jgi.p|Nanoce1779_2|39006, mRNA_5848 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|39006
Unique Name	mRNA_5848
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2008
Alignment location	scaffold_11:724824..727112 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	39092
Track	FilteredModels2
ProteinId	39006

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:724824..727112 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|39006	gene_5848	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|39006	mRNA_5848-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5848	CDS_5848	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:724824..727112+
coding sequence from alignment at scaffold_11:724824..727112+

mRNA sequence

>mRNA_5848 ID=mRNA_5848|Name=jgi.p|Nanoce1779_2|39006|organism=Nannochloropsis oceanica|type=mRNA|length=2008bp
TTCGTCAAAACACTACGTCTCACACACTTAGCTTACAGGAGCATCTCCAT
CACCCTCATTATGCACAGGCTCAGTCCAACCATCAATCTGCACCCAATGC
TTGGGCTTCTCTCCTCTTTTGCAGCGACATAAACGTTCTCGCTCACTGGG
ACCGGCGATGTTTCTCTTCAGACTGTGCCTCCTCCCTCCCCATCCCATCG
ACCTTTATAGGGACATCCACACAGCACATCCTCGCTGCCCATTTCTATAA
CAGCAACGTTTATGAATTTGCCGCAACCGAAGCCCCCTTTCGATCTTGTC
AATCAAACCCTACGTACCTCCTCCCTCATTTTCGCCCATCTCAACCCCAC
CACAGAACGAACCATGCCGTCCAAGGGCAACGCCAGCAGTGGTAAGAAAA
AGAAGGTCGAAGTGGAATGCGAGAGCGATTCCTCGGTGGAGAGCAGCGAG
TCGGAAGCGCAGCAGTCGTCCTCAAGCGAGGAAGAAGAAGAAGAAGAAGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGACGAGGAGG
ATTCAGAAGAAGATGCCGCGTCGATCAGTGCATCTGATGCCGAAGGATCC
AAGCCCAAGACTGCTCACAAGAGGAAATCGCCCACTTCCACTATTGCTGT
AAGTGTGCTTGCGACCTCGACTGCGATTGGGAGCATGAAGAAAAAGATGA
ATGCACCGACGGCCACTACTGCTGCTGCCACTCCACGCCCTGTTCAATCT
TCTGTTACCGCTGCTTCAGCCACCCCCACTAGTAGCGCCTCACCGAGGCC
AGTAGTAGCCTCTCCTTCTTCCTCCACTGAGCCCTTGGCTTCTCTCACCC
CCGCCGCTATCGAGAAGAAGGCTAAGAAAACAGAAGGAGGAGGAGGAGGA
GCAGCAGCAGCAGCAGCAGCCGCAAAACTTCAGGGGAGCGTTAAGAAGTC
TCCCATCCCCAAGAAGAAGAAGGTTTCGAAAGAAAATGCCCCCCCTGTCA
CCGCCTCGTCGTCCTCTTTCTCTTCCTTCCCCGCTGTGGCAGCAACAGCA
ACAGCAGCCGCAAGCACCGCTAAAGCTGCTGCTGCTCCTCCTTCTTCTGC
TGCTGCTGTACCAGCTGCTCCAGCGAAGGCGAAACCGGGAGATGCCAAGA
GCATCATTCTTGAGTATATGATCAACGCCGCCCGGCCCTATGGTGCCCAG
AACGTCTTCGACAACTTGCACAAGACCATCGGGAAGGCCACCGTACAGAC
CATTCTCGACAAGCTGGCTGACGAAGGGAGCATAACCCGAAAGGAGATGG
GCAAGGCAAAGGTATATGTCGCCCCCCCTCCCTCCCTTGATCCCTCATCC
CTGGCACGAGAAACAGCGGCGTTGGATGCGCGTGTGAAGGCACTGCAGGA
GGAAAAGGCGAAGTGGGGAGGAAGGAAGGGGAAGGCGGAGGGGGAGGTTA
GGGGGTTGAGTGGGGGGATGGATAACGAGACGTTGAAAAGGGCGTTGTTG
GCCCTGAAAGAGGAGAATGAGGGGAGAGAGAAGAAACTTAGCGCGATGCG
GGGCACCGAGGGAGGGAAGGAGGGAGGGAGGGTAATGTTGGATACGACGC
AGGTAGCAGGCTTGGTTAAGGAGATGACCAAGATGAGGAGTCTGTGGGTG
GGGAGGAAGAGGGGGGCGATGGAGGTCGTGGCCAGTGTGGCGGAGGGGGC
GGGGAAGAGGGTGAAAGACATAGTGGATGTAATGGGGATTGAAACGGATG
AGGAGGCGGGAGTCAGTTTGCCACCTCTTGAGTCGTAGGTCTGCCCTCCC
TCCCTCCCTCCCTCCCTCATTCCCTTCCTCCCTCCCTCCCTGTACTGTGT
CTTGATTGAGGACCTTTGAAAGGGGAAAGGTATGCAGCAGGAGATGGTGA
ACATGACGGGGATTGAGATGGATGGCAAGGAAGGGATCGCTTTTTAGAGA
CTTGTGTCGCTTTTTCGTCGTTTGTGCGTGTCAATGGTGTGTGCGGGCAC
GAACGATG

protein sequence of jgi.p|Nanoce1779_2|39006

>mRNA_5848-protein ID=mRNA_5848-protein|Name=jgi.p|Nanoce1779_2|39006|organism=Nannochloropsis oceanica|type=polypeptide|length=509bp
MNLPQPKPPFDLVNQTLRTSSLIFAHLNPTTERTMPSKGNASSGKKKKVE
VECESDSSVESSESEAQQSSSSEEEEEEEEEEEEEEEEEEEEEDEEDSEE
DAASISASDAEGSKPKTAHKRKSPTSTIAVSVLATSTAIGSMKKKMNAPT
ATTAAATPRPVQSSVTAASATPTSSASPRPVVASPSSSTEPLASLTPAAI
EKKAKKTEGGGGGAAAAAAAAKLQGSVKKSPIPKKKKVSKENAPPVTASS
SSFSSFPAVAATATAAASTAKAAAAPPSSAAAVPAAPAKAKPGDAKSIIL
EYMINAARPYGAQNVFDNLHKTIGKATVQTILDKLADEGSITRKEMGKAK
VYVAPPPSLDPSSLARETAALDARVKALQEEKAKWGGRKGKAEGEVRGLS
GGMDNETLKRALLALKEENEGREKKLSAMRGTEGGKEGGRVMLDTTQVAG
LVKEMTKMRSLWVGRKRGAMEVVASVAEGAGKRVKDIVDVMGIETDEEAG
VSLPPLES*

mRNA from alignment at scaffold_11:724824..727112+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5848 ID=mRNA_5848|Name=jgi.p|Nanoce1779_2|39006|organism=Nannochloropsis oceanica|type=mRNA|length=2289bp|location=Sequence derived from alignment at scaffold_11:724824..727112+ (Nannochloropsis oceanica)
TTCGTCAAAACACTACGTCTCACACACTTAGCTTACAGGAGCATCTCCAT
CACCCTCATTATGCACAGGCTCAGTCCAACCATCAATCTGCACCCAATGC
TTGGGCTTCTCTCCTCTTTTGCAGCGACATAAACGTTCTCGCTCACTGGG
ACCGGCGATGTTTCTCTTCAGACTGTGCCTCCTCCCTCCCCATCCCATCG
ACCTTTATAGGGACATCCACACAGCACATCCTCGCTGCCCATTTCTATAA
CAGCAACGTTTATGAATTTGCCGCAACCGAAGCCCCCTTTCGATCTTGTC
AATCAAACCCTACGTACCTCCTCCCTCATTTTCGCCCATCTCAACCCCAC
CACAGAACGAACCATGCCGTCCAAGGGCAACGCCAGCAGTGGTAAGAAAA
AGAAGGTCGAAGTGGAATGCGAGAGCGATTCCTCGGTGGAGAGCAGCGAG
TCGGAAGCGCAGCAGTCGTCCTCAAGCGAGGAAGAAGAAGAAGAAGAAGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGACGAGGAGG
ATTCAGAAGAAGATGCCGCGTCGATCAGTGCATCTGATGCCGAAGGATCC
AAGCCCAAGACTGCTCACAAGAGGAAATCGCCCACTTCCACTATTGCTGT
AAGTGTGCTTGCGACCTCGACTGCGATTGGGAGCATGAAGAAAAAGATGA
ATGCACCGACGGCCACTACTGCTGCTGCCACTCCACGCCCTGTTCAATCT
TCTGTTACCGCTGCTTCAGCCACCCCCACTAGTAGCGCCTCACCGAGGCC
AGTAGTAGCCTCTCCTTCTTCCTCCACTGAGCCCTTGGCTTCTCTCACCC
CCGCCGCTATCGAGAAGAAGGCTAAGAAAACAGAAGGAGGAGGAGGAGGA
GCAGCAGCAGCAGCAGCAGCCGCAAAACTTCAGGGGAGCGTTAAGAAGTC
TCCCATCCCCAAGAAGAAGAAGGTTTCGAAAGAAAATGCCCCCCCTGTCA
CCGCCTCGTCGTCCTCTTTCTCTTCCTTCCCCGCTGTGGCAGCAACAGCA
ACAGCAGCCGCAAGCACCGCTAAAGCTGCTGCTGCTCCTCCTTCTTCTGC
TGCTGCTGTACCAGCTGCTCCAGCGAAGGCGAAACCGGGAGATGCCAAGA
GCATCATTCTTGAGTATATGATCAACGCCGCCCGGCCCTATGGGTAAGTC
GTTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTGCAAGGTAGCCTTCT
GTCCCAGCTGATAGCTTACCTCCCCTATTCTTGCCCCCGTTCCCACTCAC
CCCCACTCACCCCCCCCTATGCTTTGCATAACAGTGCCCAGAACGTCTTC
GACAACTTGCACAAGACCATCGGGAAGGTGACAAGGGAGGAAGGGAGGGA
GGGAGGAAGGGACGAAGGAAGGAAGGGGGCCAAACGGAGTTTTTTCCGGC
AGTTGTGATGAACGAGATCCAGCTTGTCAATCTCACCCCCCTTCCCTCCT
TCCCGCCTTCCGTCCAGGCCACCGTACAGACCATTCTCGACAAGCTGGCT
GACGAAGGGAGCATAACCCGAAAGGAGATGGGCAAGGCAAAGGTATATGT
CGCCCCCCCTCCCTCCCTTGATCCCTCATCCCTGGCACGAGAAACAGCGG
CGTTGGATGCGCGTGTGAAGGCACTGCAGGAGGAAAAGGCGAAGTGGGGA
GGAAGGAAGGGGAAGGCGGAGGGGGAGGTTAGGGGGTTGAGTGGGGGGAT
GGATAACGAGACGTTGAAAAGGGCGTTGTTGGCCCTGAAAGAGGAGAATG
AGGGGAGAGAGAAGAAACTTAGCGCGATGCGGGGCACCGAGGGAGGGAAG
GAGGGAGGGAGGGTAATGTTGGATACGACGCAGGTAGCAGGCTTGGTTAA
GGAGATGACCAAGATGAGGAGTCTGTGGGTGGGGAGGAAGAGGGGGGCGA
TGGAGGTCGTGGCCAGTGTGGCGGAGGGGGCGGGGAAGAGGGTGAAAGAC
ATAGTGGATGTAATGGGGATTGAAACGGATGAGGAGGCGGGAGTCAGTTT
GCCACCTCTTGAGTCGTAGGTCTGCCCTCCCTCCCTCCCTCCCTCCCTCA
TTCCCTTCCTCCCTCCCTCCCTGTACTGTGTCTTGATTGAGGACCTTTGA
AAGGGGAAAGGTATGCAGCAGGAGATGGTGAACATGACGGGGATTGAGAT
GGATGGCAAGGAAGGGATCGCTTTTTAGAGACTTGTGTCGCTTTTTCGTC
GTTTGTGCGTGTCAATGGTGTGTGCGGGCACGAACGATG

Coding sequence (CDS) from alignment at scaffold_11:724824..727112+

>mRNA_5848 ID=mRNA_5848|Name=jgi.p|Nanoce1779_2|39006|organism=Nannochloropsis oceanica|type=CDS|length=4581bp|location=Sequence derived from alignment at scaffold_11:724824..727112+ (Nannochloropsis oceanica)
ATGAATTTGCCGCAACCGAAGCCCCCTTTCGATCTTGTCAATCAAACCCT
ACGTACCTCCTCCCTCATTTTCGCCCATCTCAACCCCACCACAGAACGAA
CCATGCCGTCCAAGGGCAACGCCAGCAGTGGTAAGAAAAAGAAGGTCGAA
GTGGAATGCGAGAGCGATTCCTCGGTGGAGAGCAGCGAGTCGGAAGCGCA
GCAGTCGTCCTCAAGCGAGGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAAGAGGAGGACGAGGAGGATTCAGAAGAA
GATGCCGCGTCGATCAGTGCATCTGATGCCGAAGGATCCAAGCCCAAGAC
TGCTCACAAGAGGAAATCGCCCACTTCCACTATTGCTGTAAGTGTGCTTG
CGACCTCGACTGCGATTGGGAGCATGAAGAAAAAGATGAATGCACCGACG
GCCACTACTGCTGCTGCCACTCCACGCCCTGTTCAATCTTCTGTTACCGC
TGCTTCAGCCACCCCCACTAGTAGCGCCTCACCGAGGCCAGTAGTAGCCT
CTCCTTCTTCCTCCACTGAGCCCTTGGCTTCTCTCACCCCCGCCGCTATC
GAGAAGAAGGCTAAGAAAACAGAAGGAGGAGGAGGAGGAGCAGCAGCAGC
AGCAGCAGCCGCAAAACTTCAGGGGAGCGTTAAGAAGTCTCCCATCCCCA
AGAAGAAGAAGGTTTCGAAAGAAAATGCCCCCCCTGTCACCGCCTCGTCG
TCCTCTTTCTCTTCCTTCCCCGCTGTGGCAGCAACAGCAACAGCAGCCGC
AAGCACCGCTAAAGCTGCTGCTGCTCCTCCTTCTTCTGCTGCTGCTGTAC
CAGCTGCTCCAGCGAAGGCGAAACCGGGAGATGCCAAGAGCATCATTCTT
GAGTATATGATCAACGCCGCCCGGCCCTATGGTGCCCAGAACGTCTTCGA
CAACTTGCACAAGACCATCGGGAAGGCCACCGTACAGACCATTCTCGACA
AGCTGGCTGACGAAGGGAGCATAACCCGAAAGGAGATGGGCAAGGCAAAG
GTATATGTCGCCCCCCCTCCCTCCCTTGATCCCTCATCCCTGGCACGAGA
AACAGCGGCGTTGGATGCGCGTGTGAAGGCACTGCAGGAGGAAAAGGCGA
AGTGGGGAGGAAGGAAGGGGAAGGCGGAGGGGGAGGTTAGGGGGTTGAGT
GGGGGGATGGATAACGAGACGTTGAAAAGGGCGTTGTTGGCCCTGAAAGA
GGAGAATGAGGGGAGAGAGAAGAAACTTAGCGCGATGCGGGGCACCGAGG
GAGGGAAGGAGGGAGGGAGGGTAATGTTGGATACGACGCAGGTAGCAGGC
TTGGTTAAGGAGATGACCAAGATGAGGAGTCTGTGGGTGGGGAGGAAGAG
GGGGGCGATGGAGGTCGTGGCCAGTGTGGCGGAGGGGGCGGGGAAGAGGG
TGAAAGACATAGTGGATGTAATGGGGATTGAAACGGATGAGGAGGCGGGA
GTCAGTTTGCCACCTCTTGAGTCGTAGATGAATTTGCCGCAACCGAAGCC
CCCTTTCGATCTTGTCAATCAAACCCTACGTACCTCCTCCCTCATTTTCG
CCCATCTCAACCCCACCACAGAACGAACCATGCCGTCCAAGGGCAACGCC
AGCAGTGGTAAGAAAAAGAAGGTCGAAGTGGAATGCGAGAGCGATTCCTC
GGTGGAGAGCAGCGAGTCGGAAGCGCAGCAGTCGTCCTCAAGCGAGGAAG
AAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAA
GAGGAGGACGAGGAGGATTCAGAAGAAGATGCCGCGTCGATCAGTGCATC
TGATGCCGAAGGATCCAAGCCCAAGACTGCTCACAAGAGGAAATCGCCCA
CTTCCACTATTGCTGTAAGTGTGCTTGCGACCTCGACTGCGATTGGGAGC
ATGAAGAAAAAGATGAATGCACCGACGGCCACTACTGCTGCTGCCACTCC
ACGCCCTGTTCAATCTTCTGTTACCGCTGCTTCAGCCACCCCCACTAGTA
GCGCCTCACCGAGGCCAGTAGTAGCCTCTCCTTCTTCCTCCACTGAGCCC
TTGGCTTCTCTCACCCCCGCCGCTATCGAGAAGAAGGCTAAGAAAACAGA
AGGAGGAGGAGGAGGAGCAGCAGCAGCAGCAGCAGCCGCAAAACTTCAGG
GGAGCGTTAAGAAGTCTCCCATCCCCAAGAAGAAGAAGGTTTCGAAAGAA
AATGCCCCCCCTGTCACCGCCTCGTCGTCCTCTTTCTCTTCCTTCCCCGC
TGTGGCAGCAACAGCAACAGCAGCCGCAAGCACCGCTAAAGCTGCTGCTG
CTCCTCCTTCTTCTGCTGCTGCTGTACCAGCTGCTCCAGCGAAGGCGAAA
CCGGGAGATGCCAAGAGCATCATTCTTGAGTATATGATCAACGCCGCCCG
GCCCTATGGTGCCCAGAACGTCTTCGACAACTTGCACAAGACCATCGGGA
AGGCCACCGTACAGACCATTCTCGACAAGCTGGCTGACGAAGGGAGCATA
ACCCGAAAGGAGATGGGCAAGGCAAAGGTATATGTCGCCCCCCCTCCCTC
CCTTGATCCCTCATCCCTGGCACGAGAAACAGCGGCGTTGGATGCGCGTG
TGAAGGCACTGCAGGAGGAAAAGGCGAAGTGGGGAGGAAGGAAGGGGAAG
GCGGAGGGGGAGGTTAGGGGGTTGAGTGGGGGGATGGATAACGAGACGTT
GAAAAGGGCGTTGTTGGCCCTGAAAGAGGAGAATGAGGGGAGAGAGAAGA
AACTTAGCGCGATGCGGGGCACCGAGGGAGGGAAGGAGGGAGGGAGGGTA
ATGTTGGATACGACGCAGGTAGCAGGCTTGGTTAAGGAGATGACCAAGAT
GAGGAGTCTGTGGGTGGGGAGGAAGAGGGGGGCGATGGAGGTCGTGGCCA
GTGTGGCGGAGGGGGCGGGGAAGAGGGTGAAAGACATAGTGGATGTAATG
GGGATTGAAACGGATGAGGAGGCGGGAGTCAGTTTGCCACCTCTTGAGTC
GTAGATGAATTTGCCGCAACCGAAGCCCCCTTTCGATCTTGTCAATCAAA
CCCTACGTACCTCCTCCCTCATTTTCGCCCATCTCAACCCCACCACAGAA
CGAACCATGCCGTCCAAGGGCAACGCCAGCAGTGGTAAGAAAAAGAAGGT
CGAAGTGGAATGCGAGAGCGATTCCTCGGTGGAGAGCAGCGAGTCGGAAG
CGCAGCAGTCGTCCTCAAGCGAGGAAGAAGAAGAAGAAGAAGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGACGAGGAGGATTCAGA
AGAAGATGCCGCGTCGATCAGTGCATCTGATGCCGAAGGATCCAAGCCCA
AGACTGCTCACAAGAGGAAATCGCCCACTTCCACTATTGCTGTAAGTGTG
CTTGCGACCTCGACTGCGATTGGGAGCATGAAGAAAAAGATGAATGCACC
GACGGCCACTACTGCTGCTGCCACTCCACGCCCTGTTCAATCTTCTGTTA
CCGCTGCTTCAGCCACCCCCACTAGTAGCGCCTCACCGAGGCCAGTAGTA
GCCTCTCCTTCTTCCTCCACTGAGCCCTTGGCTTCTCTCACCCCCGCCGC
TATCGAGAAGAAGGCTAAGAAAACAGAAGGAGGAGGAGGAGGAGCAGCAG
CAGCAGCAGCAGCCGCAAAACTTCAGGGGAGCGTTAAGAAGTCTCCCATC
CCCAAGAAGAAGAAGGTTTCGAAAGAAAATGCCCCCCCTGTCACCGCCTC
GTCGTCCTCTTTCTCTTCCTTCCCCGCTGTGGCAGCAACAGCAACAGCAG
CCGCAAGCACCGCTAAAGCTGCTGCTGCTCCTCCTTCTTCTGCTGCTGCT
GTACCAGCTGCTCCAGCGAAGGCGAAACCGGGAGATGCCAAGAGCATCAT
TCTTGAGTATATGATCAACGCCGCCCGGCCCTATGGTGCCCAGAACGTCT
TCGACAACTTGCACAAGACCATCGGGAAGGCCACCGTACAGACCATTCTC
GACAAGCTGGCTGACGAAGGGAGCATAACCCGAAAGGAGATGGGCAAGGC
AAAGGTATATGTCGCCCCCCCTCCCTCCCTTGATCCCTCATCCCTGGCAC
GAGAAACAGCGGCGTTGGATGCGCGTGTGAAGGCACTGCAGGAGGAAAAG
GCGAAGTGGGGAGGAAGGAAGGGGAAGGCGGAGGGGGAGGTTAGGGGGTT
GAGTGGGGGGATGGATAACGAGACGTTGAAAAGGGCGTTGTTGGCCCTGA
AAGAGGAGAATGAGGGGAGAGAGAAGAAACTTAGCGCGATGCGGGGCACC
GAGGGAGGGAAGGAGGGAGGGAGGGTAATGTTGGATACGACGCAGGTAGC
AGGCTTGGTTAAGGAGATGACCAAGATGAGGAGTCTGTGGGTGGGGAGGA
AGAGGGGGGCGATGGAGGTCGTGGCCAGTGTGGCGGAGGGGGCGGGGAAG
AGGGTGAAAGACATAGTGGATGTAATGGGGATTGAAACGGATGAGGAGGC
GGGAGTCAGTTTGCCACCTCTTGAGTCGTAG

Synonyms

Publications