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Properties
| Property Name | Value |
|---|
| TranscriptId | 617513 |
| Track | FilteredModels2 |
| ProteinId | 617427 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_138 | supercontig | scaffold_138:1616..3168 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_11825 ID=mRNA_11825|Name=jgi.p|Nanoce1779_2|617427|organism=Nannochloropsis oceanica|type=mRNA|length=1553bp
AACAGGAATTGCAATCGCGCCACACGCATCATGGCGACTTTCCGCTTGCC
TTTCCTTCCAACATCTTTCTCTCTGCCGGCGGCCGCTTCCACCCCCATCA
CGTCTCATTCTCTGGACATGAATCCTCCTTCCCAACCTGTCATTTCATCC
TCTTCGATATCTTGCAAGCAGAGCCTGTATTCATCCTCCGCAATGGCCTC
TGGTCTCTCTGTAGCCTCGAACGTCCCACAGCCGGAGCGCGACGAGGACT
GGCTCTACCAACATCGCCTCTGCGAAACTGCTATGCTTGTTACCCGTCTT
GTATTTTGCGATGGAGAAGAGGAGGAATGTAACGCTGACCAAGATTCCTC
CGCCGCCGGCTCAATGCTTCAGGGCGGCGATACTAACAAGAGAAGAAGAA
GAGTAGGACGGGGACGCTCGGCGCGATCAGCAGAAGCGGTACGACAAGTA
GAAGCTGCTACCCGCGAATGGTATGCACCGTTCCGACCTAATAAGGGTCA
CAACAATTCTCGCGCCCCCATCGCGAGCGGTAATGACGTGTCTTCCTCTT
TCCATCTCCCCTCTGCGCCCTGTGCTGCTGGAGAGCTTGCTTCTCCTTTC
TCTCCCTCTTCTCCTCCCGACCTGGGCTACTCCTCCATGACGACCACTAT
AGCAACGATAAATACGTATGTCAGGACCAGCAGCAGTAGGAAGGAAGGAT
GGATGGAGGGTGTGAGCAAGCGGGCTTTCTACAAACGTCGACGAAAGGCT
CGCCAGGCGGCGGAATACGCAATAGATTGCGTGCTACAGGAGGTGGAGAG
TCGAGTCGTGGGGCTTGCGGGAATTGAAAGCCAGGAGGAATGAGCTGGAG
TAAGGAAGAGGGGGAATAATGCTTGTGGGCAAGGAGCGACATGGGTCAAG
GGGGAAGGACGAGGGTGTGTGTGTGCGCGCATTTGAGTTGCTGGTGAATG
CGTGGCTGAAACCTCATAACATGGGCGCGGAAAGGATACAGGGTGAATAT
TGGAGGGGAAAAGGATGGAGGATTACAGAACGAGACAGAGAATTTTGGGA
GTAAGAGACGGACATGCGTGCGTGCACGTGCCTGTGTGTGAAAGCAAGCA
AGATGCTTATTCTACCGTCTCACCGACCCGACGTGAGGGTCAAAAAAGAG
ATAATGGGATCAAGGCAAATCACGACGTGAATTTTCAAATAAAAGATTAC
AAGAATCCATCCCTGTATTTCAAATAGATTAGAAACAATGCGTTAATTAA
TTCAGAGGTGCATTTCCACCCGTCCGAGGGGGCGATGATCCGAGTGTGTA
CGGGGGACGATCCATCAGTAGGAGGAAGAAGCGAGAGAAGACGAGGCGGA
CGGATGACGCCGGAGGAAGTAGAAAGGGAGAAAGGGACAAACCACACACA
CATATAAATTTTGTCATCAAAAGCAACATGAATTGGAGTCGATGACAGGT
ACTCGGATGCATGGTCAGTAGGAAAGGAAAGGGAGATGGAAAGAGAGGAG
AACACATCCCACGCATCATTAAAATGGAAAAAAAAAATACATATGATTCC
AGG back to topprotein sequence of jgi.p|Nanoce1779_2|617427 >mRNA_11825-protein ID=mRNA_11825-protein|Name=jgi.p|Nanoce1779_2|617427|organism=Nannochloropsis oceanica|type=polypeptide|length=271bp
MATFRLPFLPTSFSLPAAASTPITSHSLDMNPPSQPVISSSSISCKQSLY
SSSAMASGLSVASNVPQPERDEDWLYQHRLCETAMLVTRLVFCDGEEEEC
NADQDSSAAGSMLQGGDTNKRRRRVGRGRSARSAEAVRQVEAATREWYAP
FRPNKGHNNSRAPIASGNDVSSSFHLPSAPCAAGELASPFSPSSPPDLGY
SSMTTTIATINTYVRTSSSRKEGWMEGVSKRAFYKRRRKARQAAEYAIDC
VLQEVESRVVGLAGIESQEE* back to topmRNA from alignment at scaffold_138:1616..3168- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_11825 ID=mRNA_11825|Name=jgi.p|Nanoce1779_2|617427|organism=Nannochloropsis oceanica|type=mRNA|length=1553bp|location=Sequence derived from alignment at scaffold_138:1616..3168- (Nannochloropsis oceanica)
AACAGGAATTGCAATCGCGCCACACGCATCATGGCGACTTTCCGCTTGCC
TTTCCTTCCAACATCTTTCTCTCTGCCGGCGGCCGCTTCCACCCCCATCA
CGTCTCATTCTCTGGACATGAATCCTCCTTCCCAACCTGTCATTTCATCC
TCTTCGATATCTTGCAAGCAGAGCCTGTATTCATCCTCCGCAATGGCCTC
TGGTCTCTCTGTAGCCTCGAACGTCCCACAGCCGGAGCGCGACGAGGACT
GGCTCTACCAACATCGCCTCTGCGAAACTGCTATGCTTGTTACCCGTCTT
GTATTTTGCGATGGAGAAGAGGAGGAATGTAACGCTGACCAAGATTCCTC
CGCCGCCGGCTCAATGCTTCAGGGCGGCGATACTAACAAGAGAAGAAGAA
GAGTAGGACGGGGACGCTCGGCGCGATCAGCAGAAGCGGTACGACAAGTA
GAAGCTGCTACCCGCGAATGGTATGCACCGTTCCGACCTAATAAGGGTCA
CAACAATTCTCGCGCCCCCATCGCGAGCGGTAATGACGTGTCTTCCTCTT
TCCATCTCCCCTCTGCGCCCTGTGCTGCTGGAGAGCTTGCTTCTCCTTTC
TCTCCCTCTTCTCCTCCCGACCTGGGCTACTCCTCCATGACGACCACTAT
AGCAACGATAAATACGTATGTCAGGACCAGCAGCAGTAGGAAGGAAGGAT
GGATGGAGGGTGTGAGCAAGCGGGCTTTCTACAAACGTCGACGAAAGGCT
CGCCAGGCGGCGGAATACGCAATAGATTGCGTGCTACAGGAGGTGGAGAG
TCGAGTCGTGGGGCTTGCGGGAATTGAAAGCCAGGAGGAATGAGCTGGAG
TAAGGAAGAGGGGGAATAATGCTTGTGGGCAAGGAGCGACATGGGTCAAG
GGGGAAGGACGAGGGTGTGTGTGTGCGCGCATTTGAGTTGCTGGTGAATG
CGTGGCTGAAACCTCATAACATGGGCGCGGAAAGGATACAGGGTGAATAT
TGGAGGGGAAAAGGATGGAGGATTACAGAACGAGACAGAGAATTTTGGGA
GTAAGAGACGGACATGCGTGCGTGCACGTGCCTGTGTGTGAAAGCAAGCA
AGATGCTTATTCTACCGTCTCACCGACCCGACGTGAGGGTCAAAAAAGAG
ATAATGGGATCAAGGCAAATCACGACGTGAATTTTCAAATAAAAGATTAC
AAGAATCCATCCCTGTATTTCAAATAGATTAGAAACAATGCGTTAATTAA
TTCAGAGGTGCATTTCCACCCGTCCGAGGGGGCGATGATCCGAGTGTGTA
CGGGGGACGATCCATCAGTAGGAGGAAGAAGCGAGAGAAGACGAGGCGGA
CGGATGACGCCGGAGGAAGTAGAAAGGGAGAAAGGGACAAACCACACACA
CATATAAATTTTGTCATCAAAAGCAACATGAATTGGAGTCGATGACAGGT
ACTCGGATGCATGGTCAGTAGGAAAGGAAAGGGAGATGGAAAGAGAGGAG
AACACATCCCACGCATCATTAAAATGGAAAAAAAAAATACATATGATTCC
AGG back to topCoding sequence (CDS) from alignment at scaffold_138:1616..3168- >mRNA_11825 ID=mRNA_11825|Name=jgi.p|Nanoce1779_2|617427|organism=Nannochloropsis oceanica|type=CDS|length=813bp|location=Sequence derived from alignment at scaffold_138:1616..3168- (Nannochloropsis oceanica)
ATGGCGACTTTCCGCTTGCCTTTCCTTCCAACATCTTTCTCTCTGCCGGC
GGCCGCTTCCACCCCCATCACGTCTCATTCTCTGGACATGAATCCTCCTT
CCCAACCTGTCATTTCATCCTCTTCGATATCTTGCAAGCAGAGCCTGTAT
TCATCCTCCGCAATGGCCTCTGGTCTCTCTGTAGCCTCGAACGTCCCACA
GCCGGAGCGCGACGAGGACTGGCTCTACCAACATCGCCTCTGCGAAACTG
CTATGCTTGTTACCCGTCTTGTATTTTGCGATGGAGAAGAGGAGGAATGT
AACGCTGACCAAGATTCCTCCGCCGCCGGCTCAATGCTTCAGGGCGGCGA
TACTAACAAGAGAAGAAGAAGAGTAGGACGGGGACGCTCGGCGCGATCAG
CAGAAGCGGTACGACAAGTAGAAGCTGCTACCCGCGAATGGTATGCACCG
TTCCGACCTAATAAGGGTCACAACAATTCTCGCGCCCCCATCGCGAGCGG
TAATGACGTGTCTTCCTCTTTCCATCTCCCCTCTGCGCCCTGTGCTGCTG
GAGAGCTTGCTTCTCCTTTCTCTCCCTCTTCTCCTCCCGACCTGGGCTAC
TCCTCCATGACGACCACTATAGCAACGATAAATACGTATGTCAGGACCAG
CAGCAGTAGGAAGGAAGGATGGATGGAGGGTGTGAGCAAGCGGGCTTTCT
ACAAACGTCGACGAAAGGCTCGCCAGGCGGCGGAATACGCAATAGATTGC
GTGCTACAGGAGGTGGAGAGTCGAGTCGTGGGGCTTGCGGGAATTGAAAG
CCAGGAGGAATGA back to top
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