jgi.p|Nanoce1779_2|39006, gene_5848 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|39006
Unique Namegene_5848
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_11:724824..727112 +

Link to JBrowse

Properties
Property NameValue
TranscriptId39092
ProteinId39006
Product nameTat binding protein 1(TBP-1)-interacting protein (TBPIP)-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:724824..727112 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL069ncniL069Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02690NO14G02690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|39006mRNA_5848-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|39006mRNA_5848Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|39006

>mRNA_5848-protein ID=mRNA_5848-protein|Name=jgi.p|Nanoce1779_2|39006|organism=Nannochloropsis oceanica|type=polypeptide|length=509bp
MNLPQPKPPFDLVNQTLRTSSLIFAHLNPTTERTMPSKGNASSGKKKKVE
VECESDSSVESSESEAQQSSSSEEEEEEEEEEEEEEEEEEEEEDEEDSEE
DAASISASDAEGSKPKTAHKRKSPTSTIAVSVLATSTAIGSMKKKMNAPT
ATTAAATPRPVQSSVTAASATPTSSASPRPVVASPSSSTEPLASLTPAAI
EKKAKKTEGGGGGAAAAAAAAKLQGSVKKSPIPKKKKVSKENAPPVTASS
SSFSSFPAVAATATAAASTAKAAAAPPSSAAAVPAAPAKAKPGDAKSIIL
EYMINAARPYGAQNVFDNLHKTIGKATVQTILDKLADEGSITRKEMGKAK
VYVAPPPSLDPSSLARETAALDARVKALQEEKAKWGGRKGKAEGEVRGLS
GGMDNETLKRALLALKEENEGREKKLSAMRGTEGGKEGGRVMLDTTQVAG
LVKEMTKMRSLWVGRKRGAMEVVASVAEGAGKRVKDIVDVMGIETDEEAG
VSLPPLES*
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Synonyms
Publications