCTGATGTGCAGCTTTGTCC
ATCTCCCGCAGCAGCAGCAGCAGCCGCAGCATCTGCAGCAGCGGCGGCGG
AAGGGAGGAGGAGGGATGGAAGGAGGGCGGGAGAAAGGAGCGGGAGGAAA
GCAATGCGGGAGGCGGGTGCTGCGACAGATTCGTGGCATTTCTCAAGGCT
CGATCCTTTCCCCCGCTCTGTGCAACCTTTATCTGGGCCAGGCGGAAGGA
GAAAAGGCGAGAGGAAGGGAGGGAGGGAGAGGTCTCGCCTCCCTCGGAGG
GAGGGAAGGGCATCATCGCCCTCTCTACTGGTGAATGTCGCGTCGTCCGT
CCCTGACCGGCGTGGGCGTTCTGGGGCTCGACGCCATTCACTGCCCCTTG
CTGCGATTCGTTGAGCAATTGAGGGGCAGGACGGGAGGGAGGGAGGGGCG
GAAGGAGGGGGGGTGCGGTTGTGCGTGCCACCGCCTACGTAGGGAGGAGG
AGGGGGAGGACGACGGCGAAGGAGGGAGGACTGGGTCCGGTCGTCCTCTT
TACTTCGTGTCGGTGGACGTGCAGCGCTGCTATGACCATATCCAGGTGCA
CCGTCTCATGGACATCTTGCGAGACACCTTATCTGCGGAGGCCTACCACA
TCCGTCGGTTTGCCGTCTCTCACCCTTTCCGCTCCCGGCACTCGATCCAC
ATCAATCACCTCAAGGAGGCTTACCCCGAGGGCGGGTGGGAGGCTTTCCC
CGATATTGCCGCGAAGCTATCCCGGCATTATAAGGCCGCTGTGATGACGG
ACGGTGTGATCGAGTCCCGGCTATCGCGCGCCGAGGCGTTGACCCTCTTG
GAGGAGCACCTGATGTGCAGCTTTGTCCATCTCCCGCAGCAGCAGCAGCA
GCCGCAGCATCTGCAGCAGCGGCGGCGGAAGGGAGGAGGAGGGATGGAAG
GAGGGCGGGAGAAAGGAGCGGGAGGAAAGCAATGCGGGAGGCGGGTGCTG
CGACAGATTCGTGGCATTTCTCAAGGCTCGATCCTTTCCCCCGCTCTGTG
CAACCTTTATCTGGGCCAGGCGGAAGGAGAAAAGGCGAGAGGAAGGGAGG
GAGGGAGAGGTCTCGCCTCCCTCGGAGGGAGGGAAGGGCATCATCGCCCT
CTCTACTGGTGAATGTCGCGTCGTCCGTCCCTGACCGGCGTGGGCGTTCT
GGGGCTCGACGCCATTCACTGCCCCTTGCTGCGATTCGTTGAGCAATTGA
GGGGCAGGACGGGAGGGAGGGAGGGGCGGAAGGAGGGGGGGTGCGGTTGT
GCGTGCCACCGCCTACGTAGGGAGGAGGAGGGGGAGGACGACGGCGAAGG
AGGGAGGACTGGGTCCGGTCGTCCTCTTTACTTCGTGTCGGTGGACGTGC
AGCGCTGCTATGACCATATCCAGGTGCACCGTCTCATGGACATCTTGCGA
GACACCTTATCTGCGGAGGCCTACCACATCCGTCGGTTTGCCGTCTCTCA
CCCTTTCCGCTCCCGGCACTCGATCCACATCAATCACCTCAAGGAGGCTT
ACCCCGAGGGCGGGTGGGAGGCTTTCCCCGATATTGCCGCGAAGCTATCC
CGGCATTATAAGGCCGCTGTGATGACGGACGGTGTGATCGAGTCCCGGCT
ATCGCGCGCCGAGGCGTTGACCCTCTTGGAGGAGCACCTGATGTGCAGCT
TTGTCCATCTCCCGCAGCAGCAGCAGCAGCCGCAGCATCTGCAGCAGCGG
CGGCGGAAGGGAGGAGGAGGGATGGAAGGAGGGCGGGAGAAAGGAGCGGG
AGGAAAGCAATGCGGGAGGCGGGTGCTGCGACAGATTCGTGGCATTTCTC
AAGGCTCGATCCTTTCCCCCGCTCTGTGCAACCTTTATCTGGGCCAGGCG
GAAGGAGAAAAGGCGAGAGGAAGGGAGGGAGGGAGAGGTCTCGCCTCCCT
CGGAGGGAGGGAAGGGCATCATCGCCCTCTCTACTGGTGAATGTCGCGTC
GTCCGTCCCTGACCGGCGTGGGCGTTCTGGGGCTCGACGCCATTCACTGC
CCCTTGCTGCGATTCGTTGAGCAATTGAGGGGCAGGACGGGAGGGAGGGA
GGGGCGGAAGGAGGGGGGGTGCGGTTGTGCGTGCCACCGCCTACGTAGGG
AGGAGGAGGGGGAGGACGACGGCGAAGGAGGGAGGACTGGGTCCGGTCGT
CCTCTTTACTTCGTGTCGGTGGACGTGCAGCGCTGCTATGACCATATCCA
GGTGCACCGTCTCATGGACATCTTGCGAGACACCTTATCTGCGGAGGCCT
ACCACATCCGTCGGTTTGCCGTCTCTCACCCTTTCCGCTCCCGGCACTCG
ATCCACATCAATCACCTCAAGGAGGCTTACCCCGAGGGCGGGTGGGAGGC
TTTCCCCGATATTGCCGCGAAGCTATCCCGGCATTATAAGGCCGCTGTGA
TGACGGACGGTGTGATCGAGTCCCGGCTATCGCGCGCCGAGGCGTTGACC
CTCTTGGAGGAGCACCTGATGTGCAGCTTTGTCCATCTCCCGCAGCAGCA
GCAGCAGCCGCAGCATCTGCAGCAGCGGCGGCGGAAGGGAGGAGGAGGGA
TGGAAGGAGGGCGGGAGAAAGGAGCGGGAGGAAAGCAATGCGGGAGGCGG
GTGCTGCGACAGATTCGTGGCATTTCTCAAGGCTCGATCCTTTCCCCCGC
TCTGTGCAACCTTTATCTGGGCCAGGCGGAAGGAGAAAAGGCGAGAGGAA
GGGAGGGAGGGAGAGGTCTCGCCTCCCTCGGAGGGAGGGAAGGGCATCAT
CGCCCTCTCTACTGGTGA

Synonyms

Publications